RNA id: XM_039791644.1



Basic Information


Item Value
RNA id XM_039791644.1
length 1467
RNA type mRNA
GC content 0.52
exon number 6
gene id ccdc107
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23289578 ~ 23299318 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


acgCCCTTCCCGGAAGTCGTGGTCATGTTATTGCAGCGGATCAGAGCGCAGCTGTTTTGGGGCAGAACAGCCTGAGTCTTTAAGTCTCAGATACTGTATGTTAGCCTGTATGCCCACCGTCTCCTCCCTGTCTCTCGTCTCTCTAGCCCCATCTCTTTGCGGCTTGGCGTTGCTTCCTCTTCGGCGGCTGTCTCGTGCCGTTTTTGTGTGTTCGCGAGAGGATGGTTTTGTCAACATCCCAACAAGTCGCCATGGCTTTCACGGCTGTGCTTTTCACGTTCGTCGTGCTGCCCAGGATGTTTGGCGTCGGCGGCGGGACCGGGGCGAAGGAAACTAGGTTTGACCCTCGCTACACCCGAAAAGCAGCAGGTCTGGGCCCGGGCGCAGTGAGAGGTCAGCCCATCGCCAACGCCCCCGGTACGCCTCAGACCCCCGAGAACATGCTGCAGATGAAGAAGCTGATGGAGCAGGAGCTGAAGAGTGACAAGttcaaaaccaacaacaacaagggCTACGTGTTCACACTGATGCCTCTCTACGCCATCGGAGTTGGAGTGTTTGCAGCCTACAAGTTTCTGAAGATCAAGTCTACAGATGACCAGGCACAGAAGGCCAAATTTGCAAAAGGAGCCAAAAAATCAGTGGAAGCAGAGAACCAGTTGAACGAGCTGGAGCAGAGGCTAGCGCAGACGGAGAGAATGCTCAACTCCATCCTCACACAGCTGGACCCGCTCACTAACTGTGTGAAGTCGGTGGCCCAGGATCAAAAGAACGAGATCATGTCTCAACTCCAGACCATCCGGCACCTGATGAAGAAGAGAGGAATGGACTGTCCACCCCTCAACATCAACGAGGCATCCTGCGAGCGTAACCTTGAGGACCTCATAGAGAAACTGGAAGCCAACGACACCTCGGCAGCCAAAGCTTCCCTGGTGGACAAGCGGGCCTCTCAAGGCGCAGCAGAGGCGTCAGAAAAAGTCTACCAGAAGCATTTGGAAGCTAAAGATGAAGCCGCAACGGAGGGTGAAGAGATGAAGCAGCTCATACCAGAGGAATCAGACGGGGGAACAGAGGAAGAAGGGAAGGCGGAGGaagcggaggaggaggacggtaaagaagaagaagaagaagaagaagaagaggaagaagggtTGGAGGGCTCTGAGCTCATGCCTTCACTAGAGGACTCATATGAGTCAAACATTGAGGAGGTCGGAGCTGAACAGCGCGCGCCCGGCCTCAGGCGACGCAACAGGCCCGACTAAACTCACCGCAGGACAGAAATGTGacagattattattaatatttattacCTGAAAAGGCTGTCTACATATTCAccaaaaacatatattgtactCATAAGAAACTATAACCTCCTAAGGAAAGCTCCCTAACAGCAAACGcacacactaccggtcaaaagtttggggtcacttagaaatttccattccactccattatagacgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005638073.1 lncRNA upstream 31718 23232498 ~ 23257861 (+) True LOC120552982
TU311580 lncRNA upstream 81379 23207076 ~ 23208200 (+) True G229676
TU311565 lncRNA upstream 101807 23149910 ~ 23187772 (+) True G229668
TU311576 lncRNA upstream 110627 23177956 ~ 23178952 (+) True G229672
TU311564 lncRNA upstream 140165 23148906 ~ 23149414 (+) True G229667
TU311602 lncRNA downstream 137248 23436565 ~ 23440540 (+) False kcnc2
TU311754 lncRNA downstream 280404 23579721 ~ 23585499 (+) False G229821
TU311755 lncRNA downstream 280404 23579721 ~ 23585499 (+) True G229821
TU311778 lncRNA downstream 368386 23667703 ~ 23679308 (+) True G229841
TU311911 lncRNA downstream 616494 23915811 ~ 23916388 (+) True G229938
XM_039791992.1 mRNA upstream 83101 23192726 ~ 23206478 (+) True krr1
XM_039792453.1 mRNA upstream 240985 23021415 ~ 23048594 (+) True LOC120553757
XM_039791092.1 mRNA upstream 322614 22956704 ~ 22966965 (+) True LOC120553035
XM_039791089.1 mRNA upstream 372002 22892813 ~ 22917577 (+) False LOC120553032
XM_039791648.1 mRNA downstream 16104 23315421 ~ 23440663 (+) False kcnc2
XM_039791649.1 mRNA downstream 16105 23315422 ~ 23440663 (+) False kcnc2
XM_039791650.1 mRNA downstream 16105 23315422 ~ 23440663 (+) False kcnc2
XM_039791646.1 mRNA downstream 16106 23315423 ~ 23440663 (+) True kcnc2
XM_039791655.1 mRNA downstream 232941 23532258 ~ 23562219 (+) True pmpcb
XR_005638197.1 other upstream 546400 22739717 ~ 22743179 (+) True phlda1
TU311231 other upstream 1421282 21867201 ~ 21868297 (+) True G229428
TU311225 other upstream 1430370 21857983 ~ 21859209 (+) True G229422
TU311228 other upstream 1438978 21849211 ~ 21850601 (+) True G229425
TU311226 other upstream 1442559 21837922 ~ 21847020 (+) True G229423
XR_005638156.1 other downstream 16106 23315423 ~ 23440663 (+) False kcnc2
XR_005638155.1 other downstream 16106 23315423 ~ 23438926 (+) False kcnc2
XR_005638157.1 other downstream 16106 23315423 ~ 23438184 (+) False kcnc2
TU311873 other downstream 533714 23833031 ~ 23848624 (+) True adm2a
TU311874 other downstream 533714 23833031 ~ 23848624 (+) False adm2a

Expression Profile