RNA id: XM_039791566.1


Basic Information

Item Value
RNA id XM_039791566.1
length 2553
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC120553300
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10108319 ~ 10116627 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TctacacttaaaaaaatactttaaattgATACGCTTGCCTTCCCGCATTTAGATGCCCCCTCCTCACCCCACCCACTAAACTGTGGCGCTTGGCACGTCGACTTTGTCCTTCAGTTCTTACCGAAAGCAACGTGGTTGCAGCGGTGTGTCTTTAGTTTACATATCTGAACAACTCGTGAGAATCATTTCTATAGTTTTTTTCAGTGCAGTTGACTTGTGTGAAGCTTCCTTTTCCCTGCAAGGTTCAACGTTAAAGGCATTAGCAGGTGTCACGGAGCTCCAAGATGCCTAACAAAAGAACAAAGAGAAAGTTGGCAGACTCAGAGCCGCCGTCCAAATCGTCCAAAGTCACCTTCCTGAGCCCATCTCTTATCCTGCTGGAAATCCCCGCTGACACCAACACCAGCCTCCCAGTGTGGGAGGCCATGAGATCCCAGCAGGTTGACATCGCCTGGACCGTTAACCCTTACAGCATCAGTGTTCACTTAACCCCTGTGAGCTCTACGCAAGGGAAGATTACAACTTCCAGAAAAAGTGAAAGCACATCCAGTGTGGCGCAGACCATAGTGCCTTCCACCAGGATCCTGCAACCTCAGATGGTCATCCAGTTCATCACTCAGCAGCATGGCGCCACTCAGAACTCCTGTGTCCTGCTCACCCTTTCCCAAAACGGCACCCATTTGCTGCCGAGCCCACCAGGTCAACCACTGAAAATACCTCCAAACCCTACACCAGCCACTGCCGTCATCGTTTCCCTGCCTCTCATCATCACCCAACAACAGCCTCCCCATCAGCCTGGCACCTCTACCAAGAGACAGATCCTACCCGCCACCCAGAGCCCAACAGCCACTCCCACCAAGCAGCGAGCCCCGTCCAAAGTGCCTGTCCCCTCTCTGTTTCACACGAGGAGCTCCCCTGACATCCAGGTCTGTGACAGATTCCTCCTGGGTTTGTGTAGCGCAGGGAAAAGGTGTAAGATGCACCACACTCCCTACCCGTTTCACTGGCAGCTGTGGTGTGTGACCACCCACCAGTGGATCGACATCCCCTCTCGCTCTCAGGTCTTACTGGAGAGGAACTACTGCAATGTCGACCAAAAGCTCATTTACTTCAAGGATGGGCTTGTCCTCTACACTCTTGTCTTTGACTCGATGAAGTTGAACAACTCATTTCACTATGGTGGGGTTAGACGACTGACTAACTCTGACAGTCTGGTCAAGAACCCTTACTTTGCCAGCAAATGGAAAATCTACTGGTGGAACAACCTGGAATGGGAAGAGTACAACAAGGATGTGTCAACCTCGCTCCTAAAGAAGATGAGCGAAAAGGAGCCCGAGTGTTCCTTCTACATTGGCTCACAGCAGTACAAGGTGGACCTCGCCACCATGACCCAGTCCAACGTCACCACGGGGTTCCAGAGAAAAGTTCGCTGCAGACCCATCTACTGCTCCCCCAAATCCATGCAGCCTTACCTGCAGACAGGAATCCAGCCTGTCTCCACCGAGCCTGTCGGTGATCCTCCAGGTGAAAACTTCAGCGTGGACCCTCTGCAGGAGTTCAGCTCCTGGTATCCTCCAGTGTGGTGTCTGGCCTCGGAGCAGGACTACAGCCTAGTGGACCTTCCGGCTGGCACACAGGCCTACCGGAGTATTGAAAACCTCTTCAATGAGAGTCTGCCTGAGACCAAGGTGGACATCATCAGCATCGAGCAGATCCAGAACCTCCTCCACTGGGACAAGTACCAAAGGCAAAAGGCGTACATGCAGAAGCAGCACACCAACTCTAAGGAGCCTCTTGAGAGACATCTCTTCCACGGGACAACCAAAGAGCCCTCAGAGGACATCTGCCACAACAACTTCGACCCCCGCATGGCCGGGGTCCACGGAACGTCTCAGGGTTTTGGTTCCTACTTCGCCACCACCGCTTCCTTCTCCCACAAGTACACAGCCAGGGAGGGGCCAGATAAGGTTCGCCACATGTTCCTAGCCAAAGTCCTGGTGGGGAAGACGTGTCTCGGAAGGTTCAACTACCGCAGGCCGCCGCTTAACTCCAAGATGAGGCAGTTCTATCTCTACGACAGCTGCGTGGACAACATGGACAAACCCACTATGTTTGTAGTTTTTGATAGCTGTCAGTGCTACCCATACTACCTCATCAAGTACAAAGACCTGCCCCAAGAGATTGATATTTGATGAAGAGGACAGGCATTGATGGCACGGGAGTTAGTTTATGCTAATCGTTCAGACGTAAACAGTGTTAGAGTTGATGTAAGAGGACCCCGAAATGTTATCAACTGCATCAAATGTTGTCAGTTGCAGCAAATGCTCAGTTCGCTCACTTAAAATGTGCAATATATATGGATGATGTGCAATAATGTTCTACTTGACAACAATGAAGACAAGGAACCATACAGTAAAAATTTTGTATAAACTTATGAAgcactttatttttcaaaatgtctttattttagttattcaaacattttaaatcaatGGAAATAagtacttttgtttttctttcaaagCTGTTCTGAATCAAATTGACATCTGTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638107.1 lncRNA upstream 171726 9934175 ~ 9936593 (+) True LOC120553125
TU307795 lncRNA upstream 240234 9867575 ~ 9868085 (+) True G226930
TU307786 lncRNA upstream 281794 9796473 ~ 9826525 (+) True G226921
TU307787 lncRNA upstream 301717 9806242 ~ 9806602 (+) True G226922
TU307781 lncRNA upstream 354203 9751944 ~ 9754116 (+) True G226918
TU308026 lncRNA downstream 421569 10538196 ~ 10538689 (+) True G227088
TU308047 lncRNA downstream 508819 10625446 ~ 10627982 (+) True G227107
TU308048 lncRNA downstream 512181 10628808 ~ 10630212 (+) True G227108
TU308058 lncRNA downstream 549082 10665709 ~ 10667280 (+) True G227116
TU308091 lncRNA downstream 589283 10705910 ~ 10709545 (+) True G227139
XM_039792488.1 mRNA upstream 518 10105211 ~ 10107801 (+) True LOC120553783
XM_039792487.1 mRNA upstream 996 10104931 ~ 10107323 (+) False LOC120553783
XM_039791146.1 mRNA upstream 4714 10100696 ~ 10103605 (+) True LOC120553071
XM_039791601.1 mRNA upstream 78415 9952600 ~ 10029904 (+) False chrm2a
XM_039791603.1 mRNA upstream 78415 9953194 ~ 10029904 (+) False chrm2a
XM_039791573.1 mRNA downstream 24155 10140782 ~ 10147571 (+) False foxm1
XM_039791576.1 mRNA downstream 24155 10140782 ~ 10147571 (+) False foxm1
XM_039791575.1 mRNA downstream 24819 10141446 ~ 10147571 (+) False foxm1
XM_039791574.1 mRNA downstream 25003 10141630 ~ 10147571 (+) True foxm1
XM_039792425.1 mRNA downstream 44104 10160731 ~ 10161654 (+) True LOC120553731
TU307644 other upstream 866970 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 935099 9134594 ~ 9173220 (+) True lhfpl3
TU307294 other upstream 1675622 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 2707920 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 2776060 7323070 ~ 7332259 (+) True amdhd1
unassigned_transcript_1481 other downstream 75699 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 77803 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1483 other downstream 78493 10195120 ~ 10195206 (+) True trnay-gua_59
TU308063 other downstream 580627 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 615442 10732069 ~ 10737503 (+) True G227141

Expression Profile