RNA id: XM_039791558.1


Basic Information

Item Value
RNA id XM_039791558.1
length 4208
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC120553296
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17021892 ~ 17032722 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtggggagagaaagagtgaaTGAAAATTGAAGATTGgagaagagacagggagagaagtGTACAGGCTTTATTCTCTCTCAATTAAATATCCGACCACTCTCTTCAAGGCTTAAAATAAGTTAGAAAACCTATTGTAGATGGTTTAACCTGGACATACAGCACACCGTGGGAGTTTGGAGGTTATCCCAATGGATACTGTTATAGCCGCATGGGTTGCATTATGCTCCCATTTCACTAATGAACACAAGGACACTGTACGACAGAAGGAGGTGTTTAGTGATCATGGCGGCCACTAAGAGAATGACAAGCACACCGGACTGCATCTACTCCACTGTCAACAGGGTAAAGAAGGGCTGTGCTGCTGGTGAGAGAAGTGATTTCCATATTGCATTAGTGGAAAAAAAGGAAGCTGGGCAAAGAAGAGAGGGAGCACCAAAACTCCCCTTCACCCCATTAGACAACCTGAGTAACCAAGAGTCCCCCATAATGGCTTACAGGAGGCCGAGCTTTAACCCTCACAGCAATGAGAACACTCTCCTGGTGGGCAACAAGCTCCCCAGATCCAATGTAGGCAAAATAAAGGACAAGATTTCTCTGTGGGAGGGGAAGGAACCTACTCATTTACCTATTACCTCAAGTTCTTTGGGCCAGTGCTCCAGTATAAAAAGGACCGAATCACttacaaaaaacagtaaaacttCTGATGAGCAGAGTGCAGAGAGTTGCAAGAGAGTAGCCCACAAGGAAAAGGAAAATCTTGGGAAAGAGAATGTAGCGGAACTTGGGGATTCAAGGCCTTGTTCGCCCGTTGAAACCGGGAAACAGCAAAAAGGGACGCTCAAGAGCAGCAAGCCCAGTGAGTTAGAAAACAGGGAGGATTGCGGCAGAGTTGTCCACAAGGAAAAGCAAAATCATGAGAAAGAGAATGTGGAAAAGCTCGGGGATTCAAGGCCTTGTTCTCCTACAGCAGCAGTGCAGCAGCAGGTGGGCACGTTGAGGAAAAGCAATGAAAGGAGAACAGTTGAACAAACCAGCCAGGAGAAGAGAGCTGTATTCACCCTTTTTAAAAACCTGGATGCTATGAGGGAGAACCATGGGAGAACTCCTCCGGAGCTTGGAAACTACTTCAGTCCGCCTAGCAAGGAAAAACAGGTAGTTATGGGTCAAACTAGTGCAGTGAAagggaagcagcagcagcaggagaacGTGTACACAGAGCCAGGGGCGCCCCCCATCAACCCAGTCCCCAAACCACAGCGTACCTTTGAGCATCCAGCCACCGCCCCCATTGGGAAGAGTCAGAGGCTGGGGATAGAGCAGAGGAACCTCCCCCCACTGCCCTCCATCTCTAAGAAAACTTCCTCCAAACCTCCCTCTGGTGTGTACGGGAGACCCAGGGgtgagagaggcagagacaaCGTCGCCAGGAAATCCTTTGAGTTGGAAGACCTTGCAGGGTCAACTAGCCCGCTGTTCTCTCGCTCACTATCTCAGGAACATCACTATGAAGACATCCCAGACTCATCCAAAGAGAACCCATATGAGGACATAGAGCTGGAGAGTCAATGCTCCCAGCAGTCTTTGCCCTCCTCTCCTGGCGCCGATACTGCCAAGACTTCGAGGCCTGGCTTCTTTAGGCAGAATTCAGGCAGGAGCTTGAAGCTGCTGGACCTGCGGAGAACCAACCAGTCGTCCCACAGCACCAGCAGCGGGGGGGTTTCATCTCCACCCCAGCTCAGCCGTCCCTCCACTCCCACGGGCGGGGGAAAAACCCCCCGGGGCCCcccggcccccccccccccTTTTTGTTCCCAACAGGTTGTACTGAGAATCAACAGCATCTTTGATGCTCGGATCGGGAAGAAACATCTACGAAGGATCTATCATTACGCTGAGACAAGCTCAGGGAGAGTAACAGATGAGAACAGTGACTCTGAGAGTGAAGTTGAAGAAAGATCTAAAGCTCATCGTCAGCGTCAGCGTCTCGTGTCAGTCCAGTCCAAACTGAGCCAGCCAAGCAAGGCCCACTACAATGGTACCAACACCAGAAGCAGCTCTCTCGAACAGGAGCTTCACCAGCGTCTgctttttgaatattttctagttgtGTCGCTGCAGAAGTCCAAGGCTGGAGCCCACTATCTGCCCGAGGTCACACAGCAGTTCCCCCCGAAGCTGGAGCGGAGCTTCAAGTTCATGAGGGAGACGGAGGATCAGCTGAGGATCATTCCTCAGTTCTGTTTCCCTGACGCAAAAGACTGGGAGCCGGTGGAGAACTACCCAAGTGAAATGTTCTCCTTTGTTTTGACTGGAGAGGATGGAAGCAGGAGGTTTGGATACTGCCGGCGTTTACTGCCTAGTGGAAAAGGTAAACGTCTACCAGAGGTCTACTGTATTGTCAGTCACCTTGGCTGTTTCAACCTGTTCTCCAAGGTGCTGGATGAGGTGGAGAGGCGGAGGGCCTTGTCTCCGGCCCTTGTGCAGCCTTTTATGAGAGCCATCATGGAGGCTCAGTTTCCAGCTCCTGGCAGAACCATCACCATTAAAACATTCCTCCCTGGCTCAGGCACTGAAGTGATGGAGCTCTGTCGACCCTCTGACTCGCGCCTGGAGCATGTGGACTTTGAGTGTCTGTTCTCCTGTCTGAGCCTTCGCCTGCTCCTCCGGGTGTTGGGGTCTCTGCTGCTGGAGCGAAGGGTCATCTTCACAGCTGACAAACTCAGTACTCTCTCCCAGTGCTGCCATGCTGTCGTGGCGCTGCTTTACCCCTTTGTATGGCAGCACACTTACATCCCTGTGCTGCCCTCGGCCATGCTCGACATCGTCTGCACTCCAACCCCGTTCATCGTTGGCCTGCTGTCCAGCTCCCTGCCCCAGCTCACTGAGCTGCCCCTGGAGGAGGTTCTGGTTGTGGATCTTGGAAACAGTCGATTTCTCAGACAGTTGGACGATGAGGACTCCATCCTGCCTTCTAAGCTCCAATCAGCCCTGGAGAATGTtctggagaggaggagagagctcGCCAatgacagaggaggagacacacCTGGTGATTCTGGCCACCTTAGCACCGTTGTGTCCGAGGCCTTCGTTCGTTTCTTCGTGGAGCTGGTAGGCCACTATCCGCTCTTCATCACCGGCGAACGGGAAGACGGctactcctcctcttcttcctccccgGTGCCCTGCTCCTTTCAGCGCGAGGGTTTTCGTAAAGCGATTCCGTCCAAGACGGTGCGCCGCTTCCTGGAGGTCTTCATGGAGACCCAGATGTTCGGCTGGTTCATCCAGGAGAGAGAGCTGCACAGGCAGGCTCTGAGAGGACTGTTTGAAGTGAGGGTGCAGGAGTATCTAGACTCCATCCACGAGAATGAACACCGGAGGGTTAACAGGTTTCTCAAAGGCTTGGGAAACAAAATGAAATTTCTTTCCAAGAAATAATGCCGCTACAACTgcacaaaaagagacacaaactacAAAGAAGAAGCACTGAAACAAGGAAAGACTTTACTGCAGAAATCCAAATGATCATTTGagtgcttttttgtttttttaagattgttcACGCCATCCTcatctgtgtcagtgtgtgagaCTTTTGCTCAAGGACTCATGATAGACACAAGGAAACTGTGGTGAATCACAAATTGTTCCCACCAAAGGAAAATCCTGCTGTACTTCACATAAATAAAGAAACGTGGGGCTGTAGACTCAGAAATATTTAAGAGGTTCCTGGTTGTTGTGCTTTTTAAAATTCTATATTCTTCAGGCAACAACATTCCTgagaaaaaatgtataaaaagtaaaattggTCTTAGGTATACCGCTGTAAGCTACATGTGGCCGACACATTTAAGGGAAAACGTGAATATGTTAGAATGGAATGTGAATGGTTCTATTCAGGGCACAAGGGGTCGCTGAATGGTTTGATGAGTACGAAAATGAGGTAAAGGATGGTAGTCAGTCAGCCTTTGTATGCACTGTAACTGGACTTGAAAGTTCACGGTCATGGTATTTTCTGAATCCACTAGGGGGCAGAAGTATATTTTCTCTGATTCCATGATCTTGACACTACTGTCAGTGACGGaccagaaaaagacaaagacCTGCTTTCCCGCTCTTTAATGCTATACTTTTCTTTTAGTCATAACAGTGACAACATcacaagtaaataaataaaataaatatataaatattctcTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309830 lncRNA upstream 3900 17017545 ~ 17017992 (+) True G228356
TU309829 lncRNA upstream 6586 17015078 ~ 17015306 (+) True G228355
TU309828 lncRNA upstream 7228 17013681 ~ 17014664 (+) True G228354
TU309827 lncRNA upstream 11162 17007802 ~ 17010730 (+) True G228353
TU309792 lncRNA upstream 102321 16917000 ~ 16919571 (+) True G228326
TU309853 lncRNA downstream 77046 17109768 ~ 17112423 (+) True G228374
TU309854 lncRNA downstream 77046 17109768 ~ 17111350 (+) False G228374
TU309855 lncRNA downstream 81103 17113825 ~ 17115343 (+) True G228375
XR_005638158.1 lncRNA downstream 86377 17119099 ~ 17120584 (+) True LOC120553376
TU309867 lncRNA downstream 104549 17137271 ~ 17138351 (+) True G228384
XM_039791556.1 mRNA upstream 16578 17000945 ~ 17005314 (+) True cdkn1d
XM_039792432.1 mRNA upstream 41135 16980006 ~ 16980757 (+) True LOC120553739
XM_039791550.1 mRNA upstream 139372 16880276 ~ 16882520 (+) False morn2
XM_039791551.1 mRNA upstream 139372 16880511 ~ 16882520 (+) False morn2
XM_039791738.1 mRNA upstream 154096 16866314 ~ 16867796 (+) True stmp1
XM_039791798.1 mRNA downstream 155464 17188186 ~ 17196857 (+) True wnt7ba
XM_039791799.1 mRNA downstream 155464 17188186 ~ 17196857 (+) False wnt7ba
XM_039791156.1 mRNA downstream 201290 17234012 ~ 17237437 (+) True LOC120553078
XM_039791148.1 mRNA downstream 205213 17237935 ~ 17260868 (+) True kdm5a
XM_039791149.1 mRNA downstream 205213 17237935 ~ 17260868 (+) False kdm5a
TU309802 other upstream 99069 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 190649 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other upstream 190649 16771062 ~ 16831243 (+) False cald1a
XR_005638140.1 other upstream 1824062 15168604 ~ 15197830 (+) False LOC120553256
TU309001 other upstream 3017043 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1495 other downstream 557369 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 1497443 18530165 ~ 18531168 (+) False srr
TU310402 other downstream 2377768 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 2426361 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 2599225 19631947 ~ 19808412 (+) False LOC120553210

Expression Profile