RNA id: XM_039791533.1


Basic Information

Item Value
RNA id XM_039791533.1
length 4483
RNA type mRNA
GC content 0.53
exon number 21
gene id gnptab
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8818570 ~ 8845025 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAGCAGCATGGCTGAAGAACAGCAGCGTCACCACCACAGAAGAAGCGTGCAATGTGTGATCGTTATGTGTCATGCAGTCTGGCTGGTGGTCAGCTGACAGATCTGAGTCTCCTGTGATGTTTACTTTCTTTGTTTAGTGCGTTAAACCtgcgttgttgttttttttttttgaatgaatgaaGCGGTATGCTTCGATAAGGAGAACCATGGTAGTCGTCAACTCGGTGCTCAAGCTGTTGCAGAGGCAGACGTACACCTGTCTGTCCCATCGCTACGGGCTGTACCTCTGCTTTGGGGGGATCGTCCTCATGATAGTTTCTGCCTTTCAGTTCGGAGAGGTGGTGGTTGAGTGGAGTCGGGACCAGTATCATGTGCTGTTTGACTCCTACAGAGACAATGTAGGTGGGAAATCATTCCAAAGCAGACTCTGTCTCCCCATGCCTATTGATGTAGTGTACACATGGGTGAACGGCACAGACATGGCTCTGCTGAAGGAACTGAAGACGGTCAAAGAGCAACTGGAGGAGGAACACAGGGCTCTGAGGGAACGCCTGGGGAAAAATGCAAGTGAGACAACTGAATTGCCAAAAGAGAGtgttAAGCCAGAATGCCTGCTGTCCCACTGCATCATAGCGCCCATGCTGGCCCTGGACCCGGCTCTGCCAGCCAACATCACGCTCAAAGAGCTACCGTCACTCTCGGCGTCCTTCTCGGCTGCCAAAGAGCTGCTGCTGATGAACAAACCCTTCCACCCGTCCACCACCGTCTCTGTCGTTGTCTTCCATTCGCAGGCTGAAGctgaTAAAGCCTATACAGATGTGTTAAGGGAAGACCAGAAAGTCTCTGTGTCCAGATGTTACCTGaCGACAGATAAAGAGGCTCCGGGTCTGATCCGCATGCAGTCTCTGGCCTACCTCAGCGGCTTCCCGGCTTCCTTTAAAGAAACGGAGCAGCTGAGAGTCAAACTGCCCTCTGTCATAACCAATAAGATCAAACAGTTTGAGTTATACTCTGAGGCCAGCATCGTCCTGCTCCACCTGAAAAGCCCGCAGGATTTCACTGATCTGACCCAGCAGGCTAAAAAGAACCTGACCCTGGATGGAAAAGAGTTAACCATCAGCCCTGGCTATTTGTTCTGGGACCTCACTGCCATCTCACAGTCCAAACAGGATGAAGATGTTTCCGCCAGCAGATTTGAGGACAACGAGGAGCTCCGCTATTCGCTGCGCTCTGTGGAGAGACACGCCCCCTGGGTGCGACACATCTTCATAGTTACTAACGGGCAGATTCCCTCCTGGCTTAACCTGGATAACCCCAGAGTTACAGTTGTCACACATCAGGATATCTTCCTGAACGACAGCCACCTTCCCACTTTCAGCTCCCCTGCCATAGAGACCCACATGCACCGCATCCCAGGGCTCTCCCAAAAGTTCATTTACCTcaatgatgatgtgatgtttggcagagaTGTCTGGCCAGATGACTTCTACAGCCACTCAAAAGGACAGAAGGTGTATCTCACCTGGCCTGTCCCCAACTGTGCTGAGGGCTGCCCAGGATCTTGGATCAAAGATGGGTACTGTGACAAAGCCTGCAACAACTCTGCCTGTGACTGGGATGGAGGGGACTGCCTCGGTGCAGCGGGGAGCAGTCGGTTTGTGGCTGGGGTCGGTGGTGGCGGACCGGGAGCTGCTGCGCAGATGTGGCAGTTTGCAGGTGGCCTCGGAGGTCTAGGGGGGACGTCGTACTGTAATCAAGGCTGTGCCAACTCCTGGCTGGCAGACAAGTTCTGTGACCAGGCCTGCAATGTTCTCTCTTGTGGTTTTGATGTGGGAGACTGTGGCCAAGAGCACTTTGGCGAGCTGCACCACGTGACCCTGCTGAGGGATCAGAGTCTGTACACCCTCCCAGTAGGTGAAACCAGGCCATATTTCAGCTTCGACGGACTGGCTCACAGAGTCTCCGAGGCCCACGTCAGCGACAACCCGGCGCTTCGCCACACCTCCGTCGCCAACAAGTGGAAGACCGTTCACCTGCTGCTCCATCCGGGCCACAACGCCACCCAGATCCAGTACAATCTCACTTTCCAGAGAGAAGACCAAACCGAGTTCATAATGAGCTTCAGCGTAGCGGTCGACACCCGCGAGGTGCCCCAGGCCAATGTGTCCCAGTCTGCTAGCAAAGACGCCGGCAAAGTGCCGAAGCCGACGCCGACACCGGAGCCGCTGGTCCCATTCTCGGACGTTCCTGAGGACAAACGGGGCCCTAAGATCCAGAAGAGGCCGCCTGGTGAACCTCAGGTTGTCATAGAAGTGCCTTCGCTTAATGTGTCCCTTCTACCAGCCGCTGTGCAAAGTGAGCTGCAAAGGCTGGAGGAGAAGCTTCTGATCGGTGACATCACCATGAAGGGCTATAACCTCACAAAGGCTGAGCTTCTAAAACCTTACGCGACACTGGCTCAAAAGCAGCAGGTTGTCAGTTCAAATCCGGCTAATGAGGGGGCAGCCAAGGGCCAGGGAAAGCCCTACAAAGACTTGGAGGGAGAGCAGTTGGAAGGGAAAGCACCCGTGGAAGAGAAAGCTGGAAATATCGTTCAGGAAAATCCAAACTCAAAAGAAGAAATGTCCATGTCCAAATGGAAAGACGCGGCTGTGCAGGAAAAACCTGTCACTCCTCTAATCGCAGTCCACATTGATGATAAGCACGAGAAAGACTTTGTAACTCCCAAACATTATAATTTGAATGCTGCGATCGAGAGGCCTATGACTTCCAAACTGCTAAGCAGCATTTCAAAAACCAAGAGCGCCAAGAGTCAGGCAGAGCCAGCAGACGCCGCAGGACCAgctccagtcgggaggagactGCAACACTTCATCTCCGCAGACAGAGGCTTCCTGCCGTGGGAGAGGAGGAAATACTTCCAGGAAGTGCTTGAGGAAGAAGAACGTCTGCAGAGAGAGTTGTCGTATGAGACTGACGGTGGCGCCACTGGCCGAAGGCTGCAGGACACTTTTGCTGACTCGCTGCGCTACGTCAACAAGCTGCTCAACGGCGAGTTTGGATTCACGTCGCGCAAAGTACCTGCACACATGCCTCACATGATCGACCGTCTCATCATGCAGGAGCTGCAGGACACATTCCCAGAGGAGTTTGACAAGACATCAGGCCATCGTGTTCGTCACCCAGAGGACATGCAGTTTGCCTTTTCGTACTTCTACTTTCTGATGAGTGCTCAGCAGCAGCTCAACGTGTCCGAGGTGTTTGACCAGATCGACACAGACCACTCAGGCGTCCTGTCCGACCGGGAGATTCGAACTCTCGCTACAAGAATCCACGAGCTGCCCCTCAGCCTCCAGGACCTGACAGGCCTGGAGCAGATGTTTATAAACTGCTCTAAGACTCTCCCGACTAATCTGACCCAGCTCCACCTGGTGAACCCAACTCAGGAGGCCTACTACGACCCCAGCATGCCTCCTGTCACAAAAGGCCTTGTCCTCCACTGCAAGCCCATTACAGAACGCATCCAGAAAGCCTTCAGAGACCAGAATAAGTATAAGTTTGAGATCATGGGAGAGGAGGAGATAGCTTTCAAGATGGTGCGGACAAATGTGTCCCATGTGGTCGGCCAGTTAGATGACATTAGGAAGAATCCCAGGAAGTTCATCTGTCTGAATGATAACATCGACCACAGCCATAAGGACGCTGCCACAGTGAAAGCTGTGCTGAGAGATTTTTATGAATCCATGTTCCCGCTGCCGTCCCAGTTTGAACTGCCAAGAGAGTATCGCAACAGATTCCTGCATATGGACGAGCTCCAGGAGTGgAGAGTGTATCGGGACAAGCTGAAGTTCTGGACGCACTGTGTCCTCGTGACACTCGTCGTCTTCACCATCCTGTCCTTCTTTGCCGAACAGCTGATTCTGCTAAAGCGAAAGCTGTTCCCGAGACGCAGGGTGAACACGGACAGCAACCCTGAGCGGGTGTGAAAGAAAGCTGgtcttccctctcctctctgcactTCAGCACCCTCCACCCTTTCTCTCCTGCTCAGTAGAGAGGATTCAGACCGGGGGACTGGGTGGAAACGGGAATCTGAAGTCCTCTGTGCTTGTGTTGCATCAGCACAGACACAGGATAGAGACTCATGTGAGATGGTGATGAAACATTTTTCATAAGATGATGGATGGGGCTGGCCGGTGAAAGGAATGGCAGCCAGGAAGAAGAAGCCTGTAATTCTTCGATTCCTCGACTGGGGGCATCTGGGACTTTTGTACAACACACACTCCTGCacgtacacaaacaaacactccCTCCATACTGCACCACCCTCACCATGTCATTGATTGATGTGCTGTTAAAGTGTAAAGCATTTGGCAGCAGCACGCCCGgacagattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K08239 GNPTAB; UDP-N-acetylglucosamine-lysosomal-enzyme

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638149.1 lncRNA upstream 198075 8617814 ~ 8620495 (+) True LOC120553277
XR_005638150.1 lncRNA upstream 198075 8617823 ~ 8620495 (+) False LOC120553277
TU307276 lncRNA upstream 409911 8341630 ~ 8408659 (+) False G226554
TU307280 lncRNA upstream 459288 8356330 ~ 8359282 (+) True G226556
TU307275 lncRNA upstream 474767 8341630 ~ 8343803 (+) True G226554
TU307369 lncRNA downstream 24993 8870018 ~ 8870711 (+) True G226638
TU307374 lncRNA downstream 36792 8881817 ~ 8883677 (+) True G226641
TU307514 lncRNA downstream 90025 8935050 ~ 8935551 (+) True G226720
XR_005638190.1 lncRNA downstream 96816 8941841 ~ 8943537 (+) True LOC120553611
TU307510 lncRNA downstream 167117 9012142 ~ 9012662 (+) True G226716
XM_039791532.1 mRNA upstream 11400 8802548 ~ 8807170 (+) True washc3
XM_039791529.1 mRNA upstream 253215 8515588 ~ 8565355 (+) True acss3
XM_039791202.1 mRNA upstream 347536 8468661 ~ 8471034 (+) True myf5
XM_039791157.1 mRNA upstream 354476 8462324 ~ 8464094 (+) True myf6
XM_039792276.1 mRNA upstream 388854 8426635 ~ 8429716 (+) False rps16
XM_039791812.1 mRNA downstream 73209 8918234 ~ 8926796 (+) True atp6v1e1b
XM_039792424.1 mRNA downstream 82047 8927072 ~ 8932977 (+) True LOC120553730
XM_039792293.1 mRNA downstream 161533 9006558 ~ 9010187 (+) True LOC120553653
XM_039792055.1 mRNA downstream 172061 9017086 ~ 9020129 (+) True fgf23
XM_039791611.1 mRNA downstream 242148 9087173 ~ 9089548 (+) True llph
TU307294 other upstream 385873 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 1418171 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 1486311 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 1497521 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 1671230 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638164.1 other downstream 289569 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 392239 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 1347301 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 1349405 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1483 other downstream 1350095 10195120 ~ 10195206 (+) True trnay-gua_59

Expression Profile