RNA id: XM_039791553.1


Basic Information

Item Value
RNA id XM_039791553.1
length 2050
RNA type mRNA
GC content 0.55
exon number 17
gene id ahcyl2b
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16917305 ~ 16964944 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCATTTGGACATAGTCTCTCCTCCGCTCACATCCGCTAGACTCGCTATTTGTGTTGGAAAAAGGACTTAGTGAAACTGCAGCGATGTCAGTCCAGGTTGTGGCAGCGAAAATGGCAGAGGTCGAACTCAAAGACGTCCCCACTGTCAAAGATTCACCGGCTGGTTCCCCGATGACACCGACCTCGGAGGGCAAGACCCTCGTCAGAAGCGACCCGCACGAGGCCGGTTCCTCTGCTGCTGCGTCCCCTACAGCGGAGCCCTCCGCGAAAGCCGGGGAAGGCAGCCTGGGTTTGCTCAACCCGAACCCCGCGAAGATGCCACAGGCGTCGGCTATGAAGCGGACGGACCCGCAGCAGAACGGCGGAGAGGCTTTTGTCAACCGTGACGGTACAGTTGCTGAGGCTCCGCGGATGAAAAAGATCCAGTTCGCGGACCAGAAGCAGGAGTTCAACAAGCGCCCCTCCAAGATCGGCCGGCGCTCCCTGTCCCGCTCCATCTCCCAGTCCTCCACAGACAGCTACAGCTCAGCGGCGTCCTACACGGACAGCTCTGACGATGAGACGTCTCCTCGGGACAAACAGCAGAAGAACTCTAAGGGCAACGGAGACTTTTGCATCAAAAACATCAAACAGGCCGACTTTGGCCGCAGAGAGATTGAAATCGCAGAGCAAGAGATGCCCGCCCTGATGGCTCTGAGGAAGCGAGCCCAGGGGGAGAAACCCCTCGCCGGTGCCAAGGTGGTGGGCTGCACCCACATCACTGCCCAGACTGCTGTGCTGATGGAGACTCTGTCAGCTTTGGGGGCTCAGTGCAGATGGGCAGCCTGCAACATCTACTCCACCCAGAATGAAGTGGCAGCTGCCCTGGCAGAGGGAGGTTTCAGTGTGTTTGCATGGAAGGGTGAGTCAGAGGACGACTTCTGGTGGTGCATCGATCGCTGTGTCAACGTGGAAGGCTGGCAACCCAACATGATCTTGGATGACGGTGGAGACCTGACTCACTGGATCTATAAAAAATACCCCAACATGTTCAAGAAGATTAAGGGCATTGTAGAGGAGAGTGTTACCGGTGTGCACAGgTTGTACCAGCTGTCCAAAGCAGGAAAGCTGTGTGTTCCAGCCATGAACGTCAACGACTCTGTGACTAAGCAGAAGTTTGACAACCTCTACTGCTGCAGGGAGTCCATCTTAGACGGCCTGAAGAGGACCACTGATGTCATGTTTGGAGGCAAACAGGTGGTGGTGTGCGGATATGGAGAGGTGGGAAAAGGCTGCTGTGCTGCTCTCAAAGCAATGGGCTCCATCGTCTACGTCACAGAGATCGACCCAATCTGTGCCCTGCAGGCCTGCATGGACGGCTTCAGGCTGGTGAAACTGAATGAAGTCATCAGACAAGTGGACATCGTCATCACCTGCACAGGCAATAAGAACGTGGTGGTGAGAGAATACCTCGACCGCATGAAGAACGGCTGCATTGTCTGCAACATGGGACACTCCAACACCGAGATCGATGTGGCAAGCCTGCGGACTCCTGAACTGACCTGGGAGAGAGTGCGTTCTCAGGTGGACCACGTCATCTGGCCGGATGGCAAGAGGATAGTGCTGCTGGCTGAgGGTCGTCTGCTGAACCTCAGCTGCTCCACTGTGCCGACCTTCGTGCTCTCCATCACCGCCACCACCCAGGCGCTGGCTCTGATAGAGCTTTACAATGCCCCAGAGGGACGCTACAAACAGGATGTTTACCTGCTGCCCAAGAAGATGGATGAGTATGTGGCCAGCCTACATCTTCCTACATTTGACGCACATCTTACAGAGCTGAGTGATGAGCAGGCCAAGTATCTGGGCTTGAACAAGAACGGGCCCTTTAAGCCAAACTACTATAGGTATTAAACCAGTGTCAGGGTTGGCCTCAAGAAATACAAATACTCCCAGAATGGCATATACGCatagagggagaaggagaatgagaacagaaggaaggaaggatggacaGAATAGTCAACACACCTGCTTtatattttgggggggggggactctgACTGAGCCTGA

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0004013 adenosylhomocysteinase activity molecular_function

KEGG:

id description
K01251 E3.3.1.1, ahcY; adenosylhomocysteinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309755 lncRNA downstream 86066 16824829 ~ 16831239 (-) True G228295
TU309741 lncRNA downstream 170265 16746743 ~ 16747040 (-) True G228290
TU309734 lncRNA downstream 381012 16536018 ~ 16536293 (-) True G228283
TU309647 lncRNA downstream 693156 16216115 ~ 16224149 (-) True G228221
TU309501 lncRNA downstream 1385866 15531131 ~ 15531439 (-) True G228120
TU309837 lncRNA upstream 39058 17004002 ~ 17007000 (-) True G228363
TU309844 lncRNA upstream 42805 17007749 ~ 17008981 (-) False slc37a3
TU309843 lncRNA upstream 43001 17007945 ~ 17009590 (-) False slc37a3
TU309887 lncRNA upstream 172326 17137270 ~ 17138275 (-) True G228401
TU309917 lncRNA upstream 256261 17221205 ~ 17222228 (-) True G228423
XM_039791547.1 mRNA downstream 4676 16882811 ~ 16912629 (-) True strip2
XM_039791549.1 mRNA downstream 4678 16882811 ~ 16912627 (-) False strip2
XM_039791548.1 mRNA downstream 4678 16882811 ~ 16912627 (-) False strip2
XM_039792197.1 mRNA downstream 37127 16869736 ~ 16880178 (-) True dhx57
XM_039791736.1 mRNA downstream 48632 16867831 ~ 16868673 (-) True LOC120553391
XM_039791554.1 mRNA upstream 627 16965571 ~ 16972447 (-) True tmem209
XM_039791552.1 mRNA upstream 7588 16972532 ~ 16979035 (-) True prdm4
XM_039791555.1 mRNA upstream 18959 16983903 ~ 16987555 (-) True sapcd1
XM_039791557.1 mRNA upstream 42780 17007724 ~ 17020735 (-) True slc37a3
XM_039792344.1 mRNA upstream 144593 17109537 ~ 17112443 (-) True LOC120553682
TU309744 other downstream 93873 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 1125452 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 1828976 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 1855876 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 3107626 13809607 ~ 13809679 (-) True trnak-cuu_13
TU309971 other upstream 330178 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 865728 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 865728 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 1404731 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 2473573 19438517 ~ 19438599 (-) True trnal-cag_18

Expression Profile