RNA id: XM_039791519.1


Basic Information

Item Value
RNA id XM_039791519.1
length 2371
RNA type mRNA
GC content 0.53
exon number 14
gene id c23h12orf56
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7031212 ~ 7048093 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCGAGACAGCGGCAGTTTACCTGCTCAGTGTACGTTAACGGGACAGAACGAGCACCAGCACCTGCCCGGTTAGTTTCTATCTACGTAAAGTTTTAACCTAACGGATGGAAAGCGACACCGGATCACCTGCCCGGCGCCAAAGTGGAGGTTAGCGTCACTAACTTGTCTTTAACTGCTCCGCCGGTACCGCCATGGCTCGGACCGGCTCCGGTGCCCTCCTCTCCCGCAGAAACATTAAACTGGACTCCTTCCTGAAGCGGAACACGGAGCGGATGGTGTACGAGCGCATCCGAGCCTATGAACCGTGCGTTGTGAAATCGGCGACCATCAATAAGGTGTATATGCATGTGGTGCTGAGCGACGAGCGCGTGTACCTAACCGAGTACCCACCGCGCACGCTCACTGAAGCCTTTTGCTTCAGAGACGTGCACGACATCGAGCTGGTCAATGACCTCCCAGATTTCCTCCGTGGGAAGGACCGGGAACTCTGCCAGCACATTCGAATCACCTACATCACTGACAAGCCTGCAGCGAggggctgtgattggctgagaagAGACAGGAGGGTGGGACTTCCTCCTCGCAGACCAAGCCTTTACCCAACAATAACACAAACCttagaagGACATCCTGTACACAGCCCCAGTGAAATGGGGACAGAGGAGGTTCACATGTTACCACCCACACGTTCTGCCTCCTGTCCAAACCCGGAGACTCTGGGCCTCCTGAGGGTCCCACACCCTCCCACCCAGTCTGTCTCCACAGCACCCTCCCTCTACTCACCCAACGGCTCCCCCACCTCTCCGTCACCCTCGAATCACAGACTGAACATCCCTGACACTGGCCAGCTCCAGAGAATGATCGGTTCAGTTCTGTCTCGCCTGCTGAGAAGAGACTGTGCGAACAgcggagaggagagggaggctgAGCTGCATCTTTACGCAATATCACACACGTCCAGACTTTACCTCCATATACAGAGCTCATGGAACAGCTTCATTATTaggtCCACTCTGTTGTTAGACACGCTCTACAGAGGGAGGTGCAGTGCCTCGTCTGACTCCTCTTCTAGAAAGCAGCTTCCTGCCATCAGctgcgAGCGGACAGCTCACCTGTTTGGTCAGCTGAGCTCTGAGCTCCTGCAGGAGGGGATCCGTGTGGAGAGTCTctacctgctgctgcaggagctGAGAACTGCTGCTCGCCATAACGTCGCACTACGCCGACTCTTCTGGAAGTCCAGCGAGGTGTGCGTCTTCCTGGTTCAGACTCTGGAGGAATCTCTGCACGGCTGTCAGAGCCTCAGTGGAGTCCACACAGAAGATCAACTACTACTGAGCACTCTGGTCGTGCAGACACTCGCCGCCATGTTCAGAGAGACGGACGTCGAACCAGCCCGACTCAACCTGCTCTCTGCCAAAAAAGGTGCCCTGGCCTCCAGAATGCTGCTTGCCTTGATATGTGATGCAGAGCTACAAACACAGGTTGACTGTGAGCTTCAGGCCTTACTAGCTGAGTATCTGGATGCTGCCTGCTCTTTGCTCTTCGAGCTGCTGCTTTTAGGCCACGAGGCCAGCAGATGTTCCTCTGCCGACAACTTCCTGTCTGTTGGCTGGATCCTCCGCGTCCTGCAGCCTCATCCTCACCTGTTGTCCTTCATCAGTTACCAGGCCCAGCAGGTGGTGCTGGTTTTGTCAGACGGGCAGGAATCCTTTCTCAGCCCCTTTCAGTCTGTTCTGCTGTTCCAGCGCTGTCGCCTCCTGCTGGCCTGCCTGCAGTACAACAGCCAGCTGGCACAGCACCTCCGATCCCACTTCAGAGAGGAGTTCAGGTACTCTGTGAAGCTGTCATGTGCTCAGGAGAAGCTGCCGCCTCATTACCCGATCAGCCGGCCGACTCTTCGATTGGTCCAGCAGATCCTGACTCTTATTTTGCACAGataatcacacacaaacacacgtgcaCTTACACCTGAAGACAGGACTGTGACAGTGTGTGCCTTTACCAAAGTCTAAGTACTTTTTCTTCAGTACTTTTAGCTGTATATTTCTGAGTTTCACCGCTGCAATGAATGAACTGAGCAGTAAATCTGCTGCGAATACAGGTTAAAACGAATGATCGCAGCAGAAATATTGGCACTGCTTTCTaccatgtgtatttgttttgttgagAAGTGTTCCTATAATGCTGTAAAGCAGAAATCTTCTGCAGGTTTCATGAGGGTTAGCCGtgctttaagctaaatgctaacatgttaaTGTTTAGTGTTACCAGGATATAgcgtttaccatgttcaccatcttagtttggcGTATCAGCAACATCTGCTAACaagcattaaacacaaacattcCTGTTGTATGACCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306859 lncRNA downstream 2254 7028748 ~ 7028958 (-) True G226244
TU306808 lncRNA downstream 104967 6924031 ~ 6926245 (-) True G226216
TU306781 lncRNA downstream 295942 6732438 ~ 6735270 (-) True G226199
XR_005638098.1 lncRNA downstream 342390 6679376 ~ 6688822 (-) False LOC120553101
TU306756 lncRNA downstream 342668 6634650 ~ 6688544 (-) True LOC120553101
TU306877 lncRNA upstream 16532 7064625 ~ 7072997 (-) True G226259
TU306881 lncRNA upstream 25800 7073893 ~ 7075706 (-) False tmem243b
TU306878 lncRNA upstream 25835 7073928 ~ 7085969 (-) True tmem243b
TU306902 lncRNA upstream 53845 7101938 ~ 7107207 (-) True G226273
XR_005638184.1 lncRNA upstream 54419 7102512 ~ 7105702 (-) True LOC120553545
XM_039792345.1 mRNA downstream 56651 6963276 ~ 6974561 (-) True ssbp1
XM_039792201.1 mRNA downstream 69118 6926311 ~ 6962094 (-) False creb3l2
XM_039792200.1 mRNA downstream 69118 6926311 ~ 6962094 (-) True creb3l2
XM_039791591.1 mRNA downstream 110600 6840140 ~ 6920612 (-) True dgki
XM_039792379.1 mRNA downstream 199500 6824521 ~ 6831712 (-) True LOC120553692
XM_039791781.1 mRNA upstream 29232 7077325 ~ 7086322 (-) False tmem243b
XM_039792273.1 mRNA upstream 38851 7086944 ~ 7089168 (-) True meig1
XM_039792296.1 mRNA upstream 105707 7153800 ~ 7160787 (-) True eri1
XM_039792297.1 mRNA upstream 105707 7153800 ~ 7160785 (-) False eri1
XM_039791826.1 mRNA upstream 114913 7163006 ~ 7208199 (-) True tmcc3
TU306782 other downstream 300430 6730307 ~ 6730782 (-) True G226200
TU306577 other downstream 1780496 5242890 ~ 5250716 (-) False LOC120553807
TU306354 other downstream 2491434 4531616 ~ 4539778 (-) False LOC120553649
TU306198 other downstream 2980021 4047316 ~ 4051191 (-) True G225751
TU306073 other downstream 3226961 3800138 ~ 3804251 (-) True G225672
TU306880 other upstream 27807 7075900 ~ 7085969 (-) False tmem243b
TU306891 other upstream 38854 7086947 ~ 7089067 (-) False meig1
XR_005638120.1 other upstream 378507 7426600 ~ 7494307 (-) False LOC120553151
XR_005638119.1 other upstream 378507 7426600 ~ 7494307 (-) True LOC120553151
XR_005638121.1 other upstream 378507 7426600 ~ 7494303 (-) False LOC120553151

Expression Profile