RNA id: XM_039791652.1


Basic Information

Item Value
RNA id XM_039791652.1
length 3303
RNA type mRNA
GC content 0.49
exon number 18
gene id slc26a5
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23594352 ~ 23617076 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACGCCTGTTTTTGCAGACCGGAAGATGAAAAGGACTTTAACTAGAGTATTAATCCTTTCAACATACACCGTCTGTGTATCGTAACAGGTTGCTGCTGTCTGCTTTCCGCGAAGGACGTTAATCATGCGTTTCCGTTGTTAAACATTAACTCAAGAGGTCAGTTTAACCATAAATTTATATCATCCTTAAGCCGAGAGCAGCATCCCCACAGGAGCTGGAGTACGGAGACAGAGCAAGTGCAGACAGATTAAAGGAATGAAGATGTACCGGCCAGGACAATGACGGAGAAGATAAAGTGGGAGAGCTAAACAACACCGGAGCGACCCAAACTCTGACTTCGTACGATCAGTCCTCCTGCCTCTGTCATGGAGCAGGATGCTGTAGCAGCTGTGGAGGATGCAGACTCCCAGCTGATGTACAGGATAGAGCGCCCGGTCTACGATGAAGCCCTCATCCGGTCGCAGCTTCTCAAGCACAAAGAAAACTCCACTACCCTCGGACAGAGGCTAGCACACCAGTTCCGGTGTTCATCAAAGAAGGCTAAGGCGGCCGCTTTGAGCTTTCTGCCTATTCTGACATGGCTGCCATCTTATCCAGTCAAGCAGTACCTGTTTTCTGATGTGGTCTCAGGTCTCAGCACAGGAGTTGTGCAGCTCCCTCAAGGTCTAGCCTATGCTATGCTGGCTGCTGTGCCTCCAGTTTATGGTCTGTACTCCTCATTCTACCCCGTCCTGCTCTACACCTTCTTTGGAACATCCAGACACATCTCCATAGGCACCTTTGCCGTGATAAGTCTGATGATCGGGAGTGTTGCAGTGAGGGAGGccccagactccatgttttACGTCCTGCCTGCCAACGGATCCAACATGTCCGCCGTCCTGGACGTGGAGGCTCGTGATGCCAGGAGGGTGCAGGTGGCCGTTGTGCTCACAACCCTGGTGGGAATCATCCAGTTTGTGCTAGGTCTTCTCAGGTTTGGTTTTGTGGCGATCTACCTCACAGAGCCCCTGGTGCGAGGCTTCACTACAGCAGCATCGGTGCACGTTGTTATCTCTCAGCTGAAGTACCTGCTGGGGGTGAAAACACAGCGTTTCAGTGGGCCCCTCTCTGCTATTTATAGCGTCAAGGCGGTACTCTATGACATCACAAGCACCAATGTCTCCACTCTCATCCTGGGCCTCGTGTGCTTCATCTTCCTGTTCGTGATCAAAGACCTCAACGAGCGCTTCAAGAAGAAACTGCCCATTCCCATCCCTGGAGAGATTATCGTGGTCATTGTGTCTACCAGCGTCTCTTATGGCATGTCCTTATCAGACAACTACAATGTGGACGTGGTTGGGAAGATACCAACCGGGCTTCTCCCTCCTACGGCCCCGGAGTTCTCTCTGTTACCCAGTTTGGTCACGGACTCCTTTGCTGTAGCCATTGTAGGATTCTCAATGGGCATCTCACTTGCCAAGACCTTTGCCCTGAAGCACGGCTACAGCGTGGATGGCAACCAGGAGCTGATTGCCCTCGGCCTGTGTAACTTCATCAGCTCTTTCTTCCAAACCTTCGCCATCACTTGCTCCATGTCGAGGAGTCTGGTGCAGGAGAGCACTGGTGGAAAAACCCAGatAGCAGGACTGCTCGGGTCTCTCATGGTGCTGTTAGTGGTGGTGGCCATTGGTTTTGTCTTCCAGCCGCTCCCTCAGACTGCGCTGGCTGCCATCATCATGGTGAACCTGTTGGGGATGTTCAAACAGTTCCGAGACATTCCTACTCTGTGGAGGAACAGCAAGATCGAACTGGCCATCTGGCTTGTGGCCTTCGTAGCATCTGTGCTGTTGGGACTGGATTATGGCCTCCTGGCGGCCATCGCATTCGCCATACTAACGGTCATTTACAGAACACAGAGCCCTGAAAGTGCCATCCTGGGTCATGTTCCCGGCACGGAGCTGTACTGTGATGTGGATGAGTATGAAGAGGTGGCTGAATATGAGGGGATTAAGATTTTCCACTATAACTCTTCAATCTACTTCGCCAACAGTGATCTTTATGTGAACGCCCTCAAGGAGAAGACGGGAGTAAATCCCGAGCACTTGCAAGCTGCCCGgaaagcccaaaaaaaacagaaagagaaggCAAACGGCAACCACAGCTTTCCAATGAAGATGATGTCTGCCCAGGAGCAGGGAGTGACGCATGAGGTTTTGTCCTATAACAACGCGGAGAAGGAGCAGGGGAACGGCCAGTTGGGGGACAGACACAGCGAGTCAGTCTCAGAGGAGGCTGTCTTCCTTGAACCTCTCAGCACCGTCCACTCCATCATCCTGGACTGGACCCCTGCCAGCTTCATCGACTCTGTGGGAGCCAAAGCCATCAAACAGGTTATCAAGGAATACGCAGCTGTGGATGTTCGAGTGGTGATAGCCGGCTGCAGCAGAAGCCTAATGTCTGAGCTGGACACCTTACAGTTTTTCACTGGGGTCACGACCCCAGAGATGGTGTTCCCCACCGTCCATGATGCAGTACTGCGCTGTCAGCACTCAAAGGGCAGCTATGGAACAACCTGACTGGAGAAGACCCCTGAATCACAGCAGCAAGGTCTTGCCTTGGGACAGATTTGGGAGGTCCTCCACACAACTGTACTGTAGGTGCGATTACCTTTTGATGCTTCCGCATCACAGTAGGGATGAACCGAGCAATCATTCATATTGAATAGTGTTTGTAGAACAGCTTTTCCCTCTCATAAAGCACACAAGAGTATGACAACCTTGTGAACTTAAGGTGGCCAGCGCAGTGAGTGAGTGGGCCGTTTTATGAGGCTTTTATTATCCAATCAGAAATGCAGGATATATTCTAGCTGACATTCTTACAGCCATATGTCTGTTTAGAGTTGCACTTTTTTTGTAGTTGCATTGAAGTTCTTACTGCTTTGCTGGAATAAGTACTTTCACAGTAAGCTGACCTTGTTAGAATGTTATAGTTTTTGGTATAAATGTATGAAAACTAAAACTGCCTCAATATCCTGTTGGCATCACTGTTTGTTATTGAGAAGTTTTGTTTTAAGctgtatgtttgtctgtgtatttAAACCAGCGAAAGCACTATCATTCGTCAATTTGCAGTACCTGCACTGCGTTTTCAGTCTGAGTGCAACACTAATATTGTacaagtgttttcctatttaagaaaaaaaagaagctgtagTTGTGCTGTAATTGTGGAACACAAGATGCCTTAAAAGTTACAATGTGGTTATTTTacaaaacattttacagactCAAATCTGgaataaagtttatttttaagtgaa

Function

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0019532 oxalate transport biological_process
GO:1902358 sulfate transmembrane transport biological_process
GO:0006821 chloride transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019531 oxalate transmembrane transporter activity molecular_function
GO:0015301 anion molecular_function
GO:0008271 secondary active sulfate transmembrane transporter activity molecular_function

KEGG:

id description
K14703 SLC26A5, PRES; solute carrier family 26, member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311811 lncRNA downstream 34010 23538248 ~ 23560342 (-) True G229872
TU311805 lncRNA downstream 66813 23527105 ~ 23527539 (-) True G229867
TU311733 lncRNA downstream 180594 23413116 ~ 23413758 (-) True G229802
TU311705 lncRNA downstream 281266 23298709 ~ 23313086 (-) True G229774
TU311715 lncRNA downstream 307456 23285567 ~ 23286896 (-) True G229784
XR_005638123.1 lncRNA upstream 6505 23623580 ~ 23641504 (-) True LOC120553168
XR_005638124.1 lncRNA upstream 73444 23690519 ~ 23711804 (-) False LOC120553170
TU311853 lncRNA upstream 85629 23702704 ~ 23707197 (-) True G229908
TU311856 lncRNA upstream 96381 23713456 ~ 23713677 (-) True G229909
TU311901 lncRNA upstream 241985 23859060 ~ 23859758 (-) False LOC120553046
XM_039791654.1 mRNA downstream 5592 23562160 ~ 23588760 (-) True dnajc2
XM_039791651.1 mRNA downstream 62545 23529757 ~ 23531807 (-) True phax
XM_039791006.1 mRNA downstream 318809 23229083 ~ 23275543 (-) True cmah
XM_039791993.1 mRNA downstream 383855 23205434 ~ 23210497 (-) False glipr1a
XM_039792153.1 mRNA downstream 407741 23177186 ~ 23186611 (-) False LOC120553577
XM_039791277.1 mRNA upstream 60093 23677168 ~ 23684068 (-) True cbll1
XM_039791276.1 mRNA upstream 60093 23677168 ~ 23684061 (-) False cbll1
XM_039791559.1 mRNA upstream 101264 23718339 ~ 23809346 (-) True sbf1
XM_039791102.1 mRNA upstream 241144 23858219 ~ 23863974 (-) True LOC120553046
XM_039791068.1 mRNA upstream 251081 23868156 ~ 23885592 (-) True glt8d2
TU311637 other downstream 354779 23104760 ~ 23239573 (-) True G229716
TU311319 other downstream 1783255 21771136 ~ 21811097 (-) False LOC120553090
TU311312 other downstream 1783321 21771088 ~ 21811031 (-) False LOC120553090
XR_005638087.1 other downstream 2448819 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 2636132 20957657 ~ 20958220 (-) True G229199
TU311825 other upstream 74946 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 82622 23699697 ~ 23700198 (-) True G229907
TU311926 other upstream 291481 23908556 ~ 23914692 (-) True G229950
TU311924 other upstream 295026 23912101 ~ 23914692 (-) False G229950
unassigned_transcript_1528 other upstream 959875 24576950 ~ 24577021 (-) True trnap-agg_20

Expression Profile