RNA id: XM_039791532.1


Basic Information

Item Value
RNA id XM_039791532.1
length 1387
RNA type mRNA
GC content 0.45
exon number 7
gene id washc3
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8802548 ~ 8807170 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGACGTCAAGACACGACCACGCAGTCCGGAGTCACGTGAAACGTTTCACTGCAGGTTTATGCACCGCTTTCCTGTCATTTTGCAGTGAAAATACTTTGCATTAGTACTGAAACGGCTCTGTAATCTGCAGGAAGTTTAAAATCCCAACATGGACGAGGACGGGCTGCCGATTGTGGGTTCTGGTGTCGATCTTACCAAGGTCCCTGCTATTCAACAGAGAAGAGTTGTTGCCTATCTCAATCAGTTTGTTGTGCACACGGTCCGGTTCCTTAACCGTTTCTCCACAGTTTGTGAAGAGAAACTTGCAAACATATCTCTTCGCATACAGCAGATTGAAACGACCCTGTGCATTCTGGAAGCCAAGCTGTCCTCCATTCCTGGGCTGGAGGACGTCACAATAGATGGACTCAGTCAGCGGCAACCTGCTCAGGCCAATGGACCCACTACTGCCAGTCAGAACCAAACAGATGGTCCACCAGCAGGGAGCCTGCCTCCCCCACAGCCCGCTCAGACTACACCAGAGGCTGCAATGCCACCAAAAGCAGAAGCAGCTGCAGAGAATGTCATGACAGTGGCCAAGGACCCACGTTATGCCCGATACCTGAAAATGGTTCAAGTGGGAGTTCCAGTTATGGCTATAAAGAATAAAATGGTCCTGGAGGGTTTGGATCCTAACTTGCTTGACACACCAGACGCCCCCGTGCCTGATAGAGGAGCGAGGAGCGCTGAGGATCAAGACGCTGATGTCACCAGCTCTGACAGCGAATCATCTTTCAGTGACTGACATCCGTCCCCATCACCCACAGAGGTTCCTGTAAAGGCCGTCCATCGCTACTCTGAGCTTCTGTAGGCCTGTTACTGAGAAGGCGATGTAGGTTGCAGTGTGTGCCTGTAAGTGAGTGCCAGCGAGAAGGTGCAAATGTAAGTGCCTGAAACAGGAAACTCCAAGCAGAGTGATTGTAATTTCAGTGGTAAAAGCGTTGAAATAGTTTTGCTTACAATCGGTCAGTGACCTCCTCTGTTTTGATACATTTAGCATTTTTGACTAATTCAAAAAGAGGGAATAATTATCCCTGTTGATTATGTTAGTCATCAGAACATGGCAgtagcaagtttttttttttgttttcttttttttacaaaaaagtgtAGAACTTATTGCTCTTCTCTTTGGTTATCACACTACTATCTCAGTCTAATGCCTTTTAAGAGATGCACTCGTCAGTTGAAAGTTATTCAAAAATGTATGTGGGATACTTTGACTGtttaacatatacagtacattgtaaTTCTGTGTGTTAAGACCAGGGAGAAAAATATCACAACAGTCTTTCAGTGACGATCTATTGTATATCATAATACCAGTTAAATAGGAAGGAAAATCA

Function

GO:

id name namespace
GO:0071203 WASH complex cellular_component

KEGG:

id description
K18463 CCDC53; WASH complex subunit CCDC53

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638149.1 lncRNA upstream 182053 8617814 ~ 8620495 (+) True LOC120553277
XR_005638150.1 lncRNA upstream 182053 8617823 ~ 8620495 (+) False LOC120553277
TU307276 lncRNA upstream 393889 8341630 ~ 8408659 (+) False G226554
TU307280 lncRNA upstream 443266 8356330 ~ 8359282 (+) True G226556
TU307275 lncRNA upstream 458745 8341630 ~ 8343803 (+) True G226554
TU307369 lncRNA downstream 62848 8870018 ~ 8870711 (+) True G226638
TU307374 lncRNA downstream 74647 8881817 ~ 8883677 (+) True G226641
TU307514 lncRNA downstream 127880 8935050 ~ 8935551 (+) True G226720
XR_005638190.1 lncRNA downstream 134671 8941841 ~ 8943537 (+) True LOC120553611
TU307510 lncRNA downstream 204972 9012142 ~ 9012662 (+) True G226716
XM_039791529.1 mRNA upstream 237193 8515588 ~ 8565355 (+) True acss3
XM_039791202.1 mRNA upstream 331514 8468661 ~ 8471034 (+) True myf5
XM_039791157.1 mRNA upstream 338454 8462324 ~ 8464094 (+) True myf6
XM_039792276.1 mRNA upstream 372832 8426635 ~ 8429716 (+) False rps16
XM_039791586.1 mRNA upstream 789737 7978078 ~ 8012811 (+) False ppfibp1a
XM_039791533.1 mRNA downstream 11400 8818570 ~ 8845025 (+) True gnptab
XM_039791534.1 mRNA downstream 11400 8818570 ~ 8845025 (+) False gnptab
XM_039791812.1 mRNA downstream 111064 8918234 ~ 8926796 (+) True atp6v1e1b
XM_039792424.1 mRNA downstream 119902 8927072 ~ 8932977 (+) True LOC120553730
XM_039792293.1 mRNA downstream 199388 9006558 ~ 9010187 (+) True LOC120553653
TU307294 other upstream 369851 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 1402149 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 1470289 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 1481499 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 1655208 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638164.1 other downstream 327424 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 430094 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 1385156 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 1387260 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1483 other downstream 1387950 10195120 ~ 10195206 (+) True trnay-gua_59

Expression Profile