RNA id: XM_039791678.1


Basic Information

Item Value
RNA id XM_039791678.1
length 2431
RNA type mRNA
GC content 0.50
exon number 6
gene id lmod2b
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14413543 ~ 14420959 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCCCTCTCTTAAGGCCCAAAGAGCAGCTGGCGAGATTAGAGTGGAGaggacaccaacacacacactcaaacactcacacactcacagcaaCACGGCCAGCCAGGATAGATCCGGTTCAGATTCATCCGGCTAGGATCACCTCAACTGGGCCCCTCATGTCCGTGGATCTCCAGCAACCTCACGGTGgactttgtcttttgttggaaCCTCTACTCCCACACACCTACTTCATTTTGGGGTCCAGACTGAATCGCATGCAACTCAAGAACTGGTCTTTCTGTGGTTGTTTAAACTCATACTGACCGGTCTGTGCTAACTACACTTTGGCCATGAGCTGTTTTGGGTACCGCCGAGAGTTGAGTAAGTACGAAGATGTCGATGAGGACGAGCTCTTGGCTTCCCTCAGCCCTGAAGAGCTGGCTGAGTTGGAAAAGGAGCTGGTAGACATTGATCCTGATGCCAACGTGCCCATAGGACTTAGACAGAGAGACCAGACGGACAAGACCCCAACAGGCACCTTCAGCAGAGAGGCCCTCATGAAGTATTGGGAAAACGAGACACAGAGATTGCTGGAGGACGAGATAGGTGGAGGAAGCCCCAAACAGgatgaagaagaagaggaggagtgtGTGACAGACGAAAACAGCGGGGCAGAGGATGAAAAAGATGTTGAAAATGAGAAAGAACAGAACAAGCACGAAACACAAAAGCAGAAGGAAGACgaagatgaagaggaagaggaagaggaggaagaggagagtgaggaagaggaggaagctgtaacagaggaggaggaagatcaggaggaggaggaggaggaggaggaggaggaacaaGGTAATATATTAAAACCTGAACCCTCAAAGGATTCTGGGGCTTTGATGTCACAGGCCGAAACCCCAATGCTACTGAAGCCGCAGAGGGTGGAGCCTATGAGACTGACTCCTCCCCCTCCACCTGCCGACCTGAACGCGACCGGAAACCCAACAGTTGTCGACGAAGCTCTCCAACAAGCTCTTAGTGACGACCCTGAACTCACAGAGGTTAATCTCAACAACATTGACGATATCTCACAGGAAACCCTAATCCGATTTGCTGAAGCACTGAGGTCCAACACACACGTTCGGGTCTTCAGCCTCGCCAACACCCGGGCCGACGACCCTGTGGCTCTGGCCATTGCTAAGATGCTGAGGGAGAACTCGTCCATCACTAGTCTGAATATAGAGTCCAACTATGTGACTGGAAAAGGTGTGATGGCGCTGGTTCAAGCACTTCCTGGAAACAACACCCTGACTGAGCTTCGGTtccacaatcagagacacatgTGTGGAGGACAGGTAGAGATGGAGATGGTGAAGATACTGAGGGAAAACTACACTTTGATCAAGCTGGGCTACCAGTTTAACCTGCCTGGTCCCAGGATGAGCATGACGGGGATCCTCACCAGGAACCAGGACCGCAAGAGACAGAAACGGCTGCAGGAGCagaaaaaacagcagcagcagagccaaCAGGGGGCGCCAGATGGAGCTGTTAACCCCAGAACCACTGCACTGaaAGGAACTCCTCGTTCATCACCTTACAGCTCACCCAGAGCCTCACCTTGGTCCTCACCCAAACTTCCCCGGAGTGACCTGGCTAAAAAACATACTCCTCCTGCtccacctcctccccctccaccacctcctcctcccccacctccccccccaTTGCCGGCTCCCCCACAGCGGGAGAAGAAGCCCACCAGGATGATTGCGGAGGTCATCAAGGCACACGAGGCAGGCAGCAAGAAGATGAGAAAGACAAAAGGTAAGAAGGGCAAGAAGGGGAAGGAGTCGGGAAAAGAAGAGACGAGTAGCATCCTGAAGGAGCTCAAGAACGCGCTGAGGCCCGTGTCAGTGGAGCGGCGAGGGGAGGAGCACAGCAGGCCGTCCACGCCAATAAGGTCAGCCCACGACCAGCTGATGGAGTCCATTCGCAACAGCAGCACCTGCCGCCTGAAACGGGTGGAAGTCCCACATTATCTACGATAATACAAGCAGACGTAAAAGGGGTCTCTTCGTTGCCATGGAAATTGGGGAGTCTgcataatgatgatgatgatgatgatgatgatgatgttaatGGAGTGATGAAAGGACAAGATGAAAACATGTTGGTGGTGCTTAGCAGGCAAAAACTGAATTCTtattcatgaaaaagaaaatatactgGAAATTTGCACTGCAGTAACAGCTTtacaagttgtttttttaaagtattcAAGTATACTTGGAAAtggtatttgtattttaattttgaaatgaGTTGACTGAGCAGTTTACTGATATGTTTTCTAATTCACCGTTTTCTTGTAAAATTGTAAATACGATCTGTTGCTGGTTGAATTATGTGTTCATTTCTAAATATAACCATTTGGTGTTTACAATA

Function

GO: NA

KEGG:

id description
K22030 LMOD; leiomodin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309182 lncRNA upstream 34849 14376864 ~ 14378694 (+) True G227875
TU309181 lncRNA upstream 38078 14374819 ~ 14375465 (+) True G227874
TU309146 lncRNA upstream 79620 14326137 ~ 14333923 (+) True G227843
TU309111 lncRNA upstream 193939 14219309 ~ 14219604 (+) True G227811
XR_005638172.1 lncRNA upstream 297207 14115743 ~ 14116336 (+) True LOC120553487
TU309214 lncRNA downstream 6142 14427101 ~ 14427328 (+) True G227895
TU309215 lncRNA downstream 7226 14428185 ~ 14428586 (+) True G227896
TU309224 lncRNA downstream 41202 14462161 ~ 14462474 (+) False LOC120553353
TU309225 lncRNA downstream 41202 14462161 ~ 14462447 (+) False LOC120553353
XR_005638167.1 lncRNA downstream 79842 14500801 ~ 14547427 (+) True LOC120553441
XM_039791674.1 mRNA upstream 528 14397723 ~ 14413015 (+) False asb15b
XM_039791676.1 mRNA upstream 528 14404378 ~ 14413015 (+) False asb15b
XM_039791675.1 mRNA upstream 528 14406873 ~ 14413015 (+) True asb15b
XM_039791616.1 mRNA upstream 38889 14367920 ~ 14374654 (+) True ints13
XM_039791923.1 mRNA upstream 245947 14160077 ~ 14167596 (+) True LOC120553477
XM_039791686.1 mRNA downstream 33634 14454593 ~ 14462460 (+) False LOC120553353
XM_039791688.1 mRNA downstream 33639 14454598 ~ 14462460 (+) False LOC120553353
XM_039791683.1 mRNA downstream 33645 14454604 ~ 14462460 (+) False LOC120553353
XM_039791685.1 mRNA downstream 34366 14455325 ~ 14462460 (+) True LOC120553353
XM_039791687.1 mRNA downstream 35871 14456830 ~ 14462460 (+) False LOC120553353
TU309000 other upstream 408650 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 408694 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 578542 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 579212 13834221 ~ 13834331 (+) True trnal-caa_24
unassigned_transcript_1492 other upstream 580394 13833039 ~ 13833149 (+) True trnal-caa_23
XR_005638140.1 other downstream 747645 15168604 ~ 15197830 (+) False LOC120553256
XR_005638118.1 other downstream 2350099 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 2350103 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 2498704 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 3169132 17590091 ~ 17590163 (+) True trnak-cuu_15

Expression Profile