RNA id: XM_039791585.1


Basic Information

Item Value
RNA id XM_039791585.1
length 4137
RNA type mRNA
GC content 0.48
exon number 26
gene id ppfibp1a
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7978077 ~ 8012811 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGATGAAAACTTCAGTTCTGAGAAATTCAATGAGAAGGTGGACGCTAACCATGACGCTCCTTTGAAAAGTCTCGAAAGTGTTTGGAATAAAGCCGCCGGAGACTGCAGGGTCCCTTATTTTACATTTCCTGGTCGAAAACTaTTCATTCACAAGATGATGTCCGACGCCAGTGATATGTTGGCAGCAGCTTTGGAGCAAATGGATGGGATCATAGCAGGGTCCAAGGCCATGGACTACTCCAACGGGCTGTTTGACTGCCAGTCGCCCACTTCACCTTTCTTGGGTGGCCTTCGGGTGCTGCACCTGCTGGAGGACCTGCGGGGAGTGCTGGAGCTCATGGACAACGAGGAGAGGGACAACCTGCGGTGTCAGATCCCTGATTCCACTGCAGAAGGGCTGGCAGAGTGGCTGCAGGGACGATTGACTAACGGCCACAGCTCAGAAGCAGTCTACCAAGAACGTCTGTCACGACTGGAAAGTGACAAAGAGTGTCTTATTCTTCAGGTAAGTGTTCTAACAGACCAGGTGGAGGTACAAGGTGAAAAGATTCGGGACCTAGACAACTGCCTAGATCATCATCGGGAGAAACTAAATGCTACTGAGGAGCTGCTgcaacagGAGCTGTTGAACCGGACAACACTGGAGACCCAGAAGCTAGAGCTGATGACCGAGGTGTCCAGTCTGAAGCTGAAGCTGACGGCTCACAGGGACAATGAGGGTTTGTACCAAGAAGTAACAGACCTGCGGTTCAGGGTGACTGACATAGAGAATGAAAGACTGCAGTGTGAGAAGAAACTTAAAGCTACCAAACGTCCAAAGCGGAACACTGAGCGGTTCACTGGAGATGAGGAGGAGCTGCAGCTTCTGCAGAAGCAGCTGGAGGAGCGAGAGGTGGAGCTGACGAGGCTGAAGGACGAGAGCAGACTGAGGGTGGAGAGCCACAACAGAgctgagggaggagagagagatTCAGAAGTGTTGAAGATGAAGATGGTGTTGGAGTCACTGGCGTCGGCCAATGATGTGAAGGAACGAAGGATAAAGGAGCTGGAGGAGTCACTCACAAAGTGCAAGAAGGTGCAGCAGCTGGTCAAAGAGAAGTTGGAGGAAGATGACTATGACGATATCCCAGAGGATCCCTCGGCTTCTGTATCCATGGAGATGGATCAGGTCACCCTGGTGTTGGAAGGGGAGGCAGGAAGAAACTCTGGCGAGTCTATTCCATGTATAGCAGTGCTTTCTGAAATGAATGACCTGGACAGAGAACGACAGTTACAGGCAGCCAAAAGTTCCTTAGATGTCCCACAGCCAGGCAGCCCAGCCATAAGCAGCAGCTCTGACCAGGCCAAAAATAAAGCCGGACCCGGTTCCTCATCTCCTACCAGAGCAAACGCCACAAGCGATGACAGCTTTGGTTCCAAGAAGGCCCGGTCTTCTTTCGGCCGTGGCTTCTTCAAGCTGCGTGGAGctgagACAGAACGTAAAGGCACAGAGCACCTGGATTTGGCCGGTGTTCCTCTTCAAAAATCTCATGATGGAGCCCCCCTGCCTTCCTCACCCGAAACCAAAAAGAAGTCCAAAGGCTTCATGAAATTCTTTGGCAGACTAAAGAGGAGTCACTCTACCTCCTTCAACCTGGATGATGCAGCAGAGACGGAGTTCAGGAGGGGAGGAGTCCGAGCCACAGCCGGCCCTCGACTAGGCTGGTCACGTGAACCTAAGCACAATGCTGTCGATGTGCCTTTCTCGCGGTGGAGTAAAGATGAAGTGTGTGCGTGGCTGCACGAGCAGGGCCTTGGTTTATATGTTGCCCAGGGTCAGAGCTGGATCAAATCGGGACAAACGCTACTGCGGGCATCACAACACGATCTGGAGAAGGAGTTGTGCATGAAGCAGCCTCTCCACAGGAAGAAGTTGCAGCTGGCTCTACAGGCTCTCGCGTCAGAGGAGGACGATTTAAAGGGCAGACTGGACAGCAACTGGGTGACCAGGTGGCTGGATGACATCGGCCTCCCGCAGTACAAAAGTCACTTTGATGAGGCTCGTGTTGATGGACGCGTGCTGCACTACCTGACGGTGgagGACTTGCTGTCTCTGAAGGTGGGCAGTGTTCTCCATCACCTCAGCATCAAGAGGGCCATTCAGGTCCTCCGCCTCAACTGCTACGAACCCAACTGTCTCAGGCGACGGCCCTCTGATGAGAACAACATGACACCAGCAGAGATCTCCCAGTGGACCAACCACAGAGTAATGGAGTGGCTCCGGTCTGTGGATCTGGCAGAATACGCTCCAAATCTGAGGGGCAGCGGTGTTCATGGAGGACTGATGGTGTTGGAGCCCCGCTTCAACGTGGAGGCGCTCGCCCTTCTGCTCAACATTCCCCCCAACAAAACCCTGCTGAGGCGCCACCTGGCCACACATTTCCACCTGCTCATCGGCTCGGAGGCGCAGCGGCTCAAACAGGACTGTCTGGAGAACCCCGATTACACCGTTCTCACCGCTACCGCCAGGGTCAAGGTAAAGCCTAGACGCCTGTCATTCGGTGGTTTTGGCACTTTGAGGAAGAAACGTCAGGACGATGGCGAGGACTACATCTGCCCCATGAACGTGGAAATGCCCAAGAGCAGCAGCTTCCAGAAGGGCCTCCAGATCTATGAGGAACACCTTGACCACCTGGAACAGATGGAAGACTCTGAAGGGACTGTGAGACAGATAGGAGCATTTTCTGAGGAAATTAACAATCTAACGATCATGCTGAAGGAAGATGAGTTTTCTCACGAGATCTCCGTCGAAGCCGATCACAACTCTAGTGTTTGATTGAGACACTTTGTGAAATAAGAATGAACTGTGCCAACCAGAATCCAAATCCTCCCACCAACCGTTAGTAGAACATGTGAGACCTCcacttttacagtattttaattATTCAGAAGTACAGACATATTTTTTGACACATATTTATTTAAGCTGTCCAAAATATAATGCATGAACGTAAAATGCAAGATTTTATTGCATTAATGTACCTCTTATAATTCaagcatgtgtgttttgttttttagtaaTCGGTGAGGTAAGGATACATGTTAGTTTTTCTCATGTCTCCCCTTTATTTTGAGTGCAGTACTCAAGTTTTCATGTCCTCAGCTACAGtcagatttatttttgttgtggTACGGAAAGTTGCTTCATAAGTTCATTCAAATTACAGCAAACACTCTCTCTTTTACTTCTCATGATATCTAGCTGCACAGATAGTTTTTGTTTGCCCAGGTTTTGAAATATCTGCCTCCTCTCCAACTATAGAAGTGATTGGGATTTTGTGTGTGGTGCTCACAGCATTGAAAATTTAGCAGTTCATCTTTTCAAAAAGTGTCCTTGTTAACACTGTATATAACCCTAACACTGAACCGTTTCCATTGAAACCACTTCTTTCTATTATGAAAACAGCTGATAATGTGTTCCGAGCATCACACTGCTTCTGGACAGATGTTGCTGTTGCAGTTTTCAATCCTGTGAGCAACCCACATGTAATGCACAGTGTTGGGGTTCAGGcagatatctcaaaacctggaCCAATACAACCTAAACTATCTGCCTGACTAGATACCACTAGAGGGGGTAGTAAGAAAatgttttgggaaatatgccTATTTGCTTCCTTTCCTAGAATTCGATGAGGAGAGGGATACCACTCTTGTGTCTGTGCCTTTTTAAGTATGAAGCTGCAGCCAGGAGgtgattagcttagcataaaaactggaGGCTTCTCTCTCTCAAAAGCCTACCAGAACCTCTcaagctcactaattaaaatGCATCTCTTTAATCCAAATGCTGTTTACCACTAAATAGTTACAACACATAATGCTCCCTAAAACCACAAATTGACCAAATGAGATGCATGTTAGTGAGCTTCAGGGGTGCTGATAGGTGTATTCTCTCTgcttctagtctttatgctaagctaataaACTCCTGGCTAGCTCTATACTCAACGAGTGAAATTTATTCTCTCAATCTGTGTGCATGAAGTGTTTTTTCTCGAAATGTCAATCTCTTCCTTTTAAGAAACTGCATGACTGAAAGTAAACAtggaaaccagtttttaaattgatggtaataaaaaggagaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638193.1 lncRNA upstream 22592 7891409 ~ 7955485 (+) True LOC120553625
TU307137 lncRNA upstream 270507 7616188 ~ 7707570 (+) False G226452
TU307138 lncRNA upstream 356346 7616188 ~ 7621731 (+) True G226452
TU307120 lncRNA upstream 408875 7566730 ~ 7569202 (+) False LOC120553156
TU307093 lncRNA upstream 446057 7530442 ~ 7532020 (+) False LOC120553154
TU307206 lncRNA downstream 11550 8024361 ~ 8028661 (+) True G226505
TU307208 lncRNA downstream 34968 8047779 ~ 8057052 (+) False G226507
TU307210 lncRNA downstream 38961 8051772 ~ 8057617 (+) True G226507
TU307219 lncRNA downstream 247522 8260333 ~ 8262877 (+) True G226515
TU307221 lncRNA downstream 247522 8260333 ~ 8306828 (+) False G226515
XM_039792247.1 mRNA upstream 80594 7895545 ~ 7897483 (+) True tnnt2c
XM_039791873.1 mRNA upstream 90552 7869761 ~ 7887525 (+) True LOC120553463
XM_039792172.1 mRNA upstream 372239 7592879 ~ 7605838 (+) False LOC120553589
XM_039792174.1 mRNA upstream 372239 7592998 ~ 7605838 (+) True LOC120553589
XM_039791255.1 mRNA upstream 408774 7566655 ~ 7569303 (+) True LOC120553156
XM_039792276.1 mRNA downstream 413824 8426635 ~ 8429716 (+) False rps16
XM_039791157.1 mRNA downstream 449513 8462324 ~ 8464094 (+) True myf6
XM_039791202.1 mRNA downstream 455850 8468661 ~ 8471034 (+) True myf5
XM_039791529.1 mRNA downstream 502777 8515588 ~ 8565355 (+) True acss3
XM_039791532.1 mRNA downstream 789737 8802548 ~ 8807170 (+) True washc3
TU307011 other upstream 577678 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 645818 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 657028 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 830737 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638177.1 other upstream 2604874 5283759 ~ 5373203 (+) False abcc9
TU307294 other downstream 413880 8426691 ~ 8432697 (+) True rps16
XR_005638164.1 other downstream 1121783 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 1224453 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 2179515 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 2181619 10194430 ~ 10194516 (+) True trnay-gua_58

Expression Profile