RNA id: XR_005638148.1


Basic Information

Item Value
RNA id XR_005638148.1
length 6106
RNA type transcript
GC content 0.51
exon number 31
gene id ppfia2
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8565242 ~ 8793910 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGAGGCGATAATCCGCGCGCACACACGGACCCATCCGAGCCGCTGCCAGAGCTGCCTGCAGCGGGCGTCGAGACGTTATGGAGCCGCTGTCTCTCCGCGGAGTTTTCTCTCCAGGCACATCGCTGTAAGGACACACAGAATAGTCATCTGCGTGCGAGAGGGGACGCGCAAAGAAGACCGGAGAGTTGCCTtgtttgttttcacttttttttttttctctctcggaGCGTTGCGCACCTCGAGCTCTCCTCCATCTGATGCCGGGAGCGCAGCATCGGGTCAGAGGCAGATCCGAGTGCTCGCCTCGGGTCGTTTTTGAGTTTCCGTAAAGCACACCGTACCCTACCTTTTggctgataaaaaaataaacaacaacccGGATCTGCTGTGGATTGTTTGCCCATCAAAGGGATTATGATTTTCTCAGACATGAGTACGGGGACCAACTCCCCGAAGGTGCACCCGCCGAATGGGACGAGGTTTTACACATTCCAGGAGTTTGCTGCGCTGACCAAGGAGCTGAACGCCTGCAGGGAGCAGCTgctggagaaggaggaggagatctCTGAGCTCAAAGCCGAGAGGAACAACACCAGGCTACTGCTGGAGCATCTGGAGTGCCTGGTGTCAAGACACGAGCGGTCTCTTCGCATGACGGTGGTCAAGCGGCAGGCTCAGTCTCCCTCAGGAGTCTCCAGTGAAGTCGAGGTCCTCAAAGCACTCAAGTCCTTGTTCGAACACCATAAAGCCCTAGATGAGAAGgtaAGAGAGAGACTACGGGTGTCACTCGAGAGGGTGTCTGCCTTGGAGGAGGAGCtcacagcagccaatcaggagATTGTGGCCTTACGGGAACAAAATGCTCACATTCAGAGAAAAGTGGCTTCCGGGGACGGAGGAGAGGACATACTGGAGGGCAGTGAAGCTCAACAGAAGGTCCATGGCAAGcgCCTGTCCAACGGCTCTCTGGAGTCGGCCCACGAGGCGAGCCAGGTGGTGGAGCTGCAGGACCTGCTGGAGAAGCAGAACTACGAGCTGGCCCAGATGAAGGAGCGCAtgtcctccctctcctcccggGTCTCCGAGGTGGAGCAGGAGCTGGAGACAGCCCGGAAGGACCTCATCAAGTCGGAGGAGATGAACAACAAGTACCAGAGGGACTTCAAAGAgGCCATGTGTCAGAAAGAGGACATGGAGGAGCGGATCGTAACATTGGAAAAACGCTACCTGAGCGCCCAACGAGAGTCCACCTCGGTGCACGACATCAATGACAAACTGGAGAACGAGTTGGCCAATAAGGAGGCGTTCCTCAGACAGatggAGGAGAAGAACAGGCAGCTACAGGAGAGGCTGGAGCTTGCAGAGCAGAAGCTCCAGCAGACCATGAGGAAGGCGGAGACGCTGCCGGAGGTAGAAGCTGAACTGGCCCAGAGGATAGCAGCCCTCACCAAGGCGGAAGAGCGTCACGGGAGCATTGAGGAGCGAATGAGGCACTTGGAATGCCAGCTGGAGGAGAAGAACCAGGAGCTGCTACGGGCTCGTCAGAGAGAAAAGATGAATGAGGAGCACAACAAGAGACTGTCGGACACGGTGGACAGACTCCTCACAGAGTCCAACGAGCGTCTACAGCTCCACCTGAAGGAGAGAATGGCAGCTCTAGAAGAGAAGAATTTGTTAATCCAAGATTCGGAAGGTTACAGAAAACAGTACGAAGATTCAATCCATGAAAAAACACATCTGGCAGAGGAGATTGAGAAACTGAGATCAGAGCTGGACCAATTCAGATTGAGGGCAGGCTCCCTCACAGAACCCACCCTGTCACgGTCTCATCTGGACACATCAGCTGAGCTCCGATTCTCGTTGGGATCTCTGGCTGAAACCCAGTCGGACCACTACCGCTCAGCCAAAGTCATCCGGCGGCCAAGGAGAGGTCGTATGGGTCTGCGTGAAACCAAGGCTAAGTCACTGGGGGAACACGAATGGCGCTCACAGCAACTCGGGGTTCTGGGAGGCCATCACTTTGAGAGCGACACGGAGATGTCCGACATCGATGATGATGACAGGGAAACGATGTTCAGCTCCATGGACATGCTCTCACCCAGCGGCCACTCCGATGCACAAACTCTGGCCATGATGCTGCAGGAGCAGCTGGACGCAATCAACAAGGAGATTCGGCTGATCCAGGAGGAGAAGGAGTCGACGGAGCTGAGGGCGGAGGAGATTGAAAACCGGGTGGCCAGCGTCAGCCTCGAGGGCCTCAACCTGGCTCGAATGCACCACCACGGAGCCTCCATCACTGCCTCAGCCACCGCCTCCTCCTTGGCCTCCTCCTCCCCGCCCAGCGGACACTCCACCCCCAAACTCGATCCTCGAAGCCCCGCCCGTGATATGGAACGCATGGGGGTCATGACACTGCCCAGTGATCTGAGGAAACACAGGAGAAAGATTGCAGCGGTGGACGAGGACGGCCGCGAGGACAAGGCCACCATCAAGTGCGAGACATCCCCCCCGCCAACGCCGCGCACTGTCCgaatgacacacacactgccagccTCCTCGCACAATGACGCACGAGGGATCGTGTCCTCTCTGGAGGCTGAGGCCAGTGCACTGAGTAGTGTAGCCAGCAGCCAAGACTCCCTCCACAAGCAGCCGAAGAAAAAGGGCATCAAATCCTCTATCGGACGGCTTTTTGGCAAGAAGGAGAAGGGCAGAATGGCACATCTGGCACACAGACATGTCATGGTAGATCCACAAGCGACCATGATGGACCCAGACATGGCAGGCCAGGACATGGGGGTGGGCAAGCTGGGAACTCAGGCTGAGAAGGACCGCAGGTTGAAAAAGAAACACGAGCTATTGGAGGAGGCCAGGAGAAAGGGTTTACCTTTCGCCCAATGGGATGGCCCTACAGTTGTAGCCTGGCTGGAGCTGTGGTTGGGAATGCCGGCCTGGTACGTGGCGGCGTGTCGCGCCAACGTGAAGAGCGGAGCCATCATGTCGGCCCTCTCTGACACCGAGATCCAGAGGGAGATCGGTATCAGTAACCCTCTGCACCGCCTCAAACTTCGCCTGGCCATCCAGGAAATGGTCTCCCTCACCAGCCCCTCTGCACCGCCCACCTCCAGAACCCCTTCAGGCAATGTATGGCTGACCCATGAGGAGATGGAGACCATGGCAGCCCCTTCCAAAACGAAGTCCGATTCAGAAGAGGGCAGCTGGGCACAGACTCTAGCTTATGGCGACATGAACCATGAGTGGATAGGGAACGAGTGGCTGCCCAGTCTAGGACTACCTCAGTACCGCAGCTACTTCATGGAGTGCCTGGTGGACGCGCGCATGCTGGACCACCTAACCAAGAAGGACCTTAGGGTGCATCTCAAAATGGTGGACAGCTTCCACAGAACAAGTTTACAGTATGGAATCATGGGTCTGAAGAAGCTCAACTATGACAGGAAGGAACTGGAGAGACGCAGGGAGCATAGCCAGCATGAAATGAGAGatgtaCTGGTGTGGAGTAATGAGCGAGTCATCCGCTGGGTGCAGAGCATAGGCCTGAGAGACTACGCCAACATCCTGCTAGAGAGCGGTGTGCATGGAGCTCTGGTCGCCTTGGATGACAACTTTGACTATAGCAGTTTGGCGCTACTCCTCCAGATCCCCAACCAAAACACTCAGGCACGTCAGATTCTGGAGCGAGAGTACAATAATATGCTGGCGCTGGGCACCGACAGGAGACTGGATGAGTGTGAAGACAAAGACTTCCGAGGTCCATCGTGGAGGAGGCAGTTCCCGCCCAGAGACGTTCACGGTATAAGTATGATGCCCGGATCAGCGGAGACGCTCCCTGCTGGATTCCGTCTCACCGCCACGTCTGGTCACTCCCGAAGACTGCCCCCTGAGGTTGGACCGTCTGCAGTGCAGCGGCTGGACAGCTCCACGGTGAGAACCTATTCCTgctgagaggaggaagagagggaccTTAAACTGTACGCTTGACAACCTGATGCAAATGCAAGCGGCAAAGAGAACACTGAATTCTGCTCTGGATGCATTGTTTAGCACGAAAAGCCCAGGAAGACAGCTGACCGCTATGTACAAAATTACTTCCTCATTCTCAACTCCCTTTATAACAGCACCCTGCAGGCTGTTTCTAAGGATTTCATCAGCACTCCCACacagcaaaagaaaagaagacagaATACAGTGCAAAGATCAGTGAGAGCAAAGGGTTCAATTCTGTATATGTGCACAGGAAACAAAAACTGATGGTATGACTATTTTCTGCACACAGAATATCTCACCTTTAGCTGCTGAAAGTATTCATCTTTTTTCCACTGCTTTAAGCTATCAACACCACAAACGAATACAGCGCACGATTTGCATAGAGGCACCCAGAAAAAAACACCTTTGCGACTTTATCACTTCCTCCATTTCAGACTCTGCTTTTTAAGATTCTTTGCAAAACATTCACACAGAAGATACTTGGATATTTAGAAAAGCACAGCTCCTAAGGACTGAACTTTACAATCACTGAGTATTTCTGTAAATATGTGATCCATCTTGTTTAGAGAATGCTGAAAAATGAAGGTCAAAAGTTCACATTTCATACTGCTCTAAAGAACTAAATTAGCAGTATATATGGTTAACGATTACTTTGCTGTTTCCAAAGTCACCTTCCAAGCTGCAACCAGTATGGCACAAATTTGACCGATTCCAATTACATTCTTGGCATGTTATAATTTAGGTTTTTCCATATTTTCTTTAGAAACCTTGTCAACTTTACAGTACCCCTATTGAAAACTTCTCATTCTGCTTCCCTTCAGGTACAGTTCTGAATGGAGATTAACTAGCGGAGCTGGTGGACAGGCCAACCGGCCGAGGAACAAACCATTCTGACGACACGCACTGCCAAGAagccctcctctcctctctgaccCCCTTCCCCGACCTACTTCTCCTCCTTATGTGGGCACCAGATGCCGGTGCTAAACTGTCCTGCAGGCTGCCCCGTTGTCAGCATAACGTACTGTGTATTTCTTCTACAGGAGATGTGTGGGTTATCTGTAAATAAAtgccattttttaaatataaatatatatacacacacacatgtataaaaaaaaaaaagatattcagAGTTTGTGCAAAAAACATCCCTGCCACCTCATTTAGTGGACCATAGATTAATATATGCTGCTCTTAAAACTGTCTCCATATTACCCTGTCCTCTCTAGATCATTTTGTAcatatggttttattttttcattgtgcTAATGATGACGATGAACCTGTGCTGCACCATCAAGAGAGAAAGACACTGGATGTGGTGTGAAAACCTGCCCTCTAGTGGTGACAAAAAACACTCTGAGCCCCATTTCTGGCACCAACAAACTTCCTTTCTTATGGACTCGCTGTCCTAAAGGAGCATTTTAAGAGGACATGTCAATGCACTGGAATGACATGACAAGCACTTTGATACAACCGCATCAACTCAACAGACTATTTAGTAGCCAAGGACAAAACAAGAGGCGCCATTGCTCTCCGAAGTTGCACAAAAACCTCTTCTCAGAGAACAAAAAAGCAGAACGTCATTCATAGAAGCTGTCACttgttgtactgtatgttttgtcAGGCGATACATTAACACAAAGGACAACTACACACTCAGCCAAGCTGGCCTTCTCCCCCACCCCTCAGACACtactttaacaaaacaaaaggaaataacTAAAAGACAGACTGCTTTAGCTCATAGTGTGCGTAGAGTGTATGTGACCATGTTGAAGTGAGGTGACATTTAATGACAAACCTGTTGCTTGCTGTGACTTACATGAGTGTAACTGTTAACTCTTTGTTTATGTCAGCGTTTCCAGGGTAACCTATTGTACAGCCCTGTTATCTGTCTTTTACTTATTTCTGATGGACGACTCAAGTCTTAccctttttaatttgtttttacatcTTCAATTTGCACGAACAatgaatcattttattttgtgtccatttttttatttattacttctTGTACTTCGGTCAAAACTAAGTGGTGAGCAAGCAAATTTTcattgtcaataaaaaaaaagaaaactactgTCAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307400 lncRNA downstream 135336 8426737 ~ 8429906 (-) True G226658
TU307399 lncRNA downstream 137636 8426737 ~ 8427606 (-) False G226658
TU307402 lncRNA downstream 137636 8426737 ~ 8427606 (-) False G226658
TU307393 lncRNA downstream 207804 8349117 ~ 8357438 (-) True G226654
TU307394 lncRNA downstream 214068 8349702 ~ 8351174 (-) True G226655
TU307457 lncRNA upstream 123483 8809420 ~ 8814394 (-) True dram1
TU307503 lncRNA upstream 232554 8918491 ~ 8922944 (-) True G226711
TU307592 lncRNA upstream 283452 8969389 ~ 8969898 (-) True G226787
TU307604 lncRNA upstream 343109 9029046 ~ 9029370 (-) True G226797
TU307611 lncRNA upstream 351834 9037771 ~ 9039857 (-) True G226800
XM_039792117.1 mRNA downstream 54928 8475630 ~ 8510314 (-) False lin7a
XM_039792118.1 mRNA downstream 54928 8475630 ~ 8510314 (-) True lin7a
XM_039791438.1 mRNA downstream 162384 8343006 ~ 8402858 (-) True ppp1r12a
XM_039792437.1 mRNA downstream 232221 8260324 ~ 8333021 (-) True pawr
XM_039792436.1 mRNA downstream 340025 8028460 ~ 8225217 (-) False syt1a
XM_039791530.1 mRNA upstream 109957 8795894 ~ 8802059 (-) True si:zfos-932h1.3
XM_039791531.1 mRNA upstream 109957 8795894 ~ 8801122 (-) False si:zfos-932h1.3
XM_039791537.1 mRNA upstream 123456 8809393 ~ 8814440 (-) False dram1
XM_039791535.1 mRNA upstream 123456 8809393 ~ 8814439 (-) False dram1
XM_039792170.1 mRNA upstream 162091 8848028 ~ 8861359 (-) True chpt1
TU307188 other downstream 673931 7888571 ~ 7891311 (-) True G226495
XR_005638120.1 other downstream 1070935 7426600 ~ 7494307 (-) False LOC120553151
XR_005638119.1 other downstream 1070935 7426600 ~ 7494307 (-) True LOC120553151
XR_005638121.1 other downstream 1070939 7426600 ~ 7494303 (-) False LOC120553151
TU306891 other downstream 1476175 7086947 ~ 7089067 (-) False meig1
unassigned_transcript_1484 other upstream 1509847 10195784 ~ 10195870 (-) True trnay-gua_60
unassigned_transcript_1485 other upstream 1510410 10196347 ~ 10196433 (-) True trnay-gua_61
TU308019 other upstream 1827557 10513494 ~ 10522962 (-) True G227082
TU308180 other upstream 2294261 10980198 ~ 10981259 (-) True G227197
XR_005638189.1 other upstream 2938072 11624009 ~ 11676832 (-) False pcloa

Expression Profile