RNA id: XM_039791549.1


Basic Information

Item Value
RNA id XM_039791549.1
length 5239
RNA type mRNA
GC content 0.47
exon number 22
gene id strip2
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16882811 ~ 16912629 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCGCAGATGCTCCTCTCTGCTGTTGACTCTCTAACCCCGCCCGCTCGGGGCGCATAGCGATATCGAACCAaacagacaggaggaggaggaggagatccTCAACTTGGGCTGAGGAGCCGGTGCTGCTCCCGGTGCGGTGCAGTCACACACAGCTCTCCACCGGACCGATATGCACTACCCGCGGAGGAGGAAGTAAGCTGCAACGACCGAGAAAGATGCAGGCGGAGGACATGGAGAGCTCCATGGAGTCACCCAACCTGGAGTTTGAGTacggagacacagacacactgactgCTGAGCTTTCAGAGCTCTACAGTTACACAGAGGAGCCAGAGTTTGCCCTGAACAGAGACTACTTCGAGGAGGACTTCAGGAGCCATGCTCGAGGCAGGAGGTGGATCGAGCTGACGCTGGAGGAGCAGAGGACATATGTGATGAGGCTGCTGGATGCGCTGGAGGTGACGGACAGAGACAAGAGGCTGAAGGTGGCCAGGGCCATCCTCTACTTGGCTCAGGGAGTGTTTGATGAGTGTGACACAGAGGTGGATGTTCTCCACTGGTCCAGACACAATGTCTTTCTGCTCTACGACATGGGCATTTTCACGGCACTGCTGGAGCTGCTTAGCATGGAGATAGATAACAACCAGGCATGCAGCAGTGCAGTGAGAAAGCCTGCCATCTCTCTTGCAGACAGCACGGAGCTCAGAGTGCTGTTGACCATCATGTACCTGCTGGTGGAGACCATTAGAGTTCAAACGGAGGATGACAGACCTGAATGGAGAGCAGAAAGAGAAGCCTTCAAGAATGagctagGTTCACCTCTGTACAACGGAGAGCCCTTTGCCCTGCTCCTCTTCACCATGGTGACCAAATTCTGCAGCATGAATGCCCCACACTTCCCCATGAAGAAAGTACTCCTGCTGCTCTGGAAGACAATACTTTTCACATTGGGGGGTTTCGAGGAGCTCCAGGAGATGAAGGTGCGGGGTCGGGAGCGTTTGAACCTGCCCCCACTGCCGGAGGACAGCATCAAGGTGGTCAGGGCCATGAGAGCAGCTTCGCCCCCGGCCTCTGCCATGGAGCTCAttgaacaacagcagcagcagaagagaGGCCGCCGCAGCCGCAGGAGTGCCTTTGTTGATAGCTTGGAAGGAGACAGTCCCTTTCCCAAGAAGCAGcccctGGTCAAGCAGGACAGCCTGGACACGTACAACGAGCGGGACCCCTTTAAGAACGACGACGCCCGGGACGAGGAGGAGGACCCCGAGGACACAGACAGCGGCATTGAGGGCGAGGTGGACCCCTTGGACCGCGATGTCATCATCCAGCCCCCGCCTCCGCCGCCTCCCCTCAGACCCCCCACAGAAAGGGTCAACTTCCCCAAGGGCCTTCCCTGGGCCCCTAAAGTCAGggAGAAAGACATCGAGCACTTCCTTGAGACCAGTAGAAACAAGTTCATCGGTTTTACTCTGGGAAAtgACACAGATACCCTGGTGGGCTTGCCCAGACCCATCCATGAGAGCGTCAAGACTCTTAAACAGCACAAATACGTTTCCATCGCTGAAGTCCAGATCAAAAAGGAGGACGATCTCCAGCAGTGTCCGATGACTCTGGGCgaggaggtggtggaggagaCACCAACAGAGATGCTGTACCTGGGCATGCTTCCTAACCTCTCCCAGTACGTGATTGCCCTCCTGaagctgctgctggctgcagctCCAACCTCCAAAGCCAAAACTGACTCCATTAACATCTTGGCTGATGTTCTGCCTGAGGAGATGCCTATCACAGTCCTTCAGAGCATGAAGCTGGGAATTGACGTGAACCGCCACAAGGAAATCATCGTCAAGGCCATCtctgcgctgctgctgctgctgctcaaaCACTTCAAACTCAACCATATTTATCAGTTTGAGATTGTCTCCCAGCACCTGGTTTTTGCTAACTGTATCCCACTCATCCTCAAGTTCTTCAATCAGAACATCATGTCCTATATCAGTGCCAAAAACAGtatCTTTGTGCTGGACTTTCCTCACTGTGTGGTCCATGAGATGCCTGAGCTCACAGCTGACAGCCTGGAAGCAGGAGACAGCAACCAGTTTTGTTGGAGAAACCTGTTTTCTTGTATTAATCTGCTGAGAATATTAAACAAGTTGACCAAATGGAAACACTCCAGGACAATGATGCTGGTGGTGTTCAAGTCTGCCCCCATCCTGAAGAGAGCTCTGAAGGTGAAGCAGGCCATGATGCAGCTCTACGTGCTCAAGCTGCTTAAGATCCAGACCAAGTACCTGGGCCGCCAGTGGAGGAAGAGCAACATGAAGACCATGTCAGCCATCTACCAGAAGGTCCGCCACAGGCTCAATGACGACTGGGCCTACGGAAATGATATCGACGCACGCCCCTGGGACTTCCAGGCGGAGGAGTGCGCCCTGCGGGAGAGCATCGAGAAGTTCAACAGCCGCCGCTACGACAAGAACAAGAACGGAGACTTTGCGCCGGTGGACAACTGCCTGCAGAGCGTGCTGGGTCAGCGCGTGGAGCTGCCCGAGGACTTCCACTACAGCTACGAGATGTGGCTGGAGAGAGAGGTCTTCTCCCAGCCCATCCAGTGGGAGGGGCTGCTGCAGAATCCGTgatggaggggagggagaaggtTGGAGAGAGCGAGGAGAGGAGGTGGAAGGAATGGGGGTTATATTTCACATCAGTGAGGGAGGGATGGGGGAGAGTGAAGAGAAAGAAGCTGGAGATGGAGAAGCCACCTCCCAGGCTATCTAGTGATGGAAGAAGATGGAAGATGAAGGGTAAAATGAAGCAAATTTGACGAACAAATGGAGCTTCTTGCTATGAGCTCGTCACAAAtagatgtcacacacacacacgcacacttgaCGTTAACATGTGCCTATGACTACTGTGAACCCACATGGACGTGACAGGCAAGAACAGAGGTAGCAGTTAATAAGAAACCGCTGTAGCAGGAGACTGTTTCGGCCAGTTATActgcccccccccaaaaaaatatctTCACCACATTGTCAATTTATATGTccccttttttaaatgttggtgCTTTTTTGACTCCTTAGTAATGTTTTCCTATTTATTTGTACCAATGTATGTGGTTAAACATTttctgatatatattttttttcaattgagATGTACATGATTTCTaatcagttcttttttttttttttacacaaagccTACTGTAGTCATCGGGTTGTAGTTTGTGGGTGATGGATTGATGAAAGTTTTTCTTATGTATTTTCTAggaaaaaaggcctttttggaAGCAAACCACAGGGTAATTTTGATAGTCCAAATGTAGAAGTGGGACCTATTTCTACTAATGGCATAATGATCTAGTATAATGtcaccaaaaaaaagaaatataccaGCTGtaagtgtatgttttttttgtttgtgaacgTAAAAAGTATGTGTGcgcagaaaggaaaaaaacagcaCATGAAAATGGGCAGATGTGTGGAGGATGGTTTGGTGTAAGAAACAAACCGGATCTTCTGGAAGAAACTGTATCCTATTTGTTCTCTTTAAAAATAGAAACGTAACCTTGTACAGAGTCCTTTCTATTCCTGGTGTGTAAAACATTGGCATCCTTTGAATTTGAAATCCAGAAATCACAGAACCAAATCTGTAATTACTGATGTCATCCAGGATTTGTTCATGTTATCACATATCGAACCTAAAGCCTGTAATGGCCCCATAGAAAAGCTCAGGGAGGGGGCTGTGTGCAGCTCTTTAACAGAGGTGGGTTGGTTAACCAGCTGTAaatttgaccaaaaaaaaatctctgtctTCTCCCGTGAATAATTTTCTCTTTCAAAATCTAAAATACTGTTTATAAAAACTTCCCAATAAAGCACAAATCTCACCTATGTAGTTTCCGAGTGTGGAATGGGCTCATTGTTGCCCCATGTGGCCATTCGGAGAAACAGCCACTTCCCAGAAGTTTTCTATGGAACCGTCCTGGGATAATGGAACCTCAGCAATGATCAGAATAACTAACAATTGTGACTCCCCAACAGCACACATGTAAACCACTGTCCTCCTTGGTGTTGGCCTTGGTGAGCACTTTGCCACCCTTGCTTGGAAGAACACAGCTGTCACACAATGGTGCTGTTTTTCTTATTCGTCTTCACTGTACCTGATCCGTTCCTTCACTTCCGTTACTAACTACCTAAGCGGGGCTCCAGAGTTGAGAGCTCAGGATTGTTTCCTGGAAATGAAGCACAAGaacaagcacagaaaacaaaaagaagcATGTTCACCTTTCTTTCGTATCATTCTCGCTGGGGTTTTGTTATCTACATGCCTCGAGGGGTCAAGCTCAGTCATTTATTATTTCTGTATAGAACAATAATTTTGACACTGAGTCTTGTGCTTCTCTGTTGAAATGTGCATGGCCACTGTTTTGTTTTGAGTACCTGTTCACATTTAAATATGGTATTTggaatggctttttttttttgtctacttATGTTTCCAGCGCAATTAGAAGTGTACTTTTCCTCTCAATGTCTGTGTTCTGCATTACAGtggatgttttttcttcttcaggaAGGCGAAATCTTTCAAAAATAGTATTGTAAACTTTATAGATTCTCAGGTTTATGGAGATAATATATTGCAAAAGTTTTAAAGCTTCCTTGCCATCATCTAGCTCACTACCTGTAGTGATGAATACACATTTATCATCACGTTCATATAAGAAAATAACACCTAAAGCACTTTGACTGCATAGGCTGCACATTTTCACCAAACACAATAATTAATTGTGAGTTTGTATTTATGTCAGTGACATTTCAAGTTcagatgtattttttgtattttgtgccAAATTTGAGTGCCATTATTTCATTGTTGTTGCCTTCATGATCAAAATGTATGGTTTTTCATTGAAATCACCACTCAAGGTTTGCAAtacaaaaatgttattttctaCCTGAAAAATGTACAATCAATGAAAATAGCTGTTTCATGTATCTGGTACAGTATTTTACCAGAAGTGTTTAGCATTGTATGGGTGTTCTAACGGTATATATGTTTGTTACACACATTTCCATATCTGTATAGTCTAGATAAATCCTCATTACTGAATTTGTTCAGAGGTATGTGCAATTACAGATCCATAAAGGCATTATTCAATAGAATTACAAAGTACAATATCAGAGTTGCTTATTAAACAATGTCGAACAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309755 lncRNA downstream 51572 16824829 ~ 16831239 (-) True G228295
TU309741 lncRNA downstream 135771 16746743 ~ 16747040 (-) True G228290
TU309734 lncRNA downstream 346518 16536018 ~ 16536293 (-) True G228283
TU309647 lncRNA downstream 658662 16216115 ~ 16224149 (-) True G228221
TU309501 lncRNA downstream 1351372 15531131 ~ 15531439 (-) True G228120
TU309834 lncRNA upstream 1980 16914607 ~ 16949806 (-) True G228360
TU309840 lncRNA upstream 40316 16952943 ~ 17007000 (-) False G228363
TU309837 lncRNA upstream 91375 17004002 ~ 17007000 (-) True G228363
TU309844 lncRNA upstream 95122 17007749 ~ 17008981 (-) False slc37a3
TU309843 lncRNA upstream 95318 17007945 ~ 17009590 (-) False slc37a3
XM_039792197.1 mRNA downstream 2633 16869736 ~ 16880178 (-) True dhx57
XM_039791736.1 mRNA downstream 14138 16867831 ~ 16868673 (-) True LOC120553391
XM_039791733.1 mRNA downstream 16617 16854992 ~ 16866194 (-) False LOC120553389
XM_039791553.1 mRNA upstream 4678 16917305 ~ 16964944 (-) True ahcyl2b
XM_039791554.1 mRNA upstream 52944 16965571 ~ 16972447 (-) True tmem209
XM_039791552.1 mRNA upstream 59905 16972532 ~ 16979035 (-) True prdm4
XM_039791555.1 mRNA upstream 71276 16983903 ~ 16987555 (-) True sapcd1
XM_039791557.1 mRNA upstream 95097 17007724 ~ 17020735 (-) True slc37a3
TU309744 other downstream 59379 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 1090958 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 1794482 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 1821382 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 3073132 13809607 ~ 13809679 (-) True trnak-cuu_13
TU309971 other upstream 382495 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 918045 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 918045 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 1457048 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 2525890 19438517 ~ 19438599 (-) True trnal-cag_18

Expression Profile