RNA id: XM_039791605.1


Basic Information

Item Value
RNA id XM_039791605.1
length 2000
RNA type mRNA
GC content 0.48
exon number 16
gene id hcls1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9089726 ~ 9095823 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTATTATTTAGCTACATCAACGCACGTTCATGTTACTGTACGCTAGATCCGCGTTCACTTGTCGTCCATCAGACTGTCACAACTCGAGTGAAGACCAGTCGTTGTAATATCCACTTAAACACATATATTACCGTGACAACTAAAAGATGTGGAAGTCAGTCGTGGGCCACAATGTGAGCATTAAGGTGGCTGCAGAGGGGGACGACTGGGAGACAGACCCCGACTTTGAGAATGATGTATCAGAGCAGGAGCAGAGATGGGGAGCAAAGACCATCGAGGGTTCAGGACGAAAAGAGCACATCAGTGTTGCAGAGCTCAGAAAAAATGTCGCTGTGGAGCACGAGCAGGGGAAGCAGAAGGATCAGACTCCCAAAGCGTCATACGGATATGGAGGGAAGTTTGGAGTCGAAAAAGACAGAATGGACAAGGTGGCTTTGGGGCACGACTATGTGGCACAAGTCGAGCAGCACTCCTCCCAGAAAGATGCGGCACAAGGGTTCGGCGGAAAATTTGGTGTTCAGAAAGACCGCGTCGACAAGACTGCCATGGGCTTTGAATACAAAGGAGAGGTGTCGCAACATGCATCTCAGAAAGATTACTCAAAGGGATTTGGAGGAAAGTACGGGGTGGAGAAGGAAAAAGTGGACAAGGCCGCTTTGGGGTACGACTATAAAGGCCAGACAGAGAAGCACCAGTCACAAAAAGACTATGCTAAGGGATTTGGAGGAAAGTACGGGGTGGAGAAGGAGAAGGTGGATAAAGCTGCTCTGGGGTACGACTATAAAGGAGAAACAGAGAAGCACCAGTCACAGAAAGATTACTCAAAGGGATTTGGGGGGAAGTTTGGTGTTGAGAAGGAGAAAGTGGATAAAGCTGCTTTGGGCTATGATTATAAGAGCGAGACGGAGAAACACCAGTCACAAAAAGATTATTCAGCAGGTTTTGGAGGTCGTTATGGAGTTCAAGCAGACCGCATGGATAAGAGTGCAGCCGGCTTCTCTGACATGGACTCCCCTACCTCTGCATATGAAAAGACACAACCATTAGAGGCctCAAGTGCAGGTGCAGGTGCAGGAAAACTTAAGGCACGTTTTGAGAACATGGCCAAAGCTTCTGATGAAGAGAACAAGAAGAAAGTCGAAGAAGAGAGAGCGAGGAGACAAGCCAGAGAGGGCAGAGAGCGAGAGGTGGCCAAACGCAGACAAGAGGAAGAAAgcagaagagaggaggaaattTGTCCACCACCTGTTCCAGACGTGGCTCCAGATGAGACTCCAGATGTGGAGTATGAAATGACACACCCAGAATTCCAACAAATGCCAGAGATACAAGAAATacctgaaccagaaccagagGAGGAACCAGAATACGACATGCCCCCGGACTTGCCTCCACGTTCGGACAATTTCTTCGAACCGGATGCTCCCCCGCTACCCGACAGGTCATTAGATGTGGACGAGGGTGAAGGAGAGTACGAGGAATTTCTTGAAGCGCCTCCTCCTGTGCCGACAGCAATCGATAACGACTACGAAGACCTGTCGAGTGGCCAGAGGGCAGTAGCAATTTATGACTACGTAGGAGAGGCGGATGACGAAATCTCCTTCAACCCAGACGACGTCATCACCAACATAGAGATGATTGACGAGGGCTGGTGGAAGGGACAGTGTCACGGACGCGTTGGTCTTTTCCCGGCTTCTTATGTTCAGCTGACGCAGTAAGCAACATGCTTAGGGAGGTTTTGCACAAGCGTCAGTTAAACAATCATGTATCTTAGGTGGTTCAACAGGGAGAATTCATTTTAGCACTGTATTTATAGAGAAATCACAGAACATTTGTGCCAAAATGGCTTCTGATTAGCgtatttcttttattgtgttaatatCTTGCTTCGGGTCTGTGGCAAAGAGTATCTTGACAGTATGACCGTATTAGGGGCAAGCAGTTACAGCTTTTATCTGTAATGAACCGATTGGAGTCAATAAAAATATTCCACAGACAA

Function

GO: NA

KEGG:

id description
K06106 CTTN, EMS1; cortactin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307611 lncRNA downstream 49869 9037771 ~ 9039857 (-) True G226800
TU307604 lncRNA downstream 60356 9029046 ~ 9029370 (-) True G226797
TU307592 lncRNA downstream 119828 8969389 ~ 8969898 (-) True G226787
TU307503 lncRNA downstream 166782 8918491 ~ 8922944 (-) True G226711
TU307457 lncRNA downstream 275332 8809420 ~ 8814394 (-) True dram1
TU307615 lncRNA upstream 20987 9116810 ~ 9119971 (-) True G226803
TU307780 lncRNA upstream 646181 9742004 ~ 9742560 (-) True G226917
TU307910 lncRNA upstream 1122263 10218086 ~ 10220450 (-) True G227019
TU307912 lncRNA upstream 1125133 10220956 ~ 10284085 (-) False G227020
TU307914 lncRNA upstream 1127671 10223494 ~ 10225897 (-) True G227021
XM_039791609.1 mRNA downstream 2593 9084081 ~ 9087133 (-) False pex26
XM_039791608.1 mRNA downstream 2593 9084081 ~ 9087133 (-) True pex26
XM_039791610.1 mRNA downstream 2611 9084081 ~ 9087115 (-) False pex26
XM_039791607.1 mRNA downstream 5777 9074627 ~ 9083949 (-) True usp18
XM_039792302.1 mRNA downstream 35426 9040038 ~ 9054300 (-) True LOC120553659
XM_039791345.1 mRNA upstream 701 9096524 ~ 9114986 (-) True golgb1
XM_039791816.1 mRNA upstream 24504 9120327 ~ 9134415 (-) False orc5
XM_039791815.1 mRNA upstream 24504 9120327 ~ 9132708 (-) False orc5
XM_039791814.1 mRNA upstream 24504 9120327 ~ 9132708 (-) False orc5
XM_039791813.1 mRNA upstream 24504 9120327 ~ 9132708 (-) True orc5
XR_005638147.1 other downstream 295816 8565242 ~ 8793910 (-) False ppfia2
XR_005638146.1 other downstream 334894 8572959 ~ 8754832 (-) False ppfia2
XR_005638142.1 other downstream 334896 8565242 ~ 8754830 (-) False ppfia2
XR_005638144.1 other downstream 334897 8565242 ~ 8754829 (-) False ppfia2
XR_005638143.1 other downstream 334897 8565242 ~ 8754829 (-) True ppfia2
unassigned_transcript_1484 other upstream 1099961 10195784 ~ 10195870 (-) True trnay-gua_60
unassigned_transcript_1485 other upstream 1100524 10196347 ~ 10196433 (-) True trnay-gua_61
TU308019 other upstream 1417671 10513494 ~ 10522962 (-) True G227082
TU308180 other upstream 1884375 10980198 ~ 10981259 (-) True G227197
XR_005638189.1 other upstream 2528186 11624009 ~ 11676832 (-) False pcloa

Expression Profile