RNA id: XM_039791675.1


Basic Information

Item Value
RNA id XM_039791675.1
length 2966
RNA type mRNA
GC content 0.47
exon number 14
gene id asb15b
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14397723 ~ 14413015 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGAGTTAGAGAGTAGATGTGCAGAAAGTACAGTTGcattatatttttatgacaCACTTATGAAGTAAAAGCCAATACCCTTAATTggttattatcattattatcaaaTCAATACCAGTCACGTAGGCGAAGATTCAGAAAAATAGTGTGAGGTATTAGAAAAGATTAACCCTTGAGATAACTGTTGTGCGGAATGTGGGGATGTAACACAATGCAGGTAAACAGGTACcttcaaacatgtcatgtgtctttgtgtttacaATGACCAAATAACCCCATTTGAATGAAGTCACAGTGTAGCCAATCAAGCAAAGGAGTACTTTGTACACAGGAGTTGGAAGTTAAAACGGAACAGTGTTGAGTCAGGTCGTCTATAGCAGGTCACATCTAAATATAACCTGGACAGCCTCTGACCACATAACAAAAACGCACGGGCTGCAAGCTGGAGTGCTCCAGGGCACACGTTCACATCAACAGAAATGGATGAGCAGGAAAGCATAAATGAGGAACTTATCGAGTTTGCCATTCGAGAGAGCATTCCAGATGCCCACAAGCTGCCATGTTCGAACAGGAAGGAAGCAAACAGTGACGACTTAGTCAAGATAATGGCAGCCATTCACAAGGGCGATGTGTATGGGCTGCAGGAGCTGTCAGGTTGTGTGTCTGCCTTCAGAGAGAGCGACAGCAGGGGCTGGCTGCCTCTGCATGCGGCAGCTGTGCAGCCACAGCGAGACATCCTGTATGTGGTGCTGCAGGcAGTGTTGACATCTACAGACCTGACCCTGGAGGAGCAGACAGACAATGGGGACACGTCTCTGACTCTGGCAGCAGAGGCCGGCCTGGTGGAAAACGTCAGGATGCTGCTGCAGCACGGAGCTTCACCACACAACACCAACAGCAGGAACGAGTCTCCTCTGCTGATTGCAGTAAGACAGAGATCATACGACATGGTTGTATCCCTGGTCAAGGCTGGGGCCTTTGTGGAGCAGGTGTGTCTCACTAAGTGGACGGCCACACATGAAGCTGCAAAGGTGGGTTGTCCAGCTATTCTGATGCTGCTGCTTCAACACGGAGCCAAAGTAACAGCCAGAGGGGAGCATGGGGTGATTCCTCTGGGGATCGCAGCTGAATATGGCAACACTGAAGCCTTGGAGATACTCATACAGCATGGTGGTGACGTGAATGCCCAGTCCAGCAATGGAGACACCGTCCTCTATGATGCGTCAGGATCTGGAAACCTGGACTGTGTCGAGCTGCTCCTGCGCCACAGAGCCGACCCAAATGTAGCCAGCTACGCCTGCCAGCTGCCCATCCACAGAGCTGCATATGAGGGACACATACTAATCCTGAGGACCCTCATCCCCATTACCACAAAACGAGCTATCCGTCTCTCAGGCCAGAACCCCATCCACTCAGCAGCTGACGGGGGACAGGTCAAGTGTCTGGAGCTGCTAATCCGGAAAGGATATGATGTCAACGCCTTGCTGAAAACACACATCTCTGAGATCTACGGGGACCTCAGGAAGACTGCTCTGTACTTTGCTGTTTCCAACGGTGATGTAAACTGTGCTGAGATGCTGCTGGCAGCTGGTGCAAACCCTGACCTGGACCCGCTACGATGCATCCTGGTCGCTATACGCGCCGAGAGGTATGAGCTGGTGCAGCTGTTGCTGTCCTATGGAGCAGAGGTGAATTGTTACTTCAGAGTGATCAACAACACACTGTTCCCCACCGCCCTGCAGTACAGCCTGAGGGACCCCGtcatgctgcagctgctgctcaaCAGTGGATATCAAGCTTACAGGTGTTTCCattgttgccatggtaacagtgAAGAAATGGACAGTGGCTGGACTGACCTCCATAACCAAGCCTACCAGATTTACAGTCAACCTAACGTCATCTCATTCTGCGAGTTTGTATCTGTGTCGTGGGTCACACATCTGGTCGGCAGTGTTGTAAGGATGCTCCTGGACTACGTCAGCCACGTCAGCATCTGTCCCATCCTCAAACGCGTCCTGGAGAATACGCTCGAGTGGGATGAGATTTCTGACATACTGAGCAAGCCACGGTCCCTGCAGCACTTGTGTCGGCTGGTAATCAGAGGTCACATGAGCCTCAGGACGCTGAATGACCCTGAAGCCGTGGCTGCTGTCCCATATCCTCCGAGACTGAAAAACTACCTGACCTACAAAGAGTGACCTGTATGATCTCTCCTCTACGCGAAACACATTCTATTTATAGGAGTGTGATTGAAACACTAATAAAAAAAGCACTAGTCGCTCTTTTAGCCAATGGGAATATATCTTCTCTCAAAGTCCTTTTGCATTTCATGAGTCACGTTGTTATGAGCTTGAGCGCCTCATAGTGTGTGACAGTGTCTACTATTACTTTTATATGTCACAAAAGAAGAATTTTTCTTCACAGCATTGAACAATTAAAATGTCTCTTTTCTTTATGGTGTCAACGTACGTATTTTGCACTGACATAGCACATTCTATCACCTTACAATCAGCTTTGAAATCCATCCCAGTGTTATTCCTGAAAAGATGCTTTTGACCAAAACAACAATTTCTGTGTTGCCTTGCTGCTGTCTTTCTATTTGTGTCAAACGTAGATTTCTTGCAAATATTTAACGCAATGTACACCCACGCAGGTGTTTTCACTTCTCACTAATTGGACCTCTGCTCAAGGAAAAGTTAGACAGGGAATTCTATGAGGTCACCAAACTACATCAACCAATCagtaagtgaaaacacctgtgtgggtggaaAACATTATTCTCAATTTGTGCTGGCTTTAAGTCTTCATATTGTGTTACTCAATATGGGGTTTgaaaactaaataataatagtatTGTTACTTAAATCTAACATGGAATGTATTAGTAATACATTTGAATGATATCAGCATAATCCCTGTTCTTTCATTATGTCCTCTGCGCCAGAATAAACATTTTGGAGTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10337 ASB15; ankyrin repeat and SOCS box protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309182 lncRNA upstream 28179 14376864 ~ 14378694 (+) True G227875
TU309181 lncRNA upstream 31408 14374819 ~ 14375465 (+) True G227874
TU309146 lncRNA upstream 72950 14326137 ~ 14333923 (+) True G227843
TU309111 lncRNA upstream 187269 14219309 ~ 14219604 (+) True G227811
XR_005638172.1 lncRNA upstream 290537 14115743 ~ 14116336 (+) True LOC120553487
TU309214 lncRNA downstream 14086 14427101 ~ 14427328 (+) True G227895
TU309215 lncRNA downstream 15170 14428185 ~ 14428586 (+) True G227896
TU309224 lncRNA downstream 49146 14462161 ~ 14462474 (+) False LOC120553353
TU309225 lncRNA downstream 49146 14462161 ~ 14462447 (+) False LOC120553353
XR_005638167.1 lncRNA downstream 87786 14500801 ~ 14547427 (+) True LOC120553441
XM_039791616.1 mRNA upstream 32219 14367920 ~ 14374654 (+) True ints13
XM_039791923.1 mRNA upstream 239277 14160077 ~ 14167596 (+) True LOC120553477
XM_039791678.1 mRNA downstream 528 14413543 ~ 14420959 (+) True lmod2b
XM_039791686.1 mRNA downstream 41578 14454593 ~ 14462460 (+) False LOC120553353
XM_039791688.1 mRNA downstream 41583 14454598 ~ 14462460 (+) False LOC120553353
XM_039791683.1 mRNA downstream 41589 14454604 ~ 14462460 (+) False LOC120553353
XM_039791685.1 mRNA downstream 42310 14455325 ~ 14462460 (+) True LOC120553353
TU309000 other upstream 401980 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 402024 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 571872 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 572542 13834221 ~ 13834331 (+) True trnal-caa_24
unassigned_transcript_1492 other upstream 573724 13833039 ~ 13833149 (+) True trnal-caa_23
XR_005638140.1 other downstream 755589 15168604 ~ 15197830 (+) False LOC120553256
XR_005638118.1 other downstream 2358043 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 2358047 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 2506648 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 3177076 17590091 ~ 17590163 (+) True trnak-cuu_15

Expression Profile