RNA id: XM_039791460.1


Basic Information

Item Value
RNA id XM_039791460.1
length 2528
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC120553245
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11936414 ~ 11943239 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCATGATAGGAGGGAGGAGTTACATTACAATGACGCATTGACGTTTTGTGCGTGACGAACcaggaaataaaagtaaacaacGCATAGGAAGACGAAAGTGTTATGTATCGTCAGTCATCCATTCTCATTCGGACTCTGTGACTTTTTGTAATTCATAATGCATGAAGGATATATATCGCGATAAGGACAGGGACCCAGTTAGAGACAGTCTGGAAACCGATTTAGCTATGTTAGCCATCAGGGCGTCGGAGGAGGAGTCCACTGAGATGGAGGAGATGGACACCTCCGAGCCCAATTGGTGCTGGTTCTACTTGGCTGAGTGTGGAGTGTGGCATATGTTTGAGATTGATCCAAGTGCAGCCTGCTCTGTGACTAGTTCTCAGATTGAGCAGTGCTACAACAGAAACCAACGAGGTGTCATGGAATTCTACACAGCCAAGTACACCTACAGACTGGACTTCTCagTGATGCGACAGATAAATGTAACGACCGGGAAGCAGCGGCCAATCAAACGCTCCCTCCACTCTGCAACTGGCTTCAGGTTTATTTGTGATAATCTCGCCTTGCCTGTTCCGTGTCATTGGGAGAGAATCAATACAGATGAGCCCTATCAGCTCATCCAGCTGGGAAGAGACACCTATGAATTTAAAGAAGTCGCCAGACTGTATGAAAGGACCATGGATCATCCAATTAAATCTATCCAGAGGATTCAGAACCTGGACTTATGGGAATTCTTCTGCAGGAAGAAAACACAGTTGCGAAAAGTCAAGCGCACATTGGATATTGAGGAGCGAATGCTGTTTCATGGCACGGGACACAGCAACATACAAGCTATATGTACATTTAACTTTGACTGGCGGCTGACAGGAAGCCATGGTGATGTCTATGGCAAAGGGAGCTACTTTGCCCGGGATGCCAAATACTCCAGTAAATTCTGTCACACCACAGGGAAGCACCACACCACCCTGCAGAGACACGGACTCGCCCCACCAATATTTGCTAGTGAGCCGTCCTACAAGACCATGTTCCTGGCCAGAGTGCTTGTTGGAGAATACACGGTCGGTCATCCTATGTACTGCAGACCGCCCTCCAAGGATGCCAGCTTCACCAACTTTTATGATAGTTGTGTGGACGATATGGCCAATCCAaagatttatgtcatttttgaCAGCAATCAGATTTACCCAGAGTATCTGATTGAGTTCTACTGAAGCCTAACAAGAAGACTTTTCATGGAAATATTTCGGATACATAATCAAATGACGGGATGAAAATTGGAAAAAGAAGCGGCTTAATGGACATTTGCCTTTTCGTTGCAGTCGGATCCAGTGCCTAACTGGAGCATGGGTCATCTAAAGTGcctttgggggaaaaaaaccaaGAAGACAATAAAGACTTTGTGTACagtttgtactgtacagtatattctaAGACGGGAACCTTGTGGTCGGAATGTTTCTTTGACGTAAAAAACGAGGAAAATACTGACGAAAGATCAGTCTTTGTGGCAAATTTTGTATTAAATGCAAAAATCTGCGCTTGCTTGTTCAATATCTGTGCACAGTTGTTTTAAAATAAGAGTGGCACTTTGTAGGTAATAAGTGATGTCCTGCCATCGGCTACAGCCCCTCCACATCCACAGTGCCACGCATGGGCTTATTTACAAGTCATGTAGACATAATTCCAAATGACGAAACCAAAAACCACACCATGTTTATTCCTGCTCACTCTTTCAGCAACGTGACCTGTCATTTAGGGACATCACCATCTGTGTGTACCTAGTACAACGTTTTATGTAggcatggattttttttttttggtaaaaaaaacacgcttctacctcttctttttttttttttaaactagcaTGGACTTTTCCCCCTTTCCATGAAAGGTTTTGTAATTGTGTCACAATGACATAAAGTTGAGATGTCGTGTTCACTTGTGGTCCTTGAGCAATATGTTTCTGTGTATCTTTTCTGACCATTGACCTCAATCTTCAAGATAATTGACAATGGCCGAGGCTGGATTTTGTATGCGTTTCATTCAAAACCAAAACAAGATCAGTTCTAGCATCACATTTGACTTAAAACCATCTGAGTGTGATGTCACCACCTGCTAATAAGCAGGTTAGCTTTGCACCTGGTGTAAATTTATCTAAAAAACTGAATGTAGCCAGCACATGTATAGTACTGTAATGAAAGTTAACCACCAAATGTAATATtgctttgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtagtaACACATTTGCCACAAGGTGGCGTAACAGTCACATAACACCACAGCTGTGTGTTAGTGTAGGGGTGTATGAAgccatatatgtgtgtgtctgtagtttGCATATGTCACAACTAATAAACTAAAACAATTCCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308452 lncRNA downstream 29594 11895646 ~ 11906820 (-) False LOC120553249
TU308456 lncRNA downstream 29594 11895646 ~ 11906820 (-) False LOC120553249
TU308458 lncRNA downstream 29594 11906248 ~ 11906820 (-) False LOC120553249
XR_005638138.1 lncRNA downstream 29596 11895643 ~ 11906818 (-) True LOC120553249
TU308429 lncRNA downstream 104737 11831029 ~ 11831677 (-) True G227384
XR_005638139.1 lncRNA upstream 2990 11944330 ~ 11949201 (-) True LOC120553250
TU308476 lncRNA upstream 25312 11966652 ~ 11969478 (-) True G227407
TU308577 lncRNA upstream 698094 12639434 ~ 12639775 (-) True G227488
XR_005638105.1 lncRNA upstream 958974 12900314 ~ 13004455 (-) True LOC120553123
XR_005638106.1 lncRNA upstream 960858 12902198 ~ 13004455 (-) False LOC120553123
XM_039791465.1 mRNA downstream 47 11934128 ~ 11936367 (-) True LOC120553247
XM_039791467.1 mRNA downstream 83457 11849386 ~ 11852957 (-) False ccdc59
XM_039791468.1 mRNA downstream 84112 11849064 ~ 11852302 (-) True ccdc59
XM_039791450.1 mRNA downstream 87473 11837248 ~ 11848941 (-) True cracr2ab
XM_039791443.1 mRNA upstream 40658 11981998 ~ 12083787 (-) True iqsec3a
XM_039791446.1 mRNA upstream 40658 11981998 ~ 12078448 (-) False iqsec3a
XM_039791447.1 mRNA upstream 40658 11981998 ~ 12064993 (-) False iqsec3a
XM_039791448.1 mRNA upstream 40658 11981998 ~ 12032661 (-) False iqsec3a
XM_039791445.1 mRNA upstream 44023 11985363 ~ 12083790 (-) False iqsec3a
XR_005638137.1 other downstream 87473 11838944 ~ 11848941 (-) False cracr2ab
XR_005638189.1 other downstream 259582 11624009 ~ 11676832 (-) False pcloa
TU308180 other downstream 955155 10980198 ~ 10981259 (-) True G227197
TU308019 other downstream 1413452 10513494 ~ 10522962 (-) True G227082
unassigned_transcript_1485 other downstream 1739981 10196347 ~ 10196433 (-) True trnay-gua_61
TU308500 other upstream 343586 12284926 ~ 12288154 (-) True G227429
TU308872 other upstream 1578925 13520265 ~ 13529778 (-) False LOC120553470
TU308919 other upstream 1710322 13651662 ~ 13659272 (-) True LOC120553486
unassigned_transcript_1491 other upstream 1868267 13809607 ~ 13809679 (-) True trnak-cuu_13
TU309376 other upstream 3118663 15060003 ~ 15061429 (-) False znf800b

Expression Profile