RNA id: XM_039791522.1


Basic Information

Item Value
RNA id XM_039791522.1
length 5379
RNA type mRNA
GC content 0.48
exon number 11
gene id slc41a2b
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24508776 ~ 24565806 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caccttatatactgtctatgcgaCACACCTGTCTATGTGCGGATTACAGCCACTATTTTCAAACCGAGTAGTACATCTTCCCACCATAGACGAGCTTTGGTGGCACTTTTCGCTCTGACGCGGCTAGTGCTTGGCTCTGGCTGGCTGTCAAGAAATAAGACTCCCATCTCTTTTCCTGTACCAAATGTCTCCGTGCCAGAAAGGCTCATGAGACTCCATTTCCAATTTCCAGCATGGATGGTGCACCTGAGCTAGTCTAAACCACTTTATTACTGTGTCTCATTTTCACACTGCTCTCATGCTGGATGACAGGAGATGAGACACTGCGGCCCTGCAGCACACCATGAGTATCCAGAGTCTGGGAGGAGCTATCGGGGATTCCCTAGGCTCTAGCCTGACGGTGCGTATGAGCGGGGCAGGCGGCGGCCGGAGCGCTCTTTCTCTGAAGCCGCCTTCCTCCGGACGGATTGCCTCTCTGTTCCAGGCCATGGTCCCCACCGGTTACACCAAGCTGCAGGAGGAGCGGCTCGCCATGGTGGACGTCGGAGCCAAGCCCGAGCCCGTCTCGCTCCAGAACGGCTACAGGCAAGAGCCGTCGCACGTAGAAGGCTCCCGACGGCTCCTGGAACGGGCCTCGCGCTCCTCCGTGACTTTGTCCGACTGCGGGGACGGAGGCTACTCCGAAACGGAGCCCATGCTGGCCGAGAGGAGGCTCTCCGGGGAGCAGGCGGACGAGGAGgcggaagaagaagaagaaggggaggaggaagggcaGAGGTCGACCAGGCAGAACATGCCCAAGGAGTCGCTGCTGGCCATGGCGCTGCAGATCTTGCTGCCTTTCCTGCTGGCTGGATTTGGAACCGTTTCAGCTGGAATGGTGCTGGATATTGTGCAGCACTGGGAGGCGTTCCAGTACATCACGGAGATCTTCATCCTGGTACCGGCGCTGCTCGGCCTCAAGGGAAACCTGGAGATGACCCTGGCCTCGAGGCTGTCCACAGCgGTGAATGTGGGCAAGATGGATTCTCCCATAGAGAAGTGGAATCTAATCATAGGCAACCTGGCACTGAAGCAGgTTCAGGCCACCGTGGTGGGTTTCCTGGCTGCCGTAGCAGCCGTGGTTCTCGGTTGGATCCCGGAAGGGAAGTTCCAGATGAGCCACGCTGTGCTGCTCTGCTCCAGCAGCGTGGCCACGGCCTTTATAGCCTCCCTGCTGCAGGGTATCATCATGGTGGGTGTAATTGTGGGTTCCAAGAAGACGGGCATCAACCCAGACAATGTAGCCACACCCATTGCCGCCAGTTTCGGGGACCTCATTACCTTGGCGATCCTGGCCGGGATAAGCCAAGGCCTCTACAAGTGCCTAGATACCTACCCATATGTGTCGTCACTGGTTTGCGCCTTCTTCATGTGTCTAACTCCACTGTGGATTGTCATCTCCTCCAAGCACCCGGCCAGCCGCACCCTGCTCTACTCTGGATGGGAGCCAGTCATCACCGCCATGCTCatcagcagCATCGGAGGACTCATCCTGGACAAAACAGTGTCTGACCCAAATCTGGCTGGCATCGTGGTGTACACGCCGGTTATCAACGGAATCGGGGGCAACCTAGTGGCTATCCAGGCCAGCAGGTTCTCCACTCACCTGCATTTCCACTGCGCTCCCGGGGAGGTTCCTGACGAGGCCAAGGGCTGCTACTACCCCTGCCGCACATTCTGGGGTTCAGGAGCCAATCATCGCTCTGCTCAGGTGCTCCTCCTTTTGGTGATCCCCGGTCACCTGATCTTCCTCTATACCATCCACCTGATGAAGAGCGGACACACCACGCTGACGCCCATCTTCATGTCCGTCTACCTGGCTGCTGCTACGCTGCAGgtgttgctgctgttgtgcaTAGCGGACTGGATGGTGCACTCCATGTGGCGGAGCGGCAAAGATCCCGACAGCTTTTCCATCCCTTACCTGACAGCTCTGGGTGACCTGTTGGGTACCGCCCTGCTGGCGCTCAGCTTCCACTTCCTGTGGGTCATAGGAGACCAAGACAGCGATGTGGGCGACTGAGGCGGTGATGGCGCGAAAGCTGCTCCTGCTCCTGCCATTGCCCCGGCTTCTCACTTTTCCTTAAGCCTTGTGGGAATGTTGGTGCCCTTCTCTCTCTGGCCAGCACATTCCTCTGCTTCACTTCACTTGACCCACATGATGGTTTGGAAACCATTTTCCTCcccctcatttttttttgtttgtttgtttttttgtacatacaaaagacattatattccaTAAAATTTTGACTTTTCTCAGTACAGATTTTTCCTCTGCATAGTTTGCACCAAAGCACTTGCATATTATATATCGATGGTCTTGTCAAGAGCCATCACCCACAGCGCTGAGGAAACCTTTGCTGCTGCGTGCTGTGGCGTTCTCTGCCAGCcaaacgtcaaaaaaaaaaaaaatctcttttctTGGTGTGTATTTTTGGGGATTTACCACGCACCGTGTCACAAACTTTGTTATCTGCCTTGTGTAATACAGCTTCGCAACATCAAGGCAGTGGAGGGACACAGAGACGGCTGGGATGGAGGCAAGAAAAGTGAAAAGTTTATCCGAGGTCAGCTGAACACGCGCTTTGAACTGCCACGTTAGCAGGTCTACACCAGCACCAGGGTTAGACGGGAATAACACACATTTGTAACGATGGCTGGAGAAGTCGACATTTCTTCCTGCGTCTACGTGTTTTTATGGTTCCGTTTTCACCAAACTCAGTTCAAGCTCTATCCATACATCTCTCCatatttttgcctttttttaatattttgagtTCTCCCACACTGTTCTCTGCAAGGATAAGGCTATACCATTGTTCCTAGCTGCATGTAAGCCAACATGCACGTGTGCAGTTCTGAgacatttctgtgttttttcttttacgTTTTCTAACCTGATTGATGTTTACATAGGGACGTAGGAACGaaagtgtcaaaataaaaatcatttgATCATTTTTAAGTTAATTTAGTTCATGTTCCAATGCCCCGCTCTTGATCAAGTTTAGAGCCCAGCAACGGTACCTGGGATACCATTGTGTTTGCCAGACACATCGGTTAGTCCTCATCCTAAAAGTGAAAACATACGGTTTGAAAATACAAACAAGTATACGAGCTGAACAGTCAAATAGTGTGTTCATATTTTGGAATGaaataacatttacatttttcttgATCGTTCAATCTAACTGGCTCTACAACCGCAATGCAAGAACAGTGCTGTTTCTTGATTTAGTGTTGCATGTCTTTCATGTCGATGATTGACTGGTAACTGACAGGCCGCTGTCGCCTCTCTCTTTTAGCATTATATCATGCACGTAGCCACCACATGTTTCAGAAGAAGAGTCAGCTGGAGACAGCAGctgtgtttccatccacttgtcaatcaaattaTCTGAAGTCCGTTCATAAACATTTGTGCGCATAAAGCCGGTGAAAGTGCGTTTCCATTAAGCGGCTTTAAAGCGGCTAAAAACGTGGGCATAATGACGTCACGTGccgagacattttaaggtgatTCCGTTTGTTTTCGCACCGAATCGCGCAACGTTCAAGCTGATGATTGCGAACAAAGTTTGCTCGCCAAAATGGATCGCGCCGTTTACCTACGAATGATTCGTATTGCACAAGTTATAACAGTgcttatgtgccagctgatagcgacatatcaagttgtagTAAGACAACGACGACGCTATCAAAACATCGCTATGATGATGCAGGTAAACGGCAGTAACAATCTCTAAAATAGCCATTATTTTTCGgtcttaaattaaatttaaaaagtctctcgtctcctcgtgcgggtgtctttgttgacacccgCCATGTCTGCAATGAAAGCGGAAATACGTGGCGGAAATGAAAACAACTTTATGGCTGGTTACAACCGTAAAAtgtaatcgcaattcattatttgttCGGCAAAGAAAGTTTCCATCAGTGTTTATCGTGTAAGCTGTTTACCGattaagagaaaatccgatgagatcGAACGTACAAACTTTGTGTCTATATCCAAGAAATTCAATCGAATATTAcagtttccataaggcattctTCATTAGATAATACTTAATTtgcataaaaacgtgtggatggaaacacgGCTAGTGTTTTAAAGCAACTCGtgaagttaacgttagcttaattaGCTATATAGCTAGCTACAGCGCACCTACAGCGCAGCGACATCTGCCATCAGATGTCCGTCAGCAAAACCAGCGGACCCTAGAAATGAGAAGCTGCTCTGGTCCAAAATCAAGGACCCATTTTTTCAAAGAATACTATGAATTTCTGTTATTATTGTCATATAAACGGCATATGGCTGTGGGAGAACGGAAAGCTACAGCCGTAGCGACGGGATCTAGGTAGAGCAGCGCTAAGTGAACGGTTAGTTATTGCTTTGCATCGACCAAGCCACAGATACTTTTACTTTCATCTTTTCAGCCTCCTATTATATAAATGTCAACAGCACTTTTCTCTCATGTAAAACAAACCATGAAATCATCTGTATGAAATGTCAACCTCCTCAttaatttcctgttttttttttttttttcttgccctctctgttatggttttggtccGGTTGCGTGCACGCAGCAGGAGCACTGCGCCAGTCCGGCCGGAAAAATTCAAACATTCCACAGTGGAGGTTTCACATGCTGTTTGCAGCGCATGTGTGCATAGTATCTACATTCATGCTCACAATTAATCCGCAGCTTTCATGTTATAACTCATTTCAGACTAATCAACATCAGTGTGAACACAACCTGATTAAACACCAGATTTCATTGGCTTTTTCAGAAGATGCCATGTGTTCAAAAGGTCAGAGAAAAGTGATCCAGATAAAGCACCCTGATTGTTAAATTGGTCGTTCTGACTCCTGGAGAAATTACATGGGGgggtgggttgggggggggaCAAGCTTACTTATCAACTCCTAAATCAAACCTTAATCCGATAACTCGGCAGCACATTGCGCGCATGGCTCTTATCAACTCCCAATGTGTGCCTCTTGAGATTCACTGGTTCCTCTCTGTCATGTCATTAATGCAAATGTCTTTCTGCAGCATTGCAATTCTGTGCAATGCTTTCCTTCTGTACTCCCTTTCAGTTCTACGACGATGactattgcatttttcattcTAAAATGATGTTTTAATTACTGGCATGGAACTATTTCTAGAGATCAAAGTTGTCAGCATCTAGAGGGTGACATCAATTTGGTTCAAAGTGGATATATATCCCTTTTTGGTATGAAACCTTTTACTTGCAGTTGTGGCTCATATGAGCCGAAAAtgtctaaataaatgtttttggaaTTTA

Function

GO: NA

KEGG:

id description
K15122 SLC41A; solute carrier family 41

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312123 lncRNA downstream 23254 24482615 ~ 24485522 (-) True G230121
TU312122 lncRNA downstream 26237 24481687 ~ 24482539 (-) True G230120
TU312121 lncRNA downstream 27097 24479707 ~ 24481679 (-) True G230119
TU312120 lncRNA downstream 29120 24479094 ~ 24479656 (-) True G230118
TU312090 lncRNA downstream 192919 24315083 ~ 24315857 (-) True G230089
TU312188 lncRNA upstream 3496 24569302 ~ 24571318 (-) True G230165
TU312194 lncRNA upstream 55113 24620919 ~ 24680361 (-) True G230170
TU312199 lncRNA upstream 68214 24634020 ~ 24663681 (-) True G230174
TU312201 lncRNA upstream 85185 24650991 ~ 24652825 (-) True G230176
TU312203 lncRNA upstream 125259 24691065 ~ 24728022 (-) True G230178
XM_039791878.1 mRNA downstream 133552 24365338 ~ 24375224 (-) False LOC120553465
XM_039791877.1 mRNA downstream 133552 24365338 ~ 24375224 (-) False LOC120553465
XM_039791875.1 mRNA downstream 133552 24365338 ~ 24375224 (-) False LOC120553465
XM_039791876.1 mRNA downstream 133721 24365338 ~ 24375055 (-) True LOC120553465
XM_039791667.1 mRNA downstream 224067 24256783 ~ 24284709 (-) True podxl
XM_039791854.1 mRNA upstream 225686 24791492 ~ 24797223 (-) True LOC120553455
XM_039791858.1 mRNA upstream 231589 24797395 ~ 24826222 (-) False aldh1l2
XM_039791859.1 mRNA upstream 231589 24797395 ~ 24823837 (-) True aldh1l2
XM_039791856.1 mRNA upstream 234723 24800529 ~ 24826222 (-) False aldh1l2
XM_039791857.1 mRNA upstream 234723 24800529 ~ 24823837 (-) False aldh1l2
TU311926 other downstream 594084 23908556 ~ 23914692 (-) True G229950
TU311924 other downstream 594084 23912101 ~ 23914692 (-) False G229950
TU311825 other downstream 796981 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other downstream 808578 23699697 ~ 23700198 (-) True G229907
TU311637 other downstream 1269203 23104760 ~ 23239573 (-) True G229716
unassigned_transcript_1528 other upstream 11144 24576950 ~ 24577021 (-) True trnap-agg_20
XR_005638196.1 other upstream 625977 25191783 ~ 25217693 (-) False sult4a1
TU312561 other upstream 1029774 25595580 ~ 25601366 (-) False LOC120553115
TU312668 other upstream 1614745 26180551 ~ 26196487 (-) False mkrn1
TU312734 other upstream 1809886 26375692 ~ 26381365 (-) True G230594

Expression Profile