RNA id: XM_039791446.1


Basic Information

Item Value
RNA id XM_039791446.1
length 6799
RNA type mRNA
GC content 0.49
exon number 14
gene id iqsec3a
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11981998 ~ 12083790 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctggaaaggctacaaagacaccaaagacacccCCGTGATGGCTAGCTCCTTAGCTATTAGCAGGAAAAAACGCAACCAAACAGTGCTTCACCAGTTCTGCTGCCCTGCCCCAGAGGCCCCTGAGGTGGAGACCTCTACTGCCTGTGTCCCCAGCGATGACCTTCCTCCAGACTCGTCTATTGGGGAGGAAgggaagggaggagagggggagctGCAGAGTGAGGTCGAGTCACAACCACAGCCCGAGCAACAGCAGCAAGAGACTCAGCCACAGACTCAACCACCACAGCCACAGCCCCAGTGTGAGCCCCAACCACAGACTCAGCCCCAGCCCGAAACCAAACCTCAGCCAGAACCCGAACTCAAACCACAGCCTGCACCGGAGCCCGAGCCTGAGCCTGAGCctgagcccgagcccgagccTGAGCctgagcccgagcccgagcccgagcccgagACTGAGCCTCAGCCCCAAGTCAAGGCTCCGAGCGAAGAAGCGGCACAGGACGCCCCTGAAGCTCCTTCACCTTGCAGAGAGGAGCAgacagtggtggtggtggagcaaGAGAAGGAAACGTTGGAGGAAGTTGTGGAGGCACAGAGAAAGCAACAGGGAGAGGAGGCAAAGGCCGAGCAGCATGAGGGCGAGGCAGcacaggaagaagaggaggaggaggaagggggaggAGCAAAAGGAGGTGGGGCGGGGAGGAGAGCCAGCCTGCATCACACGGCCTCGCCCTTGAGGGTACAGCGCAACGGGGCCGGCTCGCACTCCGCCACCTCCGACTATGAGCTCTCGCTTGACCTCAAAAATAAGCAGATCGAAATGTTAGAGCACAAATACGGTGGCCACCTTATCTCCCGCCGTGCTGCCTGCAAGATCCAGACTGCCTTCCGCCAGTACCAGCTCAGCAAGAACTTCGAGAAGATCCGCAATTCGCTGCTAGAGAGTCGTCTGCCTCGACGCATCTCCCTGCGCAAGGTCCGTGTGCAAAACACGGAAGGTTTCTCTGCTGAACGGGCCCTGGCAGAAGGCTGCAACTTGACAGGCATCCCATTGGTGCGCTCGCCATCTCTGCCTGCCACAGTTGGTGGCACCCTGACCGACCTGGAAGACTCATTCACTGAACAGGTTCAGTCACTGGCAAAGTCCATAGATGACGCACTCAGCAACTGGAGCCTGAAGACCATGTGCTCACTGCAAGAAGGCGGCACTTATCAGTTCAGTGCCGACTCCttcagtgcagcagcagcagcagcagcagcagcagcaggaggtggaggtggaggagatGGAGGTGTTGTGAGAGAGTCAGCGATTCATCAAGGCCCAGTAGACCCAAGTGACCTGTCGAGAAGTGCAAGCAAGCTGATGATGGCGTTCCGGGATGTGACTGTGCAGTTCGACAGCCAGAACTTCCTTGTTTCATCCTCAGTCATAGAATCGTCCACTGTCACCCTCGGCAGCTGCGTCCAACAAGAAGGAGACCCCACCACTGTCATGTCTacttccacaacaacaaactcCACTCCAGCCTCCATTGCTCCCGGCCTCTCCCAAgaaccccctcctccccctgcaGAGCTCCCAGCTGAACCCATAGAtcccccaccacccccacaaGAGCCCCCACCACCCCCAGAATCAGAGTTTGAAGAAGACGAGCAGGATGTTGAatttcctgctcctcctccaagTGAAGAAGAGctcgaggaggaagaggagcagccTCCCCTAACCCCTCTGGATAAAATGGCTGCTCCTCAAAGCCCAGATAAGGTTGTGGTGGTGGTACCGCCACCCACAGAGCCCCCTCACGCAACCCCACCGCTGCTGGGGAGCTCGCCCAAGGTGGAGCCGCTGGAGGTCAAGCGGTGCGGCTCCGAGACCGCAGATAACAGCTCAGAGCagatgagcagcagcagcacgtcCACAGAGGCACGCTCCACATCTGAAGCCTCGTCCAAGGAGGCACTGCAGGCCATGATCCTCAGCCTGCCACGCTACCACTGTGAGAACCCAGCCAGCTGTAAATCACCCACGCTATCCACTGATGTCATGCGAAAACGCCTCTACCGCATCGGCCTCAATCTCTTCAATGTaAACCCTGATAAGGGTCTTCAGTTCCTGATCTCTCGAGGCTTCATCCCAGATACACCTATCGGCGTTGCCCACTTCCTGCTGCAGAGGAAAGGCTTGAGCCGACAGATGATTGGAGAGTTCCTCGGAAACAGCAAGAAGCCCTTCAACAGAGATGTCCTAGATTGTGTGGTGGATGAGATGGACTTCTCAGGCATGGAGCTGGATGAAGCGCTGAGGAAGTTTCAGGCCCACATTCGTGTCCAGGGAGAAGCCCAGAAGGTAGAACGTCTTATCGAGGCCTTCAGTCAGCGCTACTGCATGTGTAACCCCGACGTGGTGCAGCAGTTTCACAACCCAGACACCATCTTCATCCTGGCCTTCGCCATCATTCTGCTCAACACCGACATGTACAGTCCAAACATCAAGCCCGACCGCAAGATGATGTTGGAGGACTTCATACGCAACCTACGAGGAGTGGATGATGGAGCAGACATCCCCAGAGACATGGTGGTGGGAATCTACGAAAGAATACAACAGAGGGAGTTACGCTCCAACGAAGACCACGTCACCTACGTCTCCAAGGTTGAGCAGTCCATCGTAGGCATGAAAACCGTTCTCTCCGTCCCTCATAGAAGACTGGTGTGCTGTAGTCGACTTTTTGAGGTGACCGATGTCAACAAGGCCCAAAAACAGGCAGCACACCAGAGAGAAGTCTTCCTCTTCAATGATCTCATTGTGATCTTGAAGCTTTGTCCAAAGAAAAAGAGTTCTGCAGCCTACACTTTCTGCAAAGCTATGGGCCTACTTGGCATGCAGTTTCACCTGTTTGAAAATGAATACTATCCTCATGGCATCACCATCCTCTCACCTTTTGGCTCAGACAAGAAGCAGGTACTTAACTTCTGTGCCCAAAGTGCTGAGGAGCTGCTCAAGTTTGTAGAAGACCTGAAGGAATCAATTGCAGAGGTGTCAGAGATGGAGCAGATACGCATCGAGTGGGAGCTGGAAAAGCAGCAGGGAGCCAAGACGCACTCCGTAAAGAACAACGGCACACAGCTAGAGCTGCATGGCAAACAGGGCTCCCcatcagGAAACCAGGAGATAGATGACAGAAGTGGACACAACGCAGTGGAGGTGTCAATTCACAACAGGCTTCAGACGTACcagctcagcagcagcagcacggctCGGAGTCCCGAGAGTTTGGCCCTTCTTAACCACCGGGGGGAGCTGCTTTTCCAGCAGGGGCCCGAGGGGCTAACCCATGGGCCGGCGCCTCCACCTCAGCACCCGCAGTTGCAGTCAGCGGCAAGCACCCCTGCCCATCACCTCCACCTCCAacagcaccagcagcagccgGCTGTCAGCATGGCTGATCTGCGGCCCGAGACACTCATCCAGTGTCAGCAGATTGTTAAGGTCATCATGCTCGACAACAGCGGCCACGGACGCATGGAGGCCTTCCTCAGCCAAACGCCCACTCACCACCACTACCAGCATCACCACCACAGCCACCACCAGCTCAGCCAGTCAGCCATGTCCACCCCGGTGCGCTCGCCGGACTGCTCCCATGGCACCGATGGCCACCAGCCCCCGCTGcctcccccacctcctccttACAACCACCCGCACCAGTACATACCCCCTGACCCCCGCCTCAGTCTACACCGGACCCCAAGTGGCTCTCGGAGCATGGTGTAAATAAATGAATTAGGATTCTttccctgaaaacacacacttccacacacactcccacacgaACCTTACCCCTTCTCTACCTATTTAAAAGTACataatgtacatatatacatacagatgAAAGAGTTATAatggaaaaaatgaaatctcacCTATATGcatatttaaggaaaaaaataaacgaAAATTAAAAATTAAGGTTTTAAAAGAGAAACGGAGAAATAAAGTGCATATATAAAGTTTTACTTGATTCCACATGTATTTTGAAATATTATGTAGTTTTAACAAATTtctataactttttgtcagttttAACTCTTGCTAGAGAAAAAACAGATTTTCCATTTCTGGATGGATTCCTTCTAGCTCTGGTATTCATCACCAAAACCAACATAAATGGACTGTGATGGATGGACACACTTCAAGGACCTTCCGCTTCTGTTCGCTTTTATCATCCCAAACCTCATGCCTACTGTGCTGTATGTGCACGTGCGTGCATCGTTGACACTTACTGAAAACGTGTGCCAAAATACATTAGCCTTCACTAAACACTGACTTCTTTGCACTTGACTAAACGCTAGggctagaagaaaaaaaaacaaagaaaaaaactccTTTCTTTTGCTTTGAGAAAATAGTCACACTTCTCCCTCAaggaacacaaaaaaaaaagaaaaacaaacctgatatttcatcttttttaaATCTCCCTGTGTGCTCTGTTGATGATTTATTTATGTGACGGAGAgccttctctcttcttctctgctccccttgataaaaaaaaaaaaatggaaaaaaacgaCCTCCGATAAGCTGCATTTGTCATCCGCTCCTCTGTCGTGTTGTGGCTCTCTATCATCAGAAAACACTCTAACTCAATTGTCACTCTCCATAGATCTTTCTACAGTGGAGGATGGCAGGAAACAAAAGCAACTAATCACGCGGATTGCTTCCAAAACCAAAAATTCAGCCCAGGATGGTCCTGTTGATTGTTGTTTGTCTGTTACTCTTCATATTTAATAGCCTATCGATAACGCTTCCCAGGAGTTCGTTCCACATGTTATCTGCTGATGGAGggaacttttttttgttgaaatcgTTTAAGCTGCTGAAACTGCTCTCGGACTTTTCTATAGCTACAATGATTCACCATTCacatgtaatatactgtatgtacactgTGCTGTCATCTGTTGTTTAGGAAACGCTTCTTTGCTTTTTCAGTAAATCGCCATGAATTTCCATGAAGATGCTTCTGCTACAACTGTTAAATGTCAAGATCTGTGTTTATTTTGATTTGTGTAAAACATATTCCACCATTGTGTGTTTTCCGTCGGTGGATAAATGCAGGACACCCACAAAACATCCAGACACTGTCTATTTATGTCGGAACAACTCCCAGGTTTTGTTTCAGCTCCTTGTGACTGTTTTCTCTTCCTAACCTTTCAGTCtgacattttcaaaaaggcaaaaaaaaactacacaggcgcgcacacacagcTTCTGTTGCAAATGCTGGCATTAATGGTATTGTTCGTGCTGTTCGCTAGCCTGCTTTAAATAAGAACGGGACAAAAGCAACATATTATCtgatctctttccatttcaCCCCAGCCTAGATTGTAAATACCACATTCAAGCAGTGTCAGAAAGGACAAGCAAGCTACTGCTGCCCTTCAAAATGCTATTGCCCTGTCACACGTCCTTCATTCGGAAATAGGGCAGCTGAATGCGTCCATCTTTTAAACATAAGCCCCGCCAGGTACTGTGGAATGGATGTTCGGTTAACTCTGCTCCCATCTGACCCCCACCTGTCTGATTTGTTGATTTATAATCACAGAGCCACTGCGGGGAGGTCTCTATCTcatcttttctgtcttttttcacTCATGATTTCACCCAGTGGAAATACAGAGGTTGCAGAAAAAACTGTCTGgcagagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctcacaGTAGCATCCTAACTTTCCTGTAAACCAATGTGACCTCTCTCCAGTTTGTCCCGGTAATTGCTTTTGTTCATATTTCAATAACACAATGAGGAGAACTAGCGCTTTCAAAATGAATGAAGAGCTATTATgacaattttaatatttttcactgGCTATGAACAACTTTTGGAGGTTGCGTAATACATTTCAGCATATAACATAGAAAGTTCTGATATTATGGATTTAACATTGATGGATGATTGTTGTGATTTAGATCAACATTCACATATAAATGTGATTCTTTTCTCATGCATGCTATCAGTTTAGAGGCCTATTGAACTGATTcccatttttattgtttattgtttgtgCATGACTGAATTTAGTGAAAGATGAAGATgacacattttttgtttgtggttgaactaaaaaatattaattatgaCAGAAAACAGCCCTTCAAACAGAAAATGGATTTACAATGGCAAATCGTGGCCATGTTTGTTTCCCTGTCTATCACTACCCTTTCTTAATGGTTGCATAGTTTTTCCTACTTGACAATGTGTTTAAGCATTTTGAGAGATAGATATCctgggtgtgcaaaaaaaaaaacatgaatatgagCCACACTGAAAATCATGACTTTATGTTTGAAAGCAAAACAATGTAGCATTTTGGGAGTGCAGCATATGACATGGAAGAGCAGTAGTGGCTAACTTTCTTaaagaaactgaaaaaaggGCTCTGCCATACCAGTGTGGAGCTTGTCTGGCTCTTCAACACTGTTTGCTCCAACTAGTTTAAAAAAGTGGACATTTTTAGGGTAAGACAGGTGGAAACTGAGTGTAACAGATATGTACCATCACCTCCCTCAGTTGGCTTTGAATCCCTCTCTACCTGTCTTTGCAGTGTATCAACATGCTATTAAAGATGATTTAAGTCTATTCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308476 lncRNA downstream 12520 11966652 ~ 11969478 (-) True G227407
XR_005638139.1 lncRNA downstream 32797 11944330 ~ 11949201 (-) True LOC120553250
TU308452 lncRNA downstream 75178 11895646 ~ 11906820 (-) False LOC120553249
TU308577 lncRNA upstream 560986 12639434 ~ 12639775 (-) True G227488
XR_005638105.1 lncRNA upstream 821866 12900314 ~ 13004455 (-) True LOC120553123
XR_005638106.1 lncRNA upstream 823750 12902198 ~ 13004455 (-) False LOC120553123
XR_005638104.1 lncRNA upstream 823750 12902198 ~ 13004455 (-) False LOC120553123
TU308709 lncRNA upstream 897938 12976386 ~ 13004473 (-) False LOC120553123
XM_039791463.1 mRNA downstream 38759 11936414 ~ 11943239 (-) False LOC120553245
XM_039791462.1 mRNA downstream 38826 11936414 ~ 11943172 (-) False LOC120553245
XM_039791460.1 mRNA downstream 40658 11936414 ~ 11941340 (-) False LOC120553245
XM_039791461.1 mRNA downstream 40659 11936414 ~ 11941339 (-) True LOC120553245
XM_039791464.1 mRNA downstream 40664 11936414 ~ 11941334 (-) False LOC120553245
XM_039792458.1 mRNA upstream 15090 12093538 ~ 12098305 (-) True LOC120553762
XM_039792485.1 mRNA upstream 237699 12316147 ~ 12325770 (-) True copg2
XM_039791189.1 mRNA upstream 249218 12327666 ~ 12329999 (-) True ucn3l
XM_039791120.1 mRNA upstream 255496 12333944 ~ 12349260 (-) True si:dkey-117n7.5
XM_039791002.1 mRNA upstream 275196 12353644 ~ 12412870 (-) True col7a1l
XR_005638137.1 other downstream 133057 11838944 ~ 11848941 (-) False cracr2ab
XR_005638189.1 other downstream 305166 11624009 ~ 11676832 (-) False pcloa
TU308180 other downstream 1000739 10980198 ~ 10981259 (-) True G227197
TU308019 other downstream 1459036 10513494 ~ 10522962 (-) True G227082
unassigned_transcript_1485 other downstream 1785565 10196347 ~ 10196433 (-) True trnay-gua_61
TU308500 other upstream 206478 12284926 ~ 12288154 (-) True G227429
TU308872 other upstream 1441817 13520265 ~ 13529778 (-) False LOC120553470
TU308919 other upstream 1573214 13651662 ~ 13659272 (-) True LOC120553486
unassigned_transcript_1491 other upstream 1731159 13809607 ~ 13809679 (-) True trnak-cuu_13
TU309376 other upstream 2981555 15060003 ~ 15061429 (-) False znf800b

Expression Profile