RNA id: XM_039791509.1


Basic Information

Item Value
RNA id XM_039791509.1
length 1712
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC120553268
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 6976407 ~ 7012280 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGGATTCTCCTTGCGCCGCGGTTGTCTTTTCCAAGTGAATTCTCCTTCAGATCTTTCCCTGACCccgtgacgtgacgtgacgttTACCAAGGAGAAGTGACAATTATCAACCATGTCTGACACTGTGGCTCCGATGCTCTCTGTGTTCCCCAGTCGGGCTCTGGTCGATGAGAATTTCAAGGTGGTGGTGAAGAATCTGCCTCCGGGATGTCCAGTGACACTTCACTCCCTCCACCAGTGTGAGGACAAGCACTACTGGGAGGCCTACGGCCACTACACCAGTAATCACAGAGGAACCGTGTCTGTTACAGATGATTTGAGTTTTGGGGGAACGTACACAGGAAAAGAAGCCATGGGTTTGTTGTGGAGTATGCGTCCCGTCCCAGGCAGCCGTGAAGGCCTCAGgttgaggaggaggaACGTCTGCAGCCCCCTGCTGGTCAACATCTCCGTCTACAGGGGACATGTAGTGGAGGGCTTCAGGGAGCAGGCTCCTCTGGCCTCGTCGCTCACAGAGAGATGGTACATGGCTCCAGGGGTCCAGAGGACCCAAATCAGAGAGAAGGGAGTGCGAGGGACTCTGTTTCTACCTCCAGGTCCAGGTCCCTTCCCCGGCATGTTGGATATGTGGGGGGGCGGTGGAGGGCTGGTGGAGTATCGTTCAGCCTTGCTGGGGTCTCATGGTTATGCTTCTTTGGCGCTGGAGTATTTTGCCCCTGGGGAGCTGAAGTCAGCAGACTTAGAGTTCAACTATTTTGAAACAGCATTTAATATCGTGAAATACCATCCTCAAGTGATGCCGGACAGAGTTGGAATTTTTGGTCTTTCCATCGGCGCCGTTTTGACCATTCTGTTGGCAGCGGAGAGCAGCTTTGTCAAGCCTTCCTGTTGTGTTTGTATCAGCGGCAACCACCTTTATCCACGGGGGGCGACCATCAAAGAAGTCCATCAAGTATTGAACATGAAATCTCCCAAGATACGCCTGGATGAGAACAACTATGAGATATGGCGAGATATGGGTCTACCGATTCCTGATGATCTTGCACACAAAATAGACGTGGGGAGAATACACTGTCCAATTATGTTGGTGAACGGCCATGATGATCAGAGCTGGGCCACAGTGGAGTCTTCTGACGATATGGCCCAGATGATGCGTGCAGCAGGGAACCTGCACCTGCTGACCAGACTTCACTACCCTGATGCTGGACATCTGATTGAGCCGCCATACACACCTCTCTTCAGAGCTACTAAGTTTGTAAAGGACACAAAAGAGAAAGTGATATTGCTGTGGGGAGGACAGACCAAACCCCATTCAGATGCTCAGGAAGACTCCTGGAAGAAGATCTTGGCTTTTCTGGAGCAGAATCTGTACTCCAGCCCAACTCTCAAAGCCAAGATGTGAATGACTACACAAGCACAGATCGCCAACGTATCACTGCTGGAACACAGAGTGTTGTGTGACCGGGCCATGTTAGTACATTAACACTACTGTTCATTGGTTCCTCACTGTGTTGACCACGTGCCTTTCTTCTGATAGCTGAGGTTGTTCGTTTTGTTCAAATAGTGCCTCTTCCTTCTGAGCAATACATTTTAGTTTAATTATCTGCAAGCCTCAACCTTCGACAGTAATATAAATGTAAgttattgtatgttttgtatgtttggataacaatttttattatatattaataatattattaaagtgttcat

Function

GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0016790 thiolester hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306694 lncRNA upstream 291504 6682718 ~ 6686625 (+) False prkcq
XR_005638192.1 lncRNA upstream 477069 6429094 ~ 6501060 (+) True LOC120553621
XR_005638108.1 lncRNA upstream 688230 6183044 ~ 6289899 (+) True LOC120553126
TU306637 lncRNA upstream 880221 6097678 ~ 6097908 (+) True G226097
TU306625 lncRNA upstream 1058715 5919094 ~ 5919414 (+) True G226085
TU306925 lncRNA downstream 145211 7157490 ~ 7157887 (+) True G226292
TU306949 lncRNA downstream 201113 7213392 ~ 7216386 (+) True G226306
TU306966 lncRNA downstream 255230 7267509 ~ 7268219 (+) False G226316
TU306965 lncRNA downstream 255548 7267827 ~ 7268758 (+) True G226316
TU306967 lncRNA downstream 256825 7269104 ~ 7270753 (+) True G226317
XM_039791819.1 mRNA upstream 243720 6719108 ~ 6734409 (+) True gnsa
XM_039791185.1 mRNA upstream 291490 6660520 ~ 6686639 (+) True prkcq
XM_039791186.1 mRNA upstream 291490 6660520 ~ 6686639 (+) False prkcq
XM_039791179.1 mRNA upstream 341448 6583234 ~ 6636681 (+) False sfmbt2
XM_039791779.1 mRNA downstream 39576 7051855 ~ 7073003 (+) True cd9b
XM_039791780.1 mRNA downstream 47006 7059285 ~ 7073003 (+) False cd9b
XM_039792272.1 mRNA downstream 77061 7089340 ~ 7100004 (+) True dclre1c
XM_039792095.1 mRNA downstream 103683 7115962 ~ 7144005 (+) True lamb1b
XM_039791418.1 mRNA downstream 228573 7240852 ~ 7255885 (+) True vezt
XR_005638175.1 other upstream 1604926 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other upstream 1604926 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other upstream 1604926 5283759 ~ 5373203 (+) False abcc9
TU306390 other upstream 2320160 4657444 ~ 4657969 (+) True G225894
unassigned_transcript_1479 other upstream 2781314 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1480 other downstream 134990 7147269 ~ 7147340 (+) True trnaw-cca_35
TU307013 other downstream 306261 7318540 ~ 7321049 (+) False snrpf
XR_005638075.1 other downstream 310791 7323070 ~ 7332259 (+) True amdhd1
TU307011 other downstream 384215 7396494 ~ 7400399 (+) False nrip2
TU307294 other downstream 1414412 8426691 ~ 8432697 (+) True rps16

Expression Profile