RNA id: XM_039791456.1


Basic Information

Item Value
RNA id XM_039791456.1
length 4039
RNA type mRNA
GC content 0.43
exon number 15
gene id slc6a1l
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11966470 ~ 11981128 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTTCAAAATACAGCATAGGCTACAGGAAAGagttgcaaaatcaaaaacGGCTTTTCGGGCAGCAGATACACAGTGGCTTCCCATGGGCCCGGAGAGCCGGCTTGAAGCTTTTCAAAGTTGACTCAAAGATGATATTTCTTCCTTTGGATGTTAAGTTGAAGTTTCAAGACTTTGTGCCGTAGAGAACTAAAGCTGATGACCTGACAGAGGACTTGGAAATCTCTCAGCTTTTCTGCACATTCAGTGTCTGCACATTGTTCTGAATCTGTCGAGTCAATCACCAAACTCAGTGTGAGAGGCTCAGCCAGACAGGACCAGAGACTTTAATTCGTCACCATAGCAAGCTGTGACGACTGAGGGACTTACTGACCCCACTGGACTGTAGTGGTCCCACCATGGGGAAGACTGGGCAGAGTACAGTGGACCTAAACTCCCCAACAGAGGTCAAACAAGCCGTTCCCTTTGAGGAGCTGGACCCTGTGGTGCCCtctgcagataaaaaaaagaataaagaagaGCCACCTGACAGGGGAAGCTGGAAGGGAAAGTTTGATTTCCTGCTGTCCTGTGTGGGATACGCCATTGGCCTGGGAAATGTCTGGAGGTTCCCTTACCTGTGTGGCAAGAACGGTGGAGGGGCCTTTCTGATCCCGTACTTTTTGACCCTGGTGTTTGCTGGGATACCTCTCTTCCTCTTGGAGACGTCTCTGGGACAGTTCACCTCAGTGGGAGGGCTGGGGGTGTGGAAGCTCATCCCTATGATGAAAGGTGTTGGTTTAGCTGCAGTGGTTCTGTCCTTTTGGCTCAACATCTACTATATTATCATCATTGCCTGGGCACTCTACTACTTATTCAACTCCTTTGGTTCGgaaCTGCCTTGGCAAAGCTGTGATAACCCCTGGAACACAGATAAATGTTTTTGCAACTACACTCTGACAGATACCACGAACCTGACCAGTGCTGTCACTGAGTTCTGGGAgcGTAACATGCACCAGTTGTCCAGTGGTCTGGAGGAGCCAGGAGAGGTTCGCTGGCCCTTAGTGGGCACTCTGGCACTGGCCTGGGTCCTTGTCTATTTCTCAATCTGGAAAGGAGTGGAGTGGACAGGGAAGGTGGTGTATTTCTCAGCCACCTATCCCTACGTCATGCTGTTCATCCTGTTCTTTCGCGGGGTCACTCTGCCTGGAGCCATAGACGGGATCCTCTTCTACATCACTCCAGACTTCAAAAAGCTCATCAAATCTGAGGTGTGGCTGGATGCAGCGACTCAAATCTTCTTTTCCTACGGACTGGGCCTGGGCTCACTCATCGCCCTGGGGAGCTACAACCCTTACAACAACGATGTGTACAGGGACTCCATCATAGTGTGCTGCATTAACTCCTGCACCAGCATGTTTGCTGGCTTCGTCATCTTCTCCATTGTAGGCTTCATGTCCCATATCACTAAGAAACCTGTCCAGGAATTAGCAGCATCAGGTCCAGGTCTGGCATTTTTAGCTTACCCTCAGGCTGTCACCCAGCTGCCCATGTCCTCTCTGTGGGCCATCCTTTTCTTCTCCATGCTTATGATGCTGGGCCTGGACAGTCAGTTCTGCACAGTGGAAGGCTTCATCACAGCTCTGATGGATGAATATCCCATGGtgctgaggaagaggaagaaaatcTTCATCCTCATTGTGTGTTTCATCTCCTTCATCATTGGCTTCTCCAATGTCACACAGGGTGGTCTGTACGTGTTCAAGCTGTTTGATTACTACTCGGCCAGTGGGATGTGTCTTCTCTTCCTCGTCTTCTTCGAAACCGTTTCCATAGCCTGGTTTTATGGAGCTGAAAGGTTTTATACGAACATTGAGGACATGATCGGCTATAGGCCATGTGGCTGGTGGAAGCTCTGTTGGAAGTTCTTCACTCCGCTGATCTGCCTGGGGGTGTTTACCTTCAGTGCCTTTGAGATGACCCCTCTGACGTTGGGGAAGTATGTGTACCCGCTGTGGGGCCAAGTGATTGGCTGGTTCATGGCTTTGTCTTCCATGATACTGATCCCAGGCTATTTTATCTACATGTTCTGCATCACCAAGGGCAGCATCAAACAGCGTTGGCGGAAGATGACAACTTCCCAGGAGGATGAAAAGCCATCAGGGCATGAAGAATTTACACACATGGGGAACATGGGCGAAGCTCCTGTCTAGCCAGGATTGTTCAGGTCGAAATAATTCCCCTGTATGCCAGGACTTTCAGTAGTCAACACTGAAATTTGCCATTTGGACAGATGGAGCCTTGCGCCGCATTTTTCTGTGATGTTTTCCTTTATATTAAATTGTGCCGAAAAATTCATCTGAACAATAGAGTTATGATGGATAAACTCAGGAGTGACATTGGATATTAATGAACACTCCCCCTGTCAATGATTGGCCAAATTAATATGATAAAAATGGTGACCttgccctttttcttttttttaaccactgaTTTTTATTACCATGCCTTTTATCTTGGGGGGGTACAAAACACATTGTatagttaaaaacaaatcaggAACTATGTCAGAGGAAACATTTCAAATTTTGAAACTTACtattcttcaaaacttgagttCCTATTGACATGTGAACCAAAAAGCTGTGTAGGCGGGTCAGACTGCTCCAGACTGCTCCATCTCCACAGCACCTGATGGCATCCTGGGAGAGTGAAATAGGAGTAGGAATTTCAGAAGACGTCTTCACAGCATTTACATGACATGGCATGAGTTAATTCAGTATAAGGTCATACATAGACTCCATTATTCATGTGTTAAATTGTACTTTTACTACCCATCCTTATCACTTGTATTCAATGCAAACAATCTGATGGAATGCTGGCTCGTATGTTTTAGTTCTGCACCAGACTCTAGGTTTTGGTCAGAAGTGTTTCATTGCTACTCAGATGTTAATGGATTTGAGGTCACAACAGCTGGAAACTCTAAGTCattggaaaactttgtcaatGCAGTATGGAATGTTCATTCTCAAGGTCTGGAACAAAGGGACATCACCCTGTTTGGAACCTGGCTCACAGAGTTCTCTAGTTCTTTATGTATGGAGAAAATCTTATATGAGATGTCAGGGAAAGCAAGTTAAACATTTGTCTTCATATACTTTTCAAAACACACTATAATTGTATAAACAGATGACCATCGAATCCTATGAAGAAGagtacacaatttttttttttgcttccttATATGTGAAAGGAGGGATGGGAGGAGGCAGGTAATGTTCCTGTTTGTTAACCGCATAATCAATatcttgtcttttttctttctgaaaaagttataaataagatatttaaaaatgaaaaatgttgccGAAAAATCCGGCAAATAAAAGTAAGAAAATGAGGGTCACTTTTGATAAATTTAGAGGATAGATTTCCTTTTGCAGTAAGAGTAAACTCTGACCGTAAATTGAATGCTATAGAATCAGCATTGAACCTGTGTACATATACCACATTTATGTATGATGTAAATCTTCCCCCTTACTTGTACAATTTCTCTACTACTCAACAAAATCACAGTCTTCGTCTAAGCTTACCACAAATGTTGGAATGTTGTTGTACAGAAGCATTGAAAAAATATGGAAATCTGTTAAAACTTGATTTTACATGTAAAACTGTAAAGCATCAACGATTATTTGGTTGTGGTAGCTTGAAGAACCAACCAACCAGCCACTGTGATATTTTTGTCCAGCAGAGTTGAAAAAACCACAgagttgaaaaaacaaacaaaaaaaacatttataatgtATGTATTGATTAAGTTGTACAGGCTATTCACCTTAGACAGTTTTTCAATTAACACTGCTTTGAGATAAGTTTTGAATGATGTTTGATAAAAATATGTTATGTTACCGTAGAATGATCTGTTTTGACAGTTGGAGGATTTGCTCTGACTTTACTCCAGTGTCAGTAAGAACATGTATAAAATAAACTGCACCTGGTAACTCCAGAGATGATGTAATGCTTGAGCCCCAAAAGCTTGTCCTGTTGGGATAAACCCTAAA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308264 lncRNA upstream 338527 11624235 ~ 11627943 (+) True G227267
TU308248 lncRNA upstream 505970 11460113 ~ 11460500 (+) True G227251
TU308216 lncRNA upstream 778688 11186939 ~ 11187782 (+) True G227221
TU308210 lncRNA upstream 853565 11102836 ~ 11112905 (+) True G227216
TU308377 lncRNA downstream 8972 11990100 ~ 11992952 (+) True G227338
TU308405 lncRNA downstream 262406 12243534 ~ 12243755 (+) True G227363
TU308581 lncRNA downstream 865686 12846814 ~ 12910140 (+) False plxna4
TU308594 lncRNA downstream 1006585 12987713 ~ 13043018 (+) True G227499
TU308615 lncRNA downstream 1090417 13071545 ~ 13075348 (+) True G227510
XM_039791455.1 mRNA upstream 9298 11941865 ~ 11957172 (+) True LOC120553241
XM_039791449.1 mRNA upstream 37004 11872547 ~ 11929466 (+) True tmtc2a
XM_039791457.1 mRNA upstream 101771 11852680 ~ 11864699 (+) True mettl25
XM_039791458.1 mRNA upstream 129494 11826309 ~ 11836976 (+) True LOC120553244
XM_039791459.1 mRNA upstream 129945 11826311 ~ 11836525 (+) False LOC120553244
XM_039791714.1 mRNA downstream 125824 12106952 ~ 12126052 (+) True st8sia1
XM_039792479.1 mRNA downstream 278941 12260069 ~ 12304375 (+) True atp2b1a
XM_039792483.1 mRNA downstream 278941 12260069 ~ 12304375 (+) False atp2b1a
XM_039792484.1 mRNA downstream 278941 12260069 ~ 12301324 (+) False atp2b1a
XM_039792482.1 mRNA downstream 279132 12260260 ~ 12304375 (+) False atp2b1a
TU308276 other upstream 209153 11689169 ~ 11757317 (+) True G227278
TU308205 other upstream 853565 11102836 ~ 11112905 (+) False G227216
TU308207 other upstream 853565 11102836 ~ 11112905 (+) False G227216
XR_005638076.1 other upstream 980269 10948285 ~ 10986201 (+) False impdh1b
TU308097 other upstream 1228967 10732069 ~ 10737503 (+) True G227141
TU308397 other downstream 139744 12120872 ~ 12126545 (+) False st8sia1
XR_005638103.1 other downstream 1024211 13005339 ~ 13020260 (+) False nrf1
TU308693 other downstream 1494017 13475145 ~ 13479027 (+) False yeats4
TU308903 other downstream 1693696 13674824 ~ 13685881 (+) False LOC120553473
unassigned_transcript_1486 other downstream 1787927 13769055 ~ 13769127 (+) True trnak-cuu_11

Expression Profile