RNA id: XM_039791459.1


Basic Information

Item Value
RNA id XM_039791459.1
length 2252
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC120553244
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11826309 ~ 11836976 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGACGCATCTGTCCTTGGGAAGCAGAGATTTATAGattgttatatatttttgtcaCGATTCCTTTCATGTCCCCAAAGAAGCTCAAAGGCAGTACACTGTCACTCTCACAGGTTGAACCCCTTTTTAACTTTCTCTCGGGGAAACCCCTCGGGAATACGCCAAGGATTTTCCACAGCGCACAGGAAGATAAGAATTCCAGTCTTCGAGTCCCAACGCTGAGAGACCATGACAAGTGATTCCAAGAGAAGTGGAAGACAAGAAGCGATTTCAGTTGTGGAGTTTGGTTTCTAGGCGTTTTTGGTCGTGGGTAACACTTTTTTACGGACAGTCTTACGCAGAGATTTTAAATGAGCTTGCGGGTAGGCTATATAAGGCTTCAATGGCTTGCACGAGGACACCTAAACGGGGCGCCCGGGTGTTGATGGACACACGCTGCAAACCTGCAACCTTTTAGTCGTAGCACATGTAAAAGACGGCTTTGCCATCCTGAGCCCTGCCACTAAAACAACCTGTATCACATTtatagtatggataactgtacGTTTCCCCTCGCGCAAATCCATTTAACAACTTTTCCCGGGGAATGGATTTAATTTGGTGGAAACTGTGAAACCAAACACGTTTCTTATTATGACTTTCATCTTTACGTGTATTCCAGCCACATACACGGTGGATTAGTGTTATTTTTCCACACGTTTCTATTAAAAATTCAGCTCCTCCGTACACTTTAAAGAGTTGTAGCCTAAATCTCGTCGGCTCTCATGGGACTGAGGCATTCGTCGCGTTGTTTGCTGCTACGGCGGAAGATGGCGGAGGCGGACAGCTCGGAGCGGCAACAGCCTGTCACATCCCCACTCTCTCAGTCTGCCCAGCCCTCCCCACTGCCTAAACCAGTGCCTACTACCCACCATGTGCCCTGCGTCCCCCATACGCCTCATGTAGCAGCCCTGGCCACCTGTCCCGGTCGAGGAAAGATTGCCAAGTTCATCAGCCCGGAGGAAATGACATCACGGGACTATTACTTCGACTCTTATGCCCACTTTGGCATCCATGAGGAGATGCTGAAAGACGAGGTGCGGACGCTGACCTACCGGAACGCCATGTACCACAACAAGCATGTGTTCAAAGATAAAATCGTCCTGGACGTTGGTAGCGGCACAGGGATCCTCTGTATGTTTGCTGCCAATGCCGGCGCCAAACACGTGTATGGGATTGAATGTTCAAGCATTTCCGAATATTCCGAGAAGATTATCAAGTCAAATCACCTACACAATGTCATTACCATCTTCAAGGGCAAGGTGGAGGAAGTGGAGCTGCCTGTGGAGAAAGTGGACATCATAATCTCAGAGTGGATGGGCTATTGCCTGTTCTACGAGTCCATGCTCAACACCGTCATCTTCGCCAGGGACAAATGGCTGAAACCTGGAGGCCTGATGTTCCCTGACAGAGCAGCTCTCTATGTGGTGGGCATCGAAGACAGGCAGTACAAGGACTTCAAGATTCATTGGTGGGAAAACGTGTATGGATTCGACATGAGCTGCATTCGCAATGTGGCCATCAAAGAGCCTCTGGTGGATGTGGTAGATCCCAAGCAGGTGGTGACTACTGCCTGCCTCCTAAAGGAAGTGGACATCTACACTGTGAAGCCAGAGGACCTGTCCTTCACCTCAGCCTTCTGTCTGCAGATCCAGCGCAACGATTACATCCATGCTCTGGTCACCTATTTTAACATCGAGTTCACCAAGTGTCACAAGAAGACTGGCTTCTCCACTGCTCCCGATGCTGCCAGCACACACTGGAAGCAGACAGTGTTTTACTTGGAGGACTACTTAACTGTCAAGAAGGGGGAGGAGATCTTTGGCAGTGTCGCTGTCAGGCCCAATGAGAAGAATGTGcGTGACCTGGAGTTCACCCTGGAGCTAGACTTTAAAGGACAACTATGTGAGGCCGCCATTTCCCACGACTATAAAATGCGTTAGGAACGACAACAACCTTCCAACTACCCTCAGCCCCTCTCCACACACACTTGGAGAGGGGGATGGCACCAGCTCTCCGACAAGCATTCCAGTTGGCCAGCGAGGGCGACCAGACAGATCTAATTGGATGACATCATGCCAGCACctaagtgatgtcatcaggcAAGTAAATAGGAAAGTATCTATCAGCAATAGTGCCATCACCTGTACCAACTTGATCAACTCGGGCACATCGTTGAATGTAACATCCTAAAtgaacttgattttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308264 lncRNA upstream 198368 11624235 ~ 11627943 (+) True G227267
TU308248 lncRNA upstream 365811 11460113 ~ 11460500 (+) True G227251
TU308216 lncRNA upstream 638529 11186939 ~ 11187782 (+) True G227221
TU308210 lncRNA upstream 713406 11102836 ~ 11112905 (+) True G227216
TU308377 lncRNA downstream 153575 11990100 ~ 11992952 (+) True G227338
TU308405 lncRNA downstream 407009 12243534 ~ 12243755 (+) True G227363
TU308581 lncRNA downstream 1010289 12846814 ~ 12910140 (+) False plxna4
TU308594 lncRNA downstream 1151188 12987713 ~ 13043018 (+) True G227499
TU308615 lncRNA downstream 1235020 13071545 ~ 13075348 (+) True G227510
XM_039792456.1 mRNA upstream 3658 11812027 ~ 11822653 (+) True LOC120553760
XM_039792457.1 mRNA upstream 3658 11815113 ~ 11822653 (+) True LOC120553761
XM_039791007.1 mRNA upstream 369719 11453460 ~ 11456592 (+) True pax4
XM_039791244.1 mRNA upstream 458356 11362763 ~ 11367955 (+) True lrrc4.1
XM_039791047.1 mRNA upstream 802553 11019226 ~ 11023758 (+) True LOC120553009
XM_039791457.1 mRNA downstream 16155 11852680 ~ 11864699 (+) True mettl25
XM_039791449.1 mRNA downstream 36022 11872547 ~ 11929466 (+) True tmtc2a
XM_039791455.1 mRNA downstream 105340 11941865 ~ 11957172 (+) True LOC120553241
XM_039791456.1 mRNA downstream 129945 11966470 ~ 11981128 (+) True slc6a1l
XM_039791714.1 mRNA downstream 270427 12106952 ~ 12126052 (+) True st8sia1
TU308276 other upstream 68994 11689169 ~ 11757317 (+) True G227278
TU308205 other upstream 713406 11102836 ~ 11112905 (+) False G227216
TU308207 other upstream 713406 11102836 ~ 11112905 (+) False G227216
XR_005638076.1 other upstream 840110 10948285 ~ 10986201 (+) False impdh1b
TU308097 other upstream 1088808 10732069 ~ 10737503 (+) True G227141
TU308397 other downstream 284347 12120872 ~ 12126545 (+) False st8sia1
XR_005638103.1 other downstream 1168814 13005339 ~ 13020260 (+) False nrf1
TU308693 other downstream 1638620 13475145 ~ 13479027 (+) False yeats4
TU308903 other downstream 1838299 13674824 ~ 13685881 (+) False LOC120553473
unassigned_transcript_1486 other downstream 1932530 13769055 ~ 13769127 (+) True trnak-cuu_11

Expression Profile