RNA id: XM_039791601.1


Basic Information

Item Value
RNA id XM_039791601.1
length 8867
RNA type mRNA
GC content 0.42
exon number 4
gene id chrm2a
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9952600 ~ 10029904 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGAGAGTAGTGATAGCCGAGGCGCTTTTCCTTTCCAAAGACTGTCTCCAGAAGCATGTCCTCAGACATGCAGCCACGGTGCGATGAAGCGGACCAAAAGACGCCACCAGCGTGACAGCATGAAAGCAGtggcCATGGCTATTAACCATGAACCTGGAGTCAGACACGCCCATTGCTTCCTTCTGTCAAAAAGAGCCTCTTTGGTGctacactgaacacacactctTCGAGTATGCCATCCAATTGCAAGAAAACCCAACGGACTGCTTAGCACCCGCTgTTCCATCTGAGTAGGAGGTGGCAACAAAAGACCAAATGCCATGGATGTATTCAATTTCACGTACTGGAATGCCTCTGAAGGCAATGACACAGAAGTTGTGGAAGAGAGTAAAAGCCCCTACAAGACTGTGGAGGTGGTGTTCATCGTGTTGGTGGCCGGTTCCCTCAGTTTGGTTACAGTTATTGGAAATATCCTGGTCATGCTTTCCATCAAAGTTAATAGGAACTTACAGACCGTCAACAACTATTTTTTATTCAGCCTTGCATGTGCTGACCTAATTATTGGACTTTGCTCTATGAACTTGTACACAGTCTACATAGTAATGGGGTACTGGCCCCTGGGCCCGGTGGTGTGTGACTTGTGGTTAGCCTTGGACTATGTCGTCAGCAATGCATCTGTCATGAATCTTCTCATCATAAGCTTTGACAGATATTTCTGTGTCACCAAGCCTCTCAGCTACCCTGTCAGAAGGACCACCAAGATGGCAGGAATGATGATTGCAGCAGCATGGGTCCTGTCtttcatcctctgggcaccaGCCATTCTCTTCTGGCAGTTCATTGTTGGTGGGCGGACAGTGCCTGAGAAGGAGTGCTACATCCAGTTCTTCTCTAATGCCGCAGTCACTTTTGGCACTGCCATCGCCGCCTTTTACCTGCCTGTCATCATTATGATTCAGCTCTACTGGCAGATCTCCAGAGCGAGCAAGAGCCGTGTGAAGAAGGATAACCGCAAGCCGCCAGGAGCCAATCCAGAGCCCCTGTCGCCTGGCCAGAGAAGGATAAACACACCAAAACCCAACAATAACAACGTTCCAGGGGAGGACACAGCACGTTCCCAGAGCCAGAATGCTGATGGAGCTAACCAGCATGACCAGCATGATGGAAAACTGCAAAATGGCAAGGGACCTTCCTCAACCTCTGCTGAGGGAGAAGCCGAAGGTGACGACGTGGCAAAGGAGAACTGCACTCctggagaggagaaggagagctCCAATGATTCAACATCTGGCAGTGTGCCTGCGTCGATTCAGAAGGATGAGGAGGCGGCACCATCCGCCGCTAACTCCAGTGCCGAGACAACCCAGCCACTCCCACGTCAGCGAGCCAAGGCAGGGGGCTCCAAGCTGACCTGCATCAAGATCAAGACTAAATCGCCCAAGGGTGACTGCTACACGCCATCCAACGCTACTGTTGAGATCGTCCCAGCCACAGAGCGGCAGAATCACGTGACACGGAAGATTGTGAAGATGACAAAGCAACCTCccaacaagaagaagaaaatgccGCCTTCACGGGAGAAAAAAGTTACCCGCACCATAATGGCCATCCTGGTAGCTTTTGTTGCCACCTGGACTCCTTATAATGTCATGGTGCTTATTAACACCTTCTGCTCCAGCTGTATCCCCAACACAGTGTGGACTATTGGCTACTGGCTGTGCTACATCAACAGCACCATCAACCCGGCCTGCTACGCTTTGTGCAATGTCACATTTAAAAAGACATTCAAACATCTTCTTCTCTGCCAATATAAAAATATCAGGTCAGCCAGATAAATATGGGCCACTTAGGAGGAAGAGTTGAAGTataaaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggcatgtcAAAGACTGCAAGAGTACATTTGAAATTACTTTCCactgttttatctttttgtttttgaatttcTCTCTCAATAACCGGTTGTAGCACTTTACACAAGTTCAACTGATGCCAGTTGCGTTTAGATCTGTCGTGCAGAAGCAGCATAGATTAGTAAGGTTGTGAAAAATTCAGTTTGACTGAGTtgtaagctaaaaaaaaatgagggTGTGTGAGCAGGGACCACTTGGGAGTGACACTGAGCTGATAGAAAATGAGAAAAGTTAAAGAGCGAAGGAAGATCTGCACTGTACGAAAATACAAGACTTCAAATGGGAAAATAGGGCTGACTGAATTTACAAACCTAAGAAGTTTAAAGTTCAGTGGAGATACCTGTAGATAACTGTACATATCAGTGCATACTCAATATTTATGTGGGTGTGCTAGCTCGGAGTATGTGGGTACGCCCATGTGTGCCCCTCTGCCTGCAttttttctgtctgtatgtgATACTCATCATGGTACTTCCAACCAGCAACATGTAGAATAAAGTGGGGCAGCTTGCGTAGATTGCCTCTAACATGGTCACATCAGGACTGGATCTACCAATGAGCCCCTTTGGGAATGAGTTGCCATCAATACATtatagatatataaatatattgaaGCTGTACAATTACCTACTGGTGGCGTTTTATTCATGCAGGTGGTAAGGTTGCTTTTATTTGGCCAAATATGTCTCAAAAGTTCTGCCTTCACCTTAATAAATGAATGCAAATGTGTCTGTGCTCACAGccttaaaaaatgacattttaaaaattccAACAGCAGCATGTCTCTCCATAAACAATATCCTGGCTACACAGACCTTTTTAATAAAGAGATAGTCTATCTCACAAGTGAGaaaatgttctttttctttACAGGATGTTGACCCATTATGTGCCATAAAATAGAGATATATTTATCCAGTAGAGACAACTAGTAATTTGGATACTACTAGAGAAATAACCCACATTGGAATTGAAGGAACAGTTCAACAATTTGGGAAAGACACTAATTATCTGTCTtcccaagagttagatgagaagattgataccactcatgTCTGTAGATATGAAGCAGGATACagttagcatagcttagcatagaGACTGGGAGCAGTGGGgagctgctagcctagctttgtacaaaattttaaaacaaatcagtCTATCAGCATCTCTAAAGCTCACCAATTAACATGTCATATTTCGTCTGTTTCGTGTGTAAAATAACCGAAGTGCAAAACGACAGGTTGTGGTTTTATAAGGTTTATGTGTGggactatttattttttggcaaGGAGCAAAAATCTGAACTCTTGTTGTCATCGTTAGGAAATCACTACACCCAGCTAAGAAATAGCCCCTCACGTTTCCCCCATAGAACCACAActtgttttcacatttttaatttgtattaaaaaaaactcactgaGTATAGCCTGTCTTGTATCATCATAGAGAATAATCAAATAgctataacaacaacaacaacaacaacaaacaacacaagtTATGactaaataaagaaaacaaatgtggcATGAGATTGTTCAGTTGCACTCTTTGATTTGCCAGCCGATCATACCAAATCAAATGACGTCAGCTTTTCCAACTGCTGACaggatgatttattttatggtgGTTATCAAGATGCCTATGTTTGCTGTCACTGCGAGGAACTGTCCTGCTCTGTATGTGAAACAGGTGGCTGGAGCTCAGAGCTGTGGTTTATTACTGTCTTTGGGAAGGCTTTGAGGGTGCGTGTttctttggtgtgtgtgtgtgtagatgagtGGGAGACATCATACGATTCTGCTGGTTAGTAGAGTGATGTCACAGCATGTACTGTACTCACTGTACTGATGATTGtgaagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgtgtgtgtgtgcgcgtgagcTCTGAAGTGGGTGTGGGTATATATGCTGATGTGTGTTTGCTCCAAGAGTGGAGTTTACTTCTGATCACGGGTCACAACCTTGTGATTTAAATAAGGGCTATTTCCGCGTctttactgtacatttttgtaacccatctcctttttcttttttagaaaattaacAAGCGAGTTAATTCAGTCTATGTAAATCATTTTATTCTGAGATTGGAAATAATGAATAGTTGTGTCAATTTCAATTGGAAAACAAATGAGAAAATATCAATTTCCTGTAAGACATGTTCCATGTATTCATGCATGTCATCCATCATTTCAACCTATTAGCCCATTCTCAGTTACATTAATGTATGCTCACCAGTTGGAGTGATGAATATTCAGGAGCATTTGCCATTAGGAGGTTGCCACAGTGGCTGGTAGGGGGGCTTTGCAAAGATTTACGCCTGCACCGAATAGCTCCTCAAGGCTGTCTACTCAAACCGAGATCTGGGACAGATCCTATAATGAAAACTCACCATGAGGCTGATCAGATTATGGGACGATGTGGAACACCTACATTTGAGATTAAAGATTGCCCATTACACGCTCTGCTTGTGCTTGCATGCTACACTCCTATGTCCCACTTAGTGCTCCACTCAGTCCTGATCCTGTTATAGTCTCTACCTCATATATGAGGTcatgaatgtaatgtaaatagcacacatatgtatgtgtatgtatatgagCTTGCTGTAATAATAATTATCTTTCTCCTGCACTCATTCTAGCCTTCCTTCCTGCCATGTTCCACTGTAAAGCTCCTATATTTGCAGAACCAGTGCAGGATAAACATCCCTGCACATGCATTCAAATTATGTAGTTGCAGTCACAGAAATTAATCACAATTTTGCATTAGGCTAGCACACTGACATTTCCTTTTCGTGGCTGGCAACCTACAGCAACATGGTAAATACTATGTTAAAATACCAGGCATCCATAAACTATGGATGCATCTCCAGCATGTGGCTGtacatcagtggtggaagaagtatccaGATCCATTACTCAAATTAAAGTTGCAATATcgcaatataaaaataaaagtcctgcgTTCAAAATATTACTAAAAGGCACACCCTGTTTGATTTTTAAAAACTTCAGACTCACCCAGAAAAGCATTAGCTTACATTACATTAGCACTGGGAGCAGTGAGgagctgctagcctagctttgtacaaaattttaaaacaaatcagtCCCTGCACATGCATTCAAATTATGTAGTTGCAGTCACAGAAATTTATCACAATTTTGCATTAGGCGCACCCTGTTTAAAAACTTCCGACTCACCCAGAAAACAATTGTATAGGTTGGTTGTGGAAGCAGCTTATAACGACCCATAACTTACGTTTGTTAGGCGGCGACATCTTATGGCTGTAATAATTATCGCGAGAACAAAcaaggaagtaaggtgacagtatagtatagtatagtaagcATAAGAGTGCCAAACTCCGTAAGGACAAAGGTTGGTGTGGTGGCTGTGTCGATCAAAAACAGGAGACTGGAGTTTGGGTCCCGAGTGAAACCAGAAGTCAAcagtcacttttttaaatttaccaACTTTTACAGACCTAAGTCTGTGACGTAGTGAAGtccttattttaattttacatgaCTAATTTTAAGCCAATACCTGATGTTTTCTAAACGTAACTAATtctgtttcacaacgttaactaTGTGTTAAAAATGGCGGCTTTTGCGTTAAATAGAACGGTTACGTGATTAAAACTGCCACCACGTTCCAAGTTACGGTAACGTGTTTAAAACGGCCATCGTGCGGCCGTGAATAGAAGGTCAAATATGTCATTTTGGGAGTCACTGGCAACCTGTTGTGTCGTGTAGGAATGAGTACGTGTTGAAAACTCAGCTAATCTGTTTGTTTCATCATGTCTATGTGGATATGGTTTGAGCAGATTTGATTGATAGTGGCCTggcaacataaacaaacaatccACCAAGAGTCATCAGATTTTGATTCAATATTGCCTAATTCTGATTGGTCCACAAACTTTTTTCAGTACAAGTAGGCTACCTATACATTTGTAGTATTTCAGTACATTttctttccaccactgctgcacatactgtacattgaatggtccatgtttgtctctgcaAGCAGTTTCAGCCAGAACTGAGGCATCCATCCAAGTTCGACATCCAACCATCCGTCACGGTGATAAGTAGAGCCATGGCTGTCTGACATCCGTCACACATCTCAGTAGTGGGTAGAGAGCCTTCCAGAATATCTGATTAATCTTTCCTAAGCTGTCGTTTGAGTGATACCAGCAGGAGAGTAAGTGGCTCACAGCTCAAGCGGTGGTCCAGGGGTCCCAGTTTGAGCAGCTGCTTAGGTGTTTGATGGAAGGTGATGGCAGTTTATCACCTCCTGGAGCAGGGAGAAGGGCGAGATGCATCTAAAAAAGTGCTTAGTGCTGTTATCTCCACGGCATGCACTTTAAACATCAGGAGCAAAGTTCTCATAAACTGCTTCACTCCCCCTGCTATTGTTGTCGgacagatgagaaaaaaaagatgttctTGTATCAGGCGTTGTCAGGGGGGAGGTGGATGATGTGAGAGAATGTGGGCTTATTATAGAACGAGAAAGGGTTGTTTGTTGACAGCGAAAGAGAGAGGCTGTCGTGCATGTGAGGGAGAAAGGCGACTGATAGCCCCCAAGGTAGGTGTACACTTTGTTCATATGAAACAGATAAGCTCGCCTTTGTAGTCATGGCTACAAGGGGGGAGGACGGAGGAGGGGCTTTGTCAGTGACAAAATCCAAAGCTAGACATGTGGACCATGTTTGGAGAAGTCACAGACGTTCTGGGCAGGTCAGCCAAGGGTTTTGCTGCAGGAATTTCAGTGTCCCAGACGAAAGCTGCCGCCTGGTGTAAACACAGCGTGATATGGCGCTGTTTACCGTCTCTCCTGCGCTTTTATTGCATCTCATTCTCATGTTGTGCAAACAGAATCCACCGCCTCTTGCTTTATTGTTATCATGATCATAACCTTCATATTTAAGGAGTCCATTCTAATGCATATATGCTCACGTACAGAACATATATTTTGATGTCCATCTGTCTAATATGACTAGAATAAACATTGTCTCCACTGTAATCAATAGATCATAATGTGCCGTCAGAGCTAGCTGGGCTCCTCTTCATACGGCTTATGTCAAAGGGCTAAACTCCTTTTACGGAGTACACATGACATGTAAAGTTTATCAGAGATTACTTCAAATTTAATTTTTCTCTGGCTTCACTCTTGGGGGGCTGTTGCTGAGATTAATCTCACCAATCTTGTGCAGCCTTGTAGATGTGAAAACGCAGCAGCTTGTGCATGCTGGGAGAATTTTATCAGAGacgaaaaatatatatatatcgccaGATTGTACGGAGCAATTTAAAGTGCCTTATCCCTTATCCAGAGTAACATAAACAAATTGCTCTTTTATCCTAAAATCACTGTTGTATCtttagtgtgtctgtgctgaAAGTAGTTGGTGCTGCATTGTGCACATTAAAGAGCATGTTCAGcatttttaactttttggtTACAGATATTGTGTttctcagctctgagctcccATTACTATGATTTTCATCTTAACACAGCCACTGTCTGATTGCAGAGGCAACTGAAGCTTGGACTGAACAATCTAAAATCATCATCTCAATGCCTTTTTGAAGTAATTGATCAAAAACTATACAGCTGTGACATATTTCAATACTATCCTGGAGGCACAACGGGCTATTTTGGTTGATTTTCCATTTTTTCAATCTTTCAATAGCAACAGGCTTCCAAAGGACTCACTTAGACACAGCTTTGCGTGGTCCTGGaatatgtataaataatacattatattgtacattttcGATGACATTTAGtaaatttatttctttttattattgtacaaagtacaaattaaaatatgatCAGTGTACAGCCAGAGAGTTTTTCTTTTGGTTggaaatttaaaatgttatttaagaTCTATAAAGACGATTATTATGGGTTATGGAAGTGTTTCAAAGAGAATATGATTACAAGAGTAAAAGGTATGTGCATTTCTGGGGGCATGATTTGCTGAGAAATGGATTCCTGCTTTGCAAAATGAGCAACCAAACCAAACTTTTCAACTTCGGAGCAGCGTTCAATGGGATTTGAAGAGTAACTTGCAGCCAGAAaggagaaagggaaaaaaaaaaaaaaaagggcaaacCTGGAAACCTGGAGGAGGCAAAAAAGCTAAAACTAGTTTCCAGTGACCCAAAGGCCCAGAAGCAAGGGCTTCATTTTGATTTCACCTGTAAATGCATTAGGCCTCACACCTTGTGAAGAAGCTGTCGTCTGCTATCTTACCGGACACACTTTATAACTTTTGCAATTTTAACATCCTGGggaaaaggttttttttgtgtggagcAACCAATGGGTTGAGGGTTGAGCTATTTGACCCTATCTGAACTTCAAGGGTCACAGTTAACATgtggatttaaaacaaaatcagcaaacaaacaaaaaagaagaagaaaaaaaaaatctgtagcCTGCGGCAAGTGTTAAATGTACATACAaatgttcatttttcatttgctTATGTATGTAGATGTCCATTGTGTATTCACTCACTGTGGCTTGTGGCTTCTCTTGCAATaggaaaaataaattttacAATCTATTGTTTGCATTGTATATATCTATATGATAATAAATTATATGTAATTCGGATGTGGTACATTTGAAATGTACATACACGTCTTTAATAGCTACTATCTGAATGTTTCCTCCCCGAAAGAATCCCTCATTTAacacccccccct

Function

GO:

id name namespace
GO:0007213 G protein-coupled acetylcholine receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016907 G protein-coupled acetylcholine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638107.1 lncRNA upstream 16007 9934175 ~ 9936593 (+) True LOC120553125
TU307795 lncRNA upstream 84515 9867575 ~ 9868085 (+) True G226930
TU307786 lncRNA upstream 126075 9796473 ~ 9826525 (+) True G226921
TU307787 lncRNA upstream 145998 9806242 ~ 9806602 (+) True G226922
TU307781 lncRNA upstream 198484 9751944 ~ 9754116 (+) True G226918
TU308026 lncRNA downstream 508292 10538196 ~ 10538689 (+) True G227088
TU308047 lncRNA downstream 595542 10625446 ~ 10627982 (+) True G227107
TU308048 lncRNA downstream 598904 10628808 ~ 10630212 (+) True G227108
TU308058 lncRNA downstream 635805 10665709 ~ 10667280 (+) True G227116
TU308091 lncRNA downstream 676006 10705910 ~ 10709545 (+) True G227139
XM_039791883.1 mRNA upstream 272785 9673991 ~ 9679815 (+) True cd36
XM_039791669.1 mRNA upstream 678692 9268198 ~ 9273908 (+) True LOC120553346
XM_039791670.1 mRNA upstream 678692 9268198 ~ 9273908 (+) False LOC120553346
XM_039791672.1 mRNA upstream 678692 9269069 ~ 9273908 (+) False LOC120553346
XM_039792211.1 mRNA upstream 711254 9237226 ~ 9241346 (+) True ndufb2
XM_039791146.1 mRNA downstream 70792 10100696 ~ 10103605 (+) True LOC120553071
XM_039792487.1 mRNA downstream 75027 10104931 ~ 10107323 (+) False LOC120553783
XM_039792488.1 mRNA downstream 75307 10105211 ~ 10107801 (+) True LOC120553783
XM_039791566.1 mRNA downstream 78415 10108319 ~ 10116627 (+) True LOC120553300
XM_039791567.1 mRNA downstream 78415 10108319 ~ 10116627 (+) False LOC120553300
TU307644 other upstream 711251 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 779380 9134594 ~ 9173220 (+) True lhfpl3
TU307294 other upstream 1519903 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 2552201 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 2620341 7323070 ~ 7332259 (+) True amdhd1
unassigned_transcript_1481 other downstream 162422 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 164526 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1483 other downstream 165216 10195120 ~ 10195206 (+) True trnay-gua_59
TU308063 other downstream 667350 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 702165 10732069 ~ 10737503 (+) True G227141

Expression Profile