Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039791555.1 |
| length | 928 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 4 |
| gene id | sapcd1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053134.1 |
| NCBI id | CM020931.1 |
| chromosome length | 29109922 |
| location | 16983903 ~ 16987555 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0007267 | cell-cell signaling | biological_process |
| GO:0198738 | cell-cell signaling by wnt | biological_process |
| GO:1905114 | cell surface receptor signaling pathway involved in cell-cell signaling | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU309834 | lncRNA | downstream | 34097 | 16914607 ~ 16949806 (-) | True | G228360 |
| TU309755 | lncRNA | downstream | 152664 | 16824829 ~ 16831239 (-) | True | G228295 |
| TU309741 | lncRNA | downstream | 236863 | 16746743 ~ 16747040 (-) | True | G228290 |
| TU309734 | lncRNA | downstream | 447610 | 16536018 ~ 16536293 (-) | True | G228283 |
| TU309647 | lncRNA | downstream | 759754 | 16216115 ~ 16224149 (-) | True | G228221 |
| TU309837 | lncRNA | upstream | 16447 | 17004002 ~ 17007000 (-) | True | G228363 |
| TU309844 | lncRNA | upstream | 20194 | 17007749 ~ 17008981 (-) | False | slc37a3 |
| TU309843 | lncRNA | upstream | 20390 | 17007945 ~ 17009590 (-) | False | slc37a3 |
| TU309887 | lncRNA | upstream | 149715 | 17137270 ~ 17138275 (-) | True | G228401 |
| TU309917 | lncRNA | upstream | 233650 | 17221205 ~ 17222228 (-) | True | G228423 |
| XM_039791552.1 | mRNA | downstream | 4868 | 16972532 ~ 16979035 (-) | True | prdm4 |
| XM_039791554.1 | mRNA | downstream | 11456 | 16965571 ~ 16972447 (-) | True | tmem209 |
| XM_039791553.1 | mRNA | downstream | 18959 | 16917305 ~ 16964944 (-) | True | ahcyl2b |
| XM_039791547.1 | mRNA | downstream | 71274 | 16882811 ~ 16912629 (-) | True | strip2 |
| XM_039791557.1 | mRNA | upstream | 20169 | 17007724 ~ 17020735 (-) | True | slc37a3 |
| XM_039792344.1 | mRNA | upstream | 121982 | 17109537 ~ 17112443 (-) | True | LOC120553682 |
| XM_039791082.1 | mRNA | upstream | 126453 | 17114008 ~ 17116453 (-) | True | cdpf1 |
| XM_039791719.1 | mRNA | upstream | 129198 | 17116753 ~ 17135130 (-) | True | pparaa |
| XM_039791800.1 | mRNA | upstream | 209386 | 17196941 ~ 17207454 (-) | True | atxn10 |
| TU309744 | other | downstream | 160471 | 16748842 ~ 16823432 (-) | True | G228291 |
| TU309610 | other | downstream | 1192050 | 15771238 ~ 15791853 (-) | True | G228191 |
| TU309380 | other | downstream | 1895574 | 15062263 ~ 15088329 (-) | False | znf800b |
| TU309376 | other | downstream | 1922474 | 15060003 ~ 15061429 (-) | False | znf800b |
| unassigned_transcript_1491 | other | downstream | 3174224 | 13809607 ~ 13809679 (-) | True | trnak-cuu_13 |
| TU309971 | other | upstream | 307567 | 17295122 ~ 17302198 (-) | True | G228465 |
| TU310227 | other | upstream | 843117 | 17830672 ~ 17927705 (-) | False | tafa5a |
| TU310229 | other | upstream | 843117 | 17830672 ~ 18100995 (-) | False | tafa5a |
| XR_005638136.1 | other | upstream | 1382120 | 18369675 ~ 18421407 (-) | False | gramd4a |
| unassigned_transcript_1496 | other | upstream | 2450962 | 19438517 ~ 19438599 (-) | True | trnal-cag_18 |
