RNA id: XM_039791672.1


Basic Information

Item Value
RNA id XM_039791672.1
length 1976
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC120553346
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9268198 ~ 9273908 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAACCTGAAGATGAGGCGTCTGTCACGGAGGAAAGCCCTGAGTTTGGTGAGGGAGCTGGACGCTTTCCCCAAAGTGTCAGACAGCTACGTGGAGACCTCAGCCTCAGGAGGAACAGCTACGCAGTGTTCTGAGCAGCCTGGATGAAAGGCAGCAGCTGATACAACAATCATAACCACGAGAGACTTGAGACATAACTTGGACTCGAGTTGAAAgacttTGTCGCTGATAGCTTTTGGTGCCATGGCTCTTCTGGCTATTTTAGAGTTCTTTGTTTATAGAGACACTTGGATGAAGTATGAATATGAAGTTGACAAGGATTTTACCAGTAAATTGAGAATAAACATTGACATTACAGTCGCCATGAAATGCCAGCATGTTGGAGCAGATATTCTGGACCTGGCGGAGACCATGATCACATCCAGTGGCCTCCAGTACGAACCGGTTATTTTTGAACTAACTCCACGACAGAGACTGTGGCAAAGGACATTGCATCTCATACAGAACAGGCTGAGAGAGGAACACGCTCTTCAGGAAATCCTCTACAAAACTCTCCTGAAAGGAGGTCCCACTGCCCTGCCGCCACGggaggATGCCCCTATGGAGCCGCTCAAGGCTTGCAGGATACACGGGCATGTCTACGTCAATAAGGTAGCAGGAAACCTACACATCACTGTGGGAAAGCCCATTCACCATCCTCAGGGTCATGCCCATATCGCAGCTTTTGTGAGCCACGAGACGTACAACTTCTCCCATCGAATAGACCATTTATCTTTTGGGGAAGAGATACCGGGCATCATCAATCCTCTGGACGGCACAGAGAAAATCACTTATAACAATAACCAGATGTTCCAGTACTTCATCACAGTGGTTCCAACCAGACTGAACACATACAAGAtatctgcagacacacaccagTTTTCTGTGACTGAGCGGGAGAGAGTGATAAACCATGCAGCGGGCAGTCACGGCGTTTCCGGCATCTTTGTCAAGTACGACACCAGCTCTCTGATGGTGACAGTCAGCGAGCAGCATATGCCACTGTGGCAGTTCCTGGTGCGACTGTGCGGTATTATCGGGGGTATATTCTCCACGACAGGCATGCTCCATGGGCTTGTTGGCTTCTGTTTTGATGCCATCTGCTGTCGCCTCAAACTTGGAGTCTACAGGCTCAGAGAGGACGTGCAGCTACACAACCAGATGAACAATCTAAACAATCACCAGACTCCTTTGTTGGCTGACAATGGCCCTCAGGACTAGCAGTTTTTCAGCGACCAGGCTTTTGGTCATCGCCAAACGTCATCAATTTGTCATTAAATTGTGTTTATTCTACTGAAGGTAAAGCTGTCTGTTAAACACTGTAAACTTGCAAATAGTAAGTTCACATCAGATTGTTGCACTTCAGGAAATGTGCTGCCTGTGACTGCACttatacatgtgttgtttgaaaGATTTCCTTTCTGTGATGGGGTTTGTACCTTTAGAAATGTGGTAGGCTTTCTGTTCCACATGCTGTATAGCACATACAGCTGATTGTTTGTACCATTGTCcattaaaaagtttaaatatcCACAAATTCAAAAATACAAGTGAGGATTTGTTTCAAAGGATTACTGtgtgtaaaacatttaaatctTCAGTTAAGTCACAAAAAGATGTGGATGGTCTTCAAATACTCTAGTCAAGTTTGGAGAGGTTGACTGCACTCATTTAGTATTGTGTCATCCCAATCTTTGTAATAGCGTGCAATTATCTCTATGCAGTTGAAATGCAGGCATTTTTTAAAACCCTATATCAAAAAGGCCAAAAGAATGAGTTTTAATGTGACTGGTAATTTTGAGGTTTGGTAAAGAAACTCTATGGTGAggtagaaataaagttgaatgGGCTGCAGCACACTTGCACTTTCAAGTTTTGCCAAGCAGATTGAACAGGGAATAAAAGGTGGTCAAACATTTTGTAAATGACACCAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307627 lncRNA upstream 64618 9179139 ~ 9204451 (+) True G226810
TU307553 lncRNA upstream 229243 9037773 ~ 9039826 (+) True G226755
TU307545 lncRNA upstream 252794 9016073 ~ 9016275 (+) True G226748
TU307544 lncRNA upstream 253168 9015615 ~ 9015901 (+) True G226747
TU307511 lncRNA upstream 255423 9012843 ~ 9013646 (+) True G226717
TU307747 lncRNA downstream 377339 9651247 ~ 9654254 (+) True G226885
TU307781 lncRNA downstream 478036 9751944 ~ 9754116 (+) True G226918
TU307786 lncRNA downstream 522565 9796473 ~ 9826525 (+) True G226921
TU307787 lncRNA downstream 532334 9806242 ~ 9806602 (+) True G226922
TU307795 lncRNA downstream 593667 9867575 ~ 9868085 (+) True G226930
XM_039792211.1 mRNA upstream 27723 9237226 ~ 9241346 (+) True ndufb2
XM_039791817.1 mRNA upstream 98689 9134594 ~ 9170380 (+) False lhfpl3
XM_039791818.1 mRNA upstream 149084 9116805 ~ 9119985 (+) True guca1a
XM_039791611.1 mRNA upstream 179521 9087173 ~ 9089548 (+) True llph
XM_039792055.1 mRNA upstream 248940 9017086 ~ 9020129 (+) True fgf23
XM_039791883.1 mRNA downstream 400083 9673991 ~ 9679815 (+) True cd36
XM_039791601.1 mRNA downstream 678692 9952600 ~ 10029904 (+) False chrm2a
XM_039791603.1 mRNA downstream 679286 9953194 ~ 10029904 (+) False chrm2a
XM_039791602.1 mRNA downstream 680019 9953927 ~ 10029904 (+) True chrm2a
XM_039791146.1 mRNA downstream 826788 10100696 ~ 10103605 (+) True LOC120553071
TU307644 other upstream 27720 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 95849 9134594 ~ 9173220 (+) True lhfpl3
TU307294 other upstream 836372 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 1868670 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 1936810 7323070 ~ 7332259 (+) True amdhd1
unassigned_transcript_1481 other downstream 918418 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 920522 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1483 other downstream 921212 10195120 ~ 10195206 (+) True trnay-gua_59
TU308063 other downstream 1423346 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 1458161 10732069 ~ 10737503 (+) True G227141

Expression Profile