RNA id: XM_039791531.1


Basic Information

Item Value
RNA id XM_039791531.1
length 2885
RNA type mRNA
GC content 0.54
exon number 7
gene id si:zfos-932h1.3
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8795894 ~ 8802059 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCGGCTCGGGGTTCTGTTGATTCTCAATTGATCCAGAGCTATTTGGATAGACTCCCAATAGCCTCTGCAAACACAGATGGACGCAGAGGTGAAAACGACAGAGTCCACTTTCATTGCACTTGTTCAGAGCCTGCTGAAAGATCCAGTTGAGAGAGCATATTTCTACCAGGAGGTGTTCCCAGTGGAATATGGGCCACAATATGATGCTGCTCTGCACGTGTTATTGTGGGAGCTGCTCTCAAAACTGGTAAAGCTGCTTCCAGTACCGGACTTAAAACAGACTGCAGCCTGGCTCGGCTCTGCTCCTTCTATGTGGGAGGAATGTGTTCAGTCCTCACCTGAAGACCTGAGCTTAATCTTCCAACACTACAAAAGTTCAGGACTACTGAAAATGCCATgtggccCTTCATCCACGATCGGTAGCTGCATCATGTCTGCTTTATCCATTCCTCCCTCGCAAAAAACAAACCTCTCTGTCGGACTGGAATCAATCCACAACTATGCTAATGTGCTAAACCCCGTCACTTTAGTTGGAGCGGACCAGTACAGCGTTGTTGCCGTCTACACCGAAGTGGAAGTTGGAGCGTCTGAAGTAGATCAAGAAATGATCGAGTCAGCCGAAGTGCAACTTCAGACTGATTTCTACGAAGAGGAGATAGTTAGCGCCGATACCGCCGGCTGTGAGGAGGCTACCAGCTCGAGGGCAGAAGAACCAAGTGAAACTGTGGATGTGGCTAAAGCTCTGGAGACTCTGACAAAAACGTTTGCACTAAGGAAGGAGAGCCTCGGTCAAGATGTTCCGACAGGAAGGAGCAATGATTCGTCCCGTAATGGTGAGCTTGGAACTGCACCAGGTGAAGGAAAAACACACGACGGACAAGAAACAAGCGACCCAACTGACGAGAAACGAGGAAACGTCGAAGAGGTGAAGGAGGATTTCCAACCTGAAGGCGTAGAGAGCAATACGGACTCTTGGGCAGATTTGAAGGGTGATCGTGAATCCTTTTCTGTCCACGAAGAAATGACCGACGTCCCCAGTGAGGACCCAGTCTCGGAGTCCCAACAGTCTCCCAGTTCGGCTAATGTGCGCCGATCCACTCGTCTACAAATGAAGACCCCACCCAGTTGGCAGGAGACGTGTCAAATCCAGAGGTCATCCAGAGAAAGTAGCGAGGAACCAAAAATGAGCAAAGCCGACGTATCAGTCGCCCCCTCGGTTATAGCCATCAAAGGAATCGAAAAAGgtGATTCGGACGAGATGACCTCCATCATCTTCACCTGCTCACAGTGTCCCTTCCACAACTCGGACCAAAGCAGCCCGCCTCACTTCCACATGCAGAGTGTTCGCACTGACGTGTACAGTACTCTCTCAGGAGCCAAATTTACACCGTCTCCTTCCAGCACTGATGAGATTTTTACGTCCATTAAACTGTTCCCCAAAAGAACCACGGAGGAGAGCAAAGCACGACAGTGCGACAGTCAGAGCGATGCGCCACAGTCGCAAAGCAGACCGAAGGCCCTCGCGTGCCAAACGTGCGGTAAGACGTTCACCCGGTCGTCCGACGTGAGGAGACACCAGCTCACGCACACCGGCGAGAGACCGTTTCGTTGCTCGCGGTGTGACCGGACCTTCCAGCACTCGTGGGATCTGGCCAAGCACGAGAGCAAACATCACGGCGTGGCCATCTCTTTCTCCTGCGAGCTGTGCGGGAGCTCCTTCGCCAACCTCCGCGCGCTGACCGTCCACCATAAGAAGTCCCACTCGGAGGAGAGCCGGCTTCCTCAGATGTGCTCCATCTGCAGCCACAGCTTCCCCACGTCCTCCGAGCTGCACGAGCACAGGAAGTCGCACGTCGCCGCCAAGCGCTACGTCTGCCAGCAGTGCGGCGAGGGCTTCGACTCCCTGCTCGCGCGCTCCCAGCACCGGCAGATGCATCAAGTGAAGAGTCAATTTAAGTGTCCGCATTGCGAGAAGACGTACACTCGGAGGTCGGACGTAAAGCGCCACCTATCCACCCACACTGGCGAGCGACCGTACCAGTGCAACCAGTGCAGCAAACGCTTCTCGCTCCGCTTTATGCTGATGAAACACCTCCGTGTTCACACGGGGGAGCGGCCGTTCCAGTGCTCCCACTGCCCCAAGAGGTTCACCCTGGTGTCTGTGCTGGCCAGACACGAGAGGATGCACACCGGGGAGAAGCCTTTCCTCTGCTCTCAGTGTGGGAAGGGCTTTTTATCGCAGGGAGAGCTTTCGAAACATCACCGGTCCCACGTGGACGACAGGCCCTACTCCTGCCCTCAGTGCGACAAGCGCTTCAAGAGCAAGAAAACCCAGCAGGAACACATCGTCTCGCACAGCGGCGCCCGCCCGTACCCCTGCGCCTACTGCGGGAAGGGCTTCACCAAGCCGTACGCGCTCACCAGACACAATCTCATCCACACGGGAGAGCGGCCGTTCCCCTGCGGACACTGCGAGAAGTCCTTCCTCACGCTCGGCGAGGCTCAGCtgcaccagcgcattcacacgggGGAGAGGCCGTACCCCTGCAACGTCTGCGAGCTCAAGTTCAAGAGCTCGTCGGAGCTGGCGCGACACAAGCGAAGCCATTCGGGGTTGAAGCCGCTGAGGCCCTACTGTGAGCAGTGCATGAAGACGTTCCCATCCAAGGCCACGCTGAAGAAACACATGAAGAAACACTCAGACGAGGGAGGAGCTGCACAGTCTGTGGACTCTGTACAGCCTGAGGAATCAAATCGTTAAACGAATAATGTAGATGACCTCAgtagttaaaggtgccctgccacacgtatttcattactttgtggtatatatatatctgaagttctaccatggactctgtaacatattttttgttgaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307400 lncRNA downstream 365988 8426737 ~ 8429906 (-) True G226658
TU307399 lncRNA downstream 368288 8426737 ~ 8427606 (-) False G226658
TU307402 lncRNA downstream 368288 8426737 ~ 8427606 (-) False G226658
TU307393 lncRNA downstream 438456 8349117 ~ 8357438 (-) True G226654
TU307394 lncRNA downstream 444720 8349702 ~ 8351174 (-) True G226655
TU307457 lncRNA upstream 8298 8809420 ~ 8814394 (-) True dram1
TU307503 lncRNA upstream 117369 8918491 ~ 8922944 (-) True G226711
TU307592 lncRNA upstream 168267 8969389 ~ 8969898 (-) True G226787
TU307604 lncRNA upstream 227924 9029046 ~ 9029370 (-) True G226797
TU307611 lncRNA upstream 236649 9037771 ~ 9039857 (-) True G226800
XM_039791527.1 mRNA downstream 41064 8565242 ~ 8754830 (-) False ppfia2
XM_039791537.1 mRNA upstream 8271 8809393 ~ 8814440 (-) False dram1
XM_039791535.1 mRNA upstream 8271 8809393 ~ 8814439 (-) False dram1
XM_039792170.1 mRNA upstream 46906 8848028 ~ 8861359 (-) True chpt1
XM_039791964.1 mRNA upstream 61260 8862382 ~ 8896543 (-) False mybpc1
XM_039791963.1 mRNA upstream 61260 8862382 ~ 8896543 (-) False mybpc1
XR_005638147.1 other downstream 1984 8565242 ~ 8793910 (-) False ppfia2
XR_005638146.1 other downstream 41062 8572959 ~ 8754832 (-) False ppfia2
XR_005638142.1 other downstream 41064 8565242 ~ 8754830 (-) False ppfia2
XR_005638144.1 other downstream 41065 8565242 ~ 8754829 (-) False ppfia2
XR_005638143.1 other downstream 41065 8565242 ~ 8754829 (-) True ppfia2
unassigned_transcript_1484 other upstream 1394662 10195784 ~ 10195870 (-) True trnay-gua_60
unassigned_transcript_1485 other upstream 1395225 10196347 ~ 10196433 (-) True trnay-gua_61
TU308019 other upstream 1712372 10513494 ~ 10522962 (-) True G227082
TU308180 other upstream 2179076 10980198 ~ 10981259 (-) True G227197
XR_005638189.1 other upstream 2822887 11624009 ~ 11676832 (-) False pcloa

Expression Profile