RNA id: XM_039791505.1


Basic Information

Item Value
RNA id XM_039791505.1
length 2136
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC120553267
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13121512 ~ 13125815 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCGGAAGTTAGGAGTATTTCCTTAGCTAGCTACTCATTCCTCATTCAGATGAATGCAAAACtggtattttgtttattttctagTCGTGTTTAAACTAAGAAATGGCGTGGAAAAACAAAGGTTTGGGTTCCCCTCTTCCTCCGGCCTCCTTACATCTCCTCGTCCCGCCAGTCAGACTAATGTCTGCTTTCATATGGAAAATAGTACAGCAGCACAGTGTGATGCAGTACGACAAGCTGGTGGACTTCATCTGTTTGGCGACAGAGATCGTCCCAGAGCTTCTGAGTCCCAGCCACAGAGCTCAGCTCATCCTGGGCCTGAGAGCAAGGCTGGTTCTGGAGCTGTGTCGTGGTGATGGCGTCGCCAACCTGCAGACCATCCAGAGTCACCTGGATAAGATTCACACCTGCAGCGCTGAACTGAGCTCCACTGATCAGATGGCCAATGGTGATATACTGAAGACCTCTTACACCAACTTTGCCAGCCTGGTTCAGAACATTTTGAATGTTCCTTTTGAAAAGGAGTTCTTCTTCCAAGAGGTGTTTCCTGCAAACTACGGCTCTAATTATGACCAAAGACTGCAGCAGCTGGTGTCTGAGTTCCTGTCCAGGCTGGAGCATCTGCTGCCCGTACCAGACCTGCAACAGACAGCAGCATGGCTCACAGAAACAACATCTGTGTCAGAAGAATTAGGACAGCATCTGTCTGAACCCTTTGCCCTGAAGACTCTGCTGCTTCATCACAGACAGTCAGGGACTCTCAGCTCTGCTCCTTCCAGCAGTGAGGGCGATATCGTTTTGTCCACTCTGGCCCTCCCTGCTCGATCTGGAGTGGAACGGTTTACTGAGTCTTACAGTGAGGATGATGATTATGACAATGAGGAAGAGACCCTGGCATCGGAATATTTAGAAGAAGACTCGAGTCGAAGCTCAGACGCCACTGCAGATGATTTGTTGCCAATTAGGGAATCAGGTCCTCTGTCGCGTTTATTCATCTGCCCTCAGTGTTCATTCGCTCACCTCCTGAAGAGAAAGGTCCAAGAGCACATCCAGAGTGAGCACCACATAGTAACTCCCATTCAGAAAAAACTATCTGTGAACAAAGCCAGAGCAAAGGCCCAGCAGAAAAGTAAAGACATGACCAGTGAAAAGAAGAACGTAGAAGGCAACTCCGGGATAAAGAGGAAACATAAACCAAAAAGCGGTGTTAGAAAAAAGCGTGAACGCAAGCAGAAGAAGGACAACTTAGAAAACAAGGAACGACGTAGACGGAAAGAGCCCACGGGGGACGACAAAAGGTTTCTGAGCACGCGACCTGTCAACAAAAACTTCACAGAGGAAGAAACCAAATGCCTGAAGTGTGAAAAGGTTTTTGAACTTCCAAATCAACTTAAGACTCACATGAAGCTTCACAGCTTTGCCTACAGCTGCACCCAATGTGAGAAGGGCTTCACCAGCTCGTCAGGTTATTATCAGCACCAGAGACTCCACAAGAGAGGACGGATATTCGTCTGCAGCCAGTGCAACAAGGGATTCCTGTGCAACTATTCGCTCAAGCAACATGAACGCCTGCATGAAGGCCCCAGCAACCTGTGTACGATCTGTGGGAAAGGGTTCAGCAAAGCAGGGATTACAAGACACATGCAGATGCACAAAGGGGAGAAGAATTACTTGTGCACCACATGTGGGAAGTCCTTTTTGTCCTCCGGGGAGCTGCTGCTGCACACTCGGTCCCACACGGGCGAGATGCCGTACACCTGCACACACTGCGGGAAGGGTTTCTCCAGCAAGAGTCACCTGATTGTGCACACGCGCTCTCACACGGGGGAGCGTCCATACCTGTGCTCGGAGTGCCCGAAGCGTTTCCTTACACTGAACTGCCTGAAAAGACACACGCTCAGCCACAATGGGGTGAAACCATTTAAGTGTCCAAACTGTGAGAAAGAATTTTCCCAGAAGGGGAACCTGAAAAGACATTTGGCAACTCATAAACTTGACACGTAACGTGAGGTTGTTAGAAAGGAGAATGTAGTCATAAATAATGCCTTGTCTAGTTTTTTTGAAAACCCCAAATGAAGTATTATTGTGTAATCCGTAGTAACAATTGGAAAGTAAAGTATTTGAAATTCCTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308615 lncRNA upstream 46164 13071545 ~ 13075348 (+) True G227510
TU308594 lncRNA upstream 78494 12987713 ~ 13043018 (+) True G227499
TU308581 lncRNA upstream 211372 12846814 ~ 12910140 (+) False plxna4
TU308405 lncRNA upstream 877757 12243534 ~ 12243755 (+) True G227363
TU308377 lncRNA upstream 1128560 11990100 ~ 11992952 (+) True G227338
TU308813 lncRNA downstream 367586 13493401 ~ 13493861 (+) True G227639
TU308823 lncRNA downstream 390667 13516482 ~ 13531547 (+) True G227646
TU308840 lncRNA downstream 428435 13554250 ~ 13554826 (+) True G227662
TU308978 lncRNA downstream 830882 13956697 ~ 13965492 (+) True G227734
TU308980 lncRNA downstream 841728 13967543 ~ 13969687 (+) True G227736
XM_039792307.1 mRNA upstream 39268 13077157 ~ 13082244 (+) True klhdc10
XM_039792308.1 mRNA upstream 40623 13077157 ~ 13080889 (+) False klhdc10
XM_039792309.1 mRNA upstream 40848 13077157 ~ 13080664 (+) False klhdc10
XM_039791209.1 mRNA upstream 98565 13005339 ~ 13022947 (+) True nrf1
XM_039791211.1 mRNA upstream 98565 13005339 ~ 13022947 (+) False nrf1
XM_039791503.1 mRNA downstream 213244 13339059 ~ 13353840 (+) True dcp1b
XM_039791436.1 mRNA downstream 233072 13358887 ~ 13443536 (+) False cacna2d4a
XM_039791428.1 mRNA downstream 235393 13361208 ~ 13443536 (+) True cacna2d4a
XM_039791432.1 mRNA downstream 235393 13361208 ~ 13443536 (+) False cacna2d4a
XM_039791429.1 mRNA downstream 235393 13361208 ~ 13443536 (+) False cacna2d4a
XR_005638103.1 other upstream 101252 13005339 ~ 13020260 (+) False nrf1
TU308397 other upstream 994967 12120872 ~ 12126545 (+) False st8sia1
TU308276 other upstream 1364195 11689169 ~ 11757317 (+) True G227278
TU308205 other upstream 2008607 11102836 ~ 11112905 (+) False G227216
TU308693 other downstream 349330 13475145 ~ 13479027 (+) False yeats4
TU308903 other downstream 549009 13674824 ~ 13685881 (+) False LOC120553473
unassigned_transcript_1486 other downstream 643240 13769055 ~ 13769127 (+) True trnak-cuu_11
unassigned_transcript_1487 other downstream 644251 13770066 ~ 13770177 (+) True trnal-caa_20
unassigned_transcript_1488 other downstream 649172 13774987 ~ 13775059 (+) True trnak-cuu_12

Expression Profile