RNA id: XM_039791541.1


Basic Information

Item Value
RNA id XM_039791541.1
length 2025
RNA type mRNA
GC content 0.48
exon number 11
gene id pphln1
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15472275 ~ 15491287 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagctaacgttacagtaTTTAATATTGTGTTGAAGATCACATCTCATTATCGTATCACCCCGATTCACAGAGGTCCTTGAGTCCAAAATGACGTACAGGAGAGACAGGAGTATACGAGAGGTGTATGATGAACGCTTTTTAACAGAGAGACCGGGTCCATACCCACGGGCAGCTGGGGCAGCGGAGAGGAGGGGCCCCTTTAGCAGACCAGAGGACGACTATGGCCGCGGCGGGTACGAATATGAAGGAGGTCCACGCTTCTTCCCGAATGGAGGAGGCCCACGAAATTATCATGAAGATCAGAGGGGCTACCATGGTGACAACCTTCATTTCCCTGCTGAACGCAGAGCTGTTCCACCTTCAAGAAGGGAGGACTATCCTTACAGAGTACCCAGGGAAGACCAACAACACACAGGACGGCCTTTGGAGTTTGGCGCCCGTgcagcaccaccaccaccacctcataATGTGCGAAACCAGGGCATCTACCCAGCGCCCAGAGCTCTCCCAGAGAGCGGGGAGGACACACTCGTGCAAGCCATCCTCAACCTGGACAGAGGGGAGGACCGAGACCTCTACAGGAGAAAGGCAGCCCCGTTCCCTCCACTCAGAGAGCGTTCTCCTGTGCGCCGCGAGGTGGCCCGCTCCCCCCACAGTCGCTCCGGCTCCAGCGTCAGCAGCAGAGGCTACTCACCAGACAGAGCCAAGAGCCTGCCATTTCCCTCACAGCAAGGCAAGAGTGTGGACGGTCCAGAGGGTCACGCAGGTGTTTCTGAGCACCTTTGGGGGGCGCACTATCCTCAACAGAGTGGACATGAAACTTTCGACAAAATTCCTGGCCTGTCAAGAGAAGGCTCCCCACACAGCGCAACCTCAAACAAGGAGGAGAACCATCCTCCAGAAGTAGGAAAAGAGGACCCACTTGTGGCTCCAGTCGTGGAGGAAATCCAAAAGTCGACTATAGACAACTTTCAAGAGCGACGAGCCCTGGCCATCGCATCCAAAGCTCAGGAAATAGAGAAGGTGTACCGTCAGGACTGTGAGACATTTGGCATGGTGGTAAAGATGCTGGTGGCTAAAGACCCCAACCTGGAGAAGCAGCTGCAGGTTCCCCTAAGAGAGAATCTCGGGGAGATCCGCGAACGTTGCCTGGAGGACCTCAAACACTTCATCAACGAGCTGGACGAGGTGGTCCGGCAGCCAGAACCTTCCGTCTGTGACTCGACCACCCCATTGGCGTCCCTGACGGCTCATAAACTCTCAAAGACAGGAGTCAATCACAGCACGTCTTACTGACACGTTGGCCATCTGCTCTATGTGAGACTGAGCATGGAAGGATTGACTGCTGAACATGATGGATATCtcagaatacattttggatTGCTGGGCTTGAACCGATTCTTCAGCACAGCAACCTGAAGAACAACTCTACATGGAGAGGATGCAGTGTTGCATTATATGTGGGGATAAGCAGTGTTAGATTTTGAACAGACAGTTTTTTACCTTCAAATTGtctgttaaaaatatgttaattataaataaataaaagttgtttttctGTCAAATGATGGCAAAAAAACCCATTTTGTCTATTTAACGTCTCACATCACTGTGGAAATGGTTAACATGGGTTTTGTTATTTAACCTAGTTTGATGAAAATATGTTGTTGAGAATAGACAGTGAGTCCTGCAGCATGATCACACTTTTCTTAAAGAAAAGTCCGAtaagacaatgttttttttttttttttagttctgcACATTTTGAAGCAGTCAGATGTAAGACTTGGTGCTGCTAAATTTACAGTTCTACATCCTTGTATAAATGTTTATTGTGCAGACATGCCAGTTTGGTTACCTTTTTCATTGTGTTTGTCTCATTTTGCCTTTTACAAACTTTATATTCTATCGCCCTCCCAGGAAAAAGCTGCACAAGGCTTGATTACTTTGATGGCATTGAGACAAAGCTTTGCACAAACTAAAGTGTCTCTGAAGTTGTAGTAAAGTGATTTCTAATAACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309426 lncRNA downstream 126631 15320833 ~ 15345644 (-) True G228075
TU309428 lncRNA downstream 141119 15325485 ~ 15331156 (-) True G228077
TU309417 lncRNA downstream 181052 15290874 ~ 15291223 (-) True G228067
TU309416 lncRNA downstream 181782 15290239 ~ 15290493 (-) True G228066
TU309413 lncRNA downstream 190606 15281466 ~ 15281669 (-) True G228063
TU309475 lncRNA upstream 1378 15492354 ~ 15493417 (-) True G228109
TU309482 lncRNA upstream 3728 15494704 ~ 15510782 (-) False G228111
TU309481 lncRNA upstream 4019 15494995 ~ 15510782 (-) False G228111
TU309483 lncRNA upstream 8860 15499836 ~ 15510782 (-) True G228111
TU309501 lncRNA upstream 40155 15531131 ~ 15531439 (-) True G228120
XM_039792280.1 mRNA downstream 115938 15346999 ~ 15356337 (-) False LOC120553643
XM_039792279.1 mRNA downstream 115938 15346999 ~ 15356337 (-) True LOC120553643
XM_039792209.1 mRNA downstream 134178 15331450 ~ 15338097 (-) True LOC120553603
XM_039791479.1 mRNA downstream 214286 15204448 ~ 15257989 (-) False ccdc146
XM_039791123.1 mRNA upstream 63249 15554225 ~ 15591288 (-) True pdzrn4
XM_039791365.1 mRNA upstream 184651 15675627 ~ 15689322 (-) True cntn1b
XM_039791366.1 mRNA upstream 199129 15690105 ~ 15746414 (-) True nrcama
XM_039791836.1 mRNA upstream 260088 15751064 ~ 15760526 (-) False pnpla8
XM_039791835.1 mRNA upstream 260088 15751064 ~ 15760494 (-) False pnpla8
TU309380 other downstream 383946 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 410846 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 1662596 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1813003 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 1942497 13520265 ~ 13529778 (-) False LOC120553470
TU309610 other upstream 280262 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1257866 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 1804146 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 2339696 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 2339696 17830672 ~ 18100995 (-) False tafa5a

Expression Profile