RNA id: XM_039791612.1


Basic Information

Item Value
RNA id XM_039791612.1
length 5512
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC120553322
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14375636 ~ 14391277 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTATAAGTCACGCCCCCCACGGCGCGCCATCTGTAGAAGCCATGCCGTCTGTTTTAGCAAAACATTGACTACTTGAATAATTACTTTGACTACGCGAATTACTACCAGAATGGACGGAATGCTGAACTCTGAAAAGTGGACTGATGCGGAGGTGCAGGCGCTGCTGGCCATGTACGCCAACGAGGAGGTGCAGAGGGACCTGGAAGGATCCACAAGAAACATTAAAATCTTCGGGAAGATCTCCAGTGAGCTAGCGCAAATGGGAGTTTACCACACGGTCAAGCAGTGCAGAGAGAAGGTGAAGAAGCTGAAACAAGACTACAAGAAGATAAAGGACCACAACAACCAGGGCGGTGCGAATCGCAAAACGAGCAAGTGGTACGCCACACTGGACGGTATTCTTGGCCACCGTCCAGCATACTCTGGCAACGCCGCCAGGAAGGACTCTGCCACCGGGTTCTTGGAGACGATCGTCGGCTCCGAGTACACTCCACCGTCGGATGAGAGTCTTCAAGAAATGTGGGCGCGCCACACCGTTCCGTGGACGGTCAACGAGGTGCAGACTTTCCTCGGCATCATGGGTGAAGAGGAAATACAACAAGAGCTGGATGGATCAGCGAGGAATAAAGCGGTTTTTCAGCTCGTTTCTCGTCGCATGGCTGCCCACGGTTTTCATCGCACGTCCGAGCAATGCAggataaaaagtaaaaagctcCGGAGCGACTACAGGAGAATCAGGGACCACAACAGTCAGGGTGGTGTAAATAGGAAAAGCTGGAGATGGTTCGACATGATGGACGCCATCTACGGCCACAGGCAGGCGAGCATTGGAAGAGAGGGGGACATCGACTCGGCCACGGCTTTGCTGGAGTCCATGGTGCAGGCGCACGATTCCACCACTACGACTAACATTCCTGTAAGCTACAACATCACCATCATCCCCTGCCCTCCACCAGCCCAAACACCTTGCCCCACAGAGGACTCGCAAGACCCAGATTCCTACTCCATGCAAGTAGAAGATGTTGGCATCCCGTGTAACAGTACAACAGTGACTCTCTCTGCACTGGAAATGTCCGACAAAGATAAGGCCTTGCACTTCTGGTCAAGTGATGAGGTCCAAGCACTGTTGACACTTTGGGGAAATCCCGCTGTTCAAGAAGAGCTTCTCCTCAACGTGAGGAATAATAAAGTTTACACTTGCCTCAGTACTAAACTAGCGGCGCTTGGATTCAATAAGACACCACAGAAGTGCAGGGAGAAAATCAAAAAACTGAAGCAGGAGTACAAGAGAATCAAAAACAGTCAGCCCAACAGCAGCCGTAGAAGTGTATGGTTTGCCATCATGGATGACATCCTCAGTTCCACGGCTGCAGCACCAAGATGTTCAGAAACAACTGAGCCCTCGCTGCTCAGTCAGTCACAGTCTGCCCTGGATGTAGATACCGATGATGACACCCAGTGGTTGCCTGATGAAGTCCAAGTTCTGATGACCCTCTGGGCACAACCAAACATCCAGAAACAGCTTCTCAACACAGCAACAGTCGATCAGGTCTTTGTATACCTCAGCAGCGAACTCACGTTTGTGGGGTTCAACAAGACCCCACATCAGTGCCGTCTTAAAGTGAATAACCTTAAGGAGGAGTACAGGAGAATCAAGGAATTGGAACCGTACAGGGACGTTCGAAACGACTGGTTTGTTATTTTGGATGGCGTCCTTGGCCCTGGTGGAGAGACTTCTACAGAGGTGGATTCATCTGCTCCGCTGACGCAACCTAATTCACCAGAAGTCGAGCATGTGAATGATATGTCGCGGGCTGTTTGGACGTCAGATGAAATCAAAGTGCTGCTCACCCGATGGGCAGAGGACAGCATCCAGGAGCAGCTTAGATCAACTCAGAGAAACGAGAGAGTGTTCGCTCAGCTGAGCTCCGAGCTCGCCACTCAGGGCTTTGATAAAACCACCAGCCAATGCAGGTCCAAAATAAAATTGCTGAAACGAAAGTACAGAAAGACTAAGGAACAGAAGGAATCTAAAAGGACGAAAGGCAGATGGTTTGCCATCATGGATAAAATCCTTGGTCGTTGTAAACCAGTGTCTGAGACTGAACAAGAAGCTGAAGTCATGGATTCAGCCCCTACATTTCTACAGATATCACAGCAAGACCTTTCTGAAACAGTAGAAGACTTGGGTTGCCGCCTGTCCGTCTCCTCATTGTGTCTCCTGGTTCCAACCCTGCGTCTGATGTGTGCCTTTGCCTGGCGAGTGATCCAGTGTTGTAATGTCCTACATTATGGAAAGGTGGAGGAGCTGGTGAGGTTGGTGACGGAGCTGGCTCCAGAGTTGCTGACGCCCAGAGAGAGAGTGCAGCTCCTGCTCAGACTAAGGGCAAGGGTGGTGTTGGATTTGTGTCGCAGTGAGAGCACAGCTAACCTCGTGTATATCCAGCCCCACCTGACGGTCATTCAAAACCTAACAACGGGCTCCACTTGTGATCAGGAGGAATTGGAAAATTCTAAGTCAAACTTTGTGGAAGTTGTTCATACCCTGCTCGAGGACACGGAGAagagaaatgtgtttttcaaggAGGTCTTCCACATCCACTATGGCCAGCAGTATGAGGCCACATTGCACACATTGGTATGGAAATTCATCTCAAGACTGGATAATCTTTTGCCTGTACCAGATATCAAACAGACTGCTGAGTGGCTCGGCACGGCCCCCTCTGTCATGGAAGAATGTGGCCAGCTGGTTTTGGAACCAGAGCAGCTGAAGGCGCTACTGCACTTCCACCAGCAACAGTCAGGAAGCACAAACAAACGCTACTCTCAAACTCAGAATATGTTTTTGCCGAGGCTGTCTTTTCCTCACGAACCAAACTCGAGGCAACTCTCTTCAGAGCAACAGGCATCGTCTACAGGCGACACAGATGATGGACCGTCTGATTATAGCGAGGAAAACCAAAGTGATGATGAACTGGCTCTGGAGGACCGTAGCAAAGGAGATGAAGTCCTAGAGTTGACAGAAGAGTTGAAAGAAGAACAAAGCGATGACCTAACCGCAGCAAACTGCTCAAATTTAAACAATCATATGCCTTTAGGACTGCACACCTGCTCTTTGTGTCCCTACTCTGACGGCCAAGTGTCAGGTCTTCTGCAGCACATCAGAAAGGCCCATCTGAGTCCGGATCCCAGCCGACTGCAGTCCAAAGAACCTAGGACAGCCACTGTCCTTCAGAAAGTAGACCCTGAAACATGCACTCCTGAGACGCTGCCCTTCCACTGCGACAAGTGTGAGAAGAAGTACTCCACGAGGGCGTCTCTGAATGTGCACCGCCGGATTCACACGGGCGAGACGCCATATTTGTGTTCGCACTGTGGCCGGGGCTTTAGAACTTCAAATGGCCTCGATTTTCACGTTCGCATACACACGGGAGACCGGCGCTATAAATGTCCCATTTGTGGGAAGACTTCGATCCAGCACATGATGAGACACATGCGGATGCACAGAGGGGAAAAGAACTTCCTGTGTACAGAATGTGGGAAAgcttttctctcctctggggAGTTAAAGCTCCACACGAGGTCTCACACGGGCGAGCGCCCGTACACATGCAAAGACTGCGGGAGAGGTTTCACAGCAAAGTGCCTATTGACGGTCCACATGCGCCGTCATACAGGAGAGAGTCCTTATAGGTGTTCACTTTGTCCCAAATCCTTTAAGACTTCGAGAATGCGGAAAAGGCACATGATGATCCACTCAAACAACAAGTCTTTCCAGTGTTTAAAGTGCGGTAAAATCTTCAGGCATGAAGACACTTTTAAAATGCATGTTCAGACACACGATTGAAAGTAGTAGCTGgtgtttttatacaacaatTGTAAAATATTTGTATGTCATTCTGGTTTAAACAGTGCAACTTTCAGTATGGCCAAGcagtctgattttttttttttttattattatagatATTTCCATATTATCTGTAAGCCAGTACTGATCCTGCTTGTATATCAGCAAGGCCCTAATAATCAATTTAAATTTACATTTACTGCATAAAAATATAGTACCTCCCTTAATGCATGAAGGACCATTATTTTCTGAAAACTATACAAAGGCATTCCAAAAACATGGCACTTAGTGCACACTTATTATTAAGAGTTTGTGTGAGCCACAGAAGTTGTTGCTATCcagttgcatcatgggaattgtaGGATCTAGTGTTTTGGTGGTTTCGCTAAACTCTGAACTAAAAAGTCAGGATATCCCACTGCACAGATTTtgaataatcttttttttttttgtatgtttattgtgAGTCCCCTTAAGTTAGAGTTAATTAAAATGCATTGCTAAATCACTGgagtgctccttttttaaaggTTGCTGCTTGTTTGTCTCCCCAAAATACACAATGTCCTCCTGCCATATGTGCGACCATCCTGTGTCTTGTCCCACGGCAGGGGCAGCGTGTCAGGAAGGCCTATCAAGGGTTCTCCAACCAGAGCTCTTAGCAATAATGCCAACACAAAGCCAGAGCAGGCCACGTAGTGGTCCACCCACCGAGATAAGTAGAAGGTGCCAGAACAGGTGAACATACCATGTTGTCACGGCCAGTCCTGCCCCTATTATTCCACACAGGAGGATCGacacgcacacaagcacacacgcaAGCAGCAAATGCTCCCATAAGGGCAAAGATGCTGAAGGGCAGTTGGCAAGATCACACCAGACATTAAGCACAAATAATGCAGGGTGTAATTCTACAGTATAGTGGCCACAGAGAACACAGTTCTGTTTGTGTTATTTTCACATAAATGCACAATTCTAACATTGTAGACTCATGACAGCTACTCCTTTTGGCCTAGGTTTCTCCTACTCCTAGTACTACCTGGTTCTAGTATGACAGAAATGCTTATTCCAAGATGGCAAAGACAATGACAAGATAGTTAAATCTAAGTACTGCCAGATGGTGCTGCTGCCCCAGTGATGAGTGACGGGCTCCAGCATAGCAGGTGATCTTATTTATCACATAAATTACAGTATTTCCCCAACCACAAAATGATGTCATTTACCCTTTTTGCATAAACGTATATTGTTACCATCATACTCTCTGCACGGGATTTACTCCTCACTGCCACTGACCCCGACCTCTTACAGTGTCACTTCACTCGCCTCTGGTTtgacccctccccaccccccggATCTTATAGAGCCAGCCACACTGATTCAGAAAGCCAGCCCACAGTGAGCTCACTGGGTAAGTCTGCTGCTGTTGACATCCATATGACTACATGGGATTGTTGAGGGTGCTTAGTCATTCAAGACATTTGCTGTAATGACTTGACCCTGTTTGAAAAGGAGCACAGCTGAATGGAGCTCAATGAATAGAGGAACATATGGGCTAACGTAGTGCTGGAAATATGAGAAGCATGAATGACATGGAAAACAAATGACTGTTAGTGTATGTTATGTTGAGGTTCACATGAATAAATACcttaaaatacaaatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309114 lncRNA downstream 143830 14231543 ~ 14231806 (-) True G227814
XR_005638083.1 lncRNA downstream 156038 14178745 ~ 14219598 (-) True LOC120553016
TU309112 lncRNA downstream 195130 14178772 ~ 14180506 (-) False LOC120553016
TU309104 lncRNA downstream 232377 14140179 ~ 14143259 (-) True G227804
TU309070 lncRNA downstream 425755 13949541 ~ 13949881 (-) True G227784
TU309249 lncRNA upstream 32961 14424237 ~ 14426492 (-) False waslb
TU309250 lncRNA upstream 34842 14426118 ~ 14426492 (-) False waslb
TU309275 lncRNA upstream 242834 14634110 ~ 14635577 (-) False grm8a
TU309356 lncRNA upstream 244379 14635655 ~ 14643449 (-) False grm8a
TU309360 lncRNA upstream 378722 14769998 ~ 14770247 (-) True G228019
XM_039791288.1 mRNA downstream 9205 14348746 ~ 14366431 (-) True ano6
XM_039791289.1 mRNA downstream 14056 14348746 ~ 14361580 (-) False ano6
XM_039791291.1 mRNA downstream 27565 14339398 ~ 14348071 (-) True pwp1
XM_039791293.1 mRNA downstream 37189 14334852 ~ 14338447 (-) True mrpl42
XM_039791292.1 mRNA downstream 41697 14326097 ~ 14333939 (-) True ube2nb
XM_039791673.1 mRNA upstream 1116 14392392 ~ 14397779 (-) True LOC120553347
XM_039791677.1 mRNA upstream 9951 14401227 ~ 14406493 (-) True LOC120553349
XM_039791691.1 mRNA upstream 34791 14426067 ~ 14450589 (-) True waslb
XM_039791825.1 mRNA upstream 74479 14465755 ~ 14468407 (-) True LOC120553439
XM_039791824.1 mRNA upstream 143602 14534878 ~ 14553865 (-) True gpr37b
unassigned_transcript_1491 other downstream 565957 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 716364 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 845858 13520265 ~ 13529778 (-) False LOC120553470
TU308500 other downstream 2087482 12284926 ~ 12288154 (-) True G227429
XR_005638137.1 other downstream 2526695 11838944 ~ 11848941 (-) False cracr2ab
TU309376 other upstream 668727 15060003 ~ 15061429 (-) False znf800b
TU309380 other upstream 670987 15062263 ~ 15088329 (-) False znf800b
TU309610 other upstream 1379962 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 2357566 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 2903846 17295122 ~ 17302198 (-) True G228465

Expression Profile