RNA id: XM_039791654.1


Basic Information

Item Value
RNA id XM_039791654.1
length 2079
RNA type mRNA
GC content 0.52
exon number 16
gene id dnajc2
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23562160 ~ 23588760 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAGAGCACAGCCGTTTTCGGCACTCTGAAGGAAGGGAGGCCCATGTGGTATGTTAATGATCGGGCCACAGTCTTCAGCACATCAGGAAGCTTTCACTTGATCATTTCGGCACCTGAATGTTCGCGTAGCCCATTTTTCTAAGATGTTGTTAGAAGCGCTGGACGGTGATGAGACAGTTGTCTTTACAGCCGCTGCCGCCTCTGTGCAGATCCAGGTGGAGCCTGTTGGTCGATGGTTCGAGGCCTACGTGAGGAGGAGGAACCGGAATGCATCCGTCTCCTTCCAGGagttggaggaagaagaggagtcCTCAGAGGAGTCGGAGGATGAAGACCTTCAGCTGGAGGAGTACCCGATGCTGCGAACACTTGACCCCAAAGACTGGAAGAATCAAGATCACTATGCTGTCCTGGGACTGCCGCACTTGAGGTACAAAGCCACACAAAAACAGATCAAAGCTGCCCACAAGGGGATTGTGTTGAAGCACCATCCTGACAAGAGGAAAGCTGCAGGAGAGCAGATTGTAGAGGGAGACAATGACTACTTTACCTGTATAACTAAAGCTATAGAAATCCTGTCGGACCCTGTGAAGAGGAGAGCCTTCGACAGCGTAGACCCTACCTTTGACAACAACGTGCCTTCAAAGAGCGAAGGCAAGGAAAACTTTACGGAGGTGTTTTCTTCCGTTTTCGAGAGAAATGCCAGATGGTCTTCCAAAAAGCACGTCCCCTTACTTGGAACCATGGAGTCCTCCTTCGAAGAAGTCGACAATTTTTACTCTTTTTGGTACAACTTTGATTCATGGAGGGAATTCTCATACCTGGATgaagaagagaaggaaaagGCCGAGTGTCGAGATGAGAGGAGATGGATTGAAAAGCAGAATCGAGCCTCCAGAGCtcagaggaagaaggaggagatGAACAGAATACGAACACTAGTTGATACTGCCTACAGCTGTGACCCTAGAATAAAGAAattcaaagaagaagaaaaagccaGGAAGGAGTCTGAGAAGAAGGCTAAAGTCGAAGCcaagaagagagagcaggaagagAAGGAGCGAGCCCGGCAGGCTGAGCTGGAGGCCGCTCGATTGGCGAAGGcgaaggaggaagaagaggccaAGCAGCTAGCCCAGCAGGccaagaaagagaaggagatcCAAAAGAAAGCCATCAAGAAGGAGAGGCAGAAACTCAGGACTACCTGCAAGAACTGGAATTACTTTGCTGACGACGAGGCCGACAGCGTGAAAATGATGGAGGAAGTGGAGAAGCTCTGCGATCGCCTGGAGCTGACGAGCCTGCAGTCGCTGAATGAAATCCTGGCCTCAGGCTCCAAAGAGGATAGCAAGGTAGCTGTGGAGAAGCAGGTGCAGGAGGTGAACGCCCAGCtgcagagggagaaggaggcCGAGGTCCAGATGAGGCAGGCGGCCCGCGGCGCCGAGCAGGccagcggaggaggaggaggagggggggggaagggcTGGAACGAGGAGGACCTCCAGCTGCTCATCAAAGCTGTCAACCTGTTCCCTGCTGGGACCAACGCCAGATGGGAAGTTATCGCCAACTATATGAACCTACACTCCACCAGCGGCACAAAGAGGACGGCCAAAGACGTCATCAACAAAGCCAAGAATCTACAACGGCTAGATCCAGTACAGAAAGACGAGATAAACAGGAAAGCCTTTGAGAAGTTCAAGAAGGAACACGGTGCAGTGGCGCCCACCATAGACAACGCTGTGCCCTCAGAGAGGTTTGACGGCTCCGGTAGCACTGCCTCCTGGACCACCGAGGAACAGAAGCTTCTGGAACAAGCCCTGAAGACCTACCCGGTCAGCACACCCGAGCGCTGGGAGAAGATCGCTGCGGCCGTGCCGGGACGCAGCAAGAAAGACTGTATGAAGAGGTACAAGGAGCTGGTGGAGATGGTCAAAGCCAAGAAAGCCGCACAGGAAAACGTCGCGGGcaagagtaaaaaatgacaagaAATCACAAACGATAGCATCTGTTATTTTAACATTGTTGTGTCGgtctttattttgtattaaagAAGATACGTAAATCCA

Function

GO: NA

KEGG:

id description
K09522 DNAJC2; DnaJ homolog subfamily C member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311811 lncRNA downstream 1818 23538248 ~ 23560342 (-) True G229872
TU311805 lncRNA downstream 34621 23527105 ~ 23527539 (-) True G229867
TU311733 lncRNA downstream 148402 23413116 ~ 23413758 (-) True G229802
TU311705 lncRNA downstream 249074 23298709 ~ 23313086 (-) True G229774
TU311715 lncRNA downstream 275264 23285567 ~ 23286896 (-) True G229784
XR_005638123.1 lncRNA upstream 34820 23623580 ~ 23641504 (-) True LOC120553168
XR_005638124.1 lncRNA upstream 101759 23690519 ~ 23711804 (-) False LOC120553170
TU311853 lncRNA upstream 113944 23702704 ~ 23707197 (-) True G229908
TU311856 lncRNA upstream 124696 23713456 ~ 23713677 (-) True G229909
TU311901 lncRNA upstream 270300 23859060 ~ 23859758 (-) False LOC120553046
XM_039791651.1 mRNA downstream 30353 23529757 ~ 23531807 (-) True phax
XM_039791006.1 mRNA downstream 286617 23229083 ~ 23275543 (-) True cmah
XM_039791993.1 mRNA downstream 351663 23205434 ~ 23210497 (-) False glipr1a
XM_039792151.1 mRNA downstream 374398 23177186 ~ 23187762 (-) False LOC120553577
XM_039791653.1 mRNA upstream 5592 23594352 ~ 23617076 (-) False slc26a5
XM_039791652.1 mRNA upstream 5592 23594352 ~ 23617075 (-) True slc26a5
XM_039791277.1 mRNA upstream 88408 23677168 ~ 23684068 (-) True cbll1
XM_039791276.1 mRNA upstream 88408 23677168 ~ 23684061 (-) False cbll1
XM_039791559.1 mRNA upstream 129579 23718339 ~ 23809346 (-) True sbf1
TU311637 other downstream 322587 23104760 ~ 23239573 (-) True G229716
TU311319 other downstream 1751063 21771136 ~ 21811097 (-) False LOC120553090
TU311312 other downstream 1751129 21771088 ~ 21811031 (-) False LOC120553090
XR_005638087.1 other downstream 2416627 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 2603940 20957657 ~ 20958220 (-) True G229199
TU311825 other upstream 103261 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 110937 23699697 ~ 23700198 (-) True G229907
TU311926 other upstream 319796 23908556 ~ 23914692 (-) True G229950
TU311924 other upstream 323341 23912101 ~ 23914692 (-) False G229950
unassigned_transcript_1528 other upstream 988190 24576950 ~ 24577021 (-) True trnap-agg_20

Expression Profile