RNA id: XM_039791680.1


Basic Information

Item Value
RNA id XM_039791680.1
length 3538
RNA type mRNA
GC content 0.54
exon number 24
gene id LOC120553351
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18667121 ~ 18705237 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCGCTAAGAGGATAAAGGAAAAAGGGAAATCAAGCTATTTATAAGCGGGACTATTTGGAATATCCACCGGCGACACAATGAGCGGCGGGCCGGATGAGAGCTCGGTGCGCGTAGCCCTGAGGATCCGTCCTCAGCTGGCCAAAGAGAAGATCGAGGGCTGCCACATCTGTACGTATGTCATGCCCGGGGAGCCGCAGTTGGTCCTGGGTAAGGACAAGGCCTTCACCTACGACCACGTCTTCGACATGGACACCCAGCAGGAAAGCATCTACACCCACTGCACCGAGAGCCTCATCGAAGGCTGCTTTGAGGGCTACAATGCCACTATCTTTGCATACGGACAGACGGGTTCGGGGAAGACCTACACCATGGGAACCGGCTTCGACGTCAACATTGAAGAAGACGAGCTGGGTATCATTCCCCGGGCCATCAACCACCTGTTCAGAGGGGTCGAGGAGCGCAGACAGGCTGCCACCGAGCAGGGCAAGCCTGTTCCTGAGTTCAAGATCAACGCACAGTTCCTGGAGTTATACAACGAGGAGGTGCTGGACTTGTTTGACTCGACGCGAGACATTGAGGCCAGGAAGCAACGATCCAATGTCAAAATCCACGAGGACGCCAACGGAGGCATCTACACCGTGGGGGTCACCACCCGCACCGTCACCTCTGCGGCTGAGATGATTCAGTGTCTGAAGCTGGGCGCTCTGTCTCGTACCACCGCCAGCACTCAGATGAACGCCCAGAGTTCGCGCTCCCACGCCATCTTCACCATCCACCTGTGCCAAGTGCGAGTCTGCTCTCTCGATAACGACGATAATGTAACCGACAACCGTCTAGCTAACAGCTCAGAGATTAACGAGTTTGAGACGCTGACAGCCAAGTTCCACTTTGTGGACCTGGCTGGTTCCGAGAGACTGAAGAGAACTGGAGCCACAGGAGACAGGGCTAAAGAGGGCATCTCCATCAACTGTGGCCTGCTTGCTTTGGGAAACGTCATCAGCGCTCTGGGAGACAGGAGTAAGCGCTCCTCTCACGTGCCTTACAGAGATTCCAAACTGACCCGGCTGTTACAGGACTCGCTAGGCGGCAACAGTCAAACAGTGATGATCGCCTGTGTCAGCCCGTCGGACCGGGACTTCATGGAGACCTTGAATACTCTGAAGTACGCCAACAGAGCCCGAAACATTAAGAACAAGGTGATGGTGAACCAGGACAAAGCCAGCCAGCAGATCAGCACCCTGAGGACGGAGATAGCACGACTGCAGATGGAGCTGATGGAGTACAAGACGGGGAAGCGTATGGTTGGTGAAGATGGCATGGAGGGCATCAACGACTTGGTCCATGAGAACTCCATGCTGCAAACAGAGAACAACAACCTGAGGGTGCGAGTGAAGGCCATGCAGGAGACCATCGATGCCCAGAGAGCTAGACTCACACAGATCCTCACTGACCAGGCCAACCAGGTCCTGGCTAAAGCAGGTGAAGGCAGTGAAGAGATCGGGAACATGATTCAGAACTACATCAAAGAAATCGAGGAGCTCAGAGCTAAACTTCTTGAAAGCGAGGCTGTGAACGAGAGCCTCAGGAAGAGTTTGTCTCGGGCCTCCACACGCCCCTCGCTTTACGGCGGCCCTGGCGGCTCCTTCTCCCCTGCCCTCCTCGCCCCTGAGAAGGAGGCCAGCGACGTCATCGAGATGGCCAAGAAAAGCCTGGAGAAACtgaagaagaaggagaggaagaagaagaagagACTGAGGCGCTATGAGGAGAGTCACCACCACGAGGTTGAACACACCAGTGTTATCAAAGAGGAAGTGCCGGACAACGACCACGAGCGAGGCAACGAGGAGGCAGAGGAGGGCAGCGACCACGAAGAGGGCGAGGACGcggatggagaggaggaggacttTGACATGGTGGGAGACGAGACGTCTGACGATTCTGACTCTGACGAACTGGAGGAGAAAGAAAACGTCCAGGCCGACCTGGCCAACATCACCTGCGAGATCGCCATCAAGCAGAAGCTGATAGACGAGCTGGAGAACAGCCAGCGGCGTCTGCACACTCTAAAACAGCAGTACGAGCAGAAGCTGGCCATGCTGCACAACAAGATCAGAGACACCCAGCAGGAGAGGGACAAGGTGCTGCATAATATGGGTTCAATGGAGACAGGCACGGAGGAGAAGGCCAAGAAGATCAAAGTTGAGTACGAGAGGAAGCTGAGCTCCATGAACAAAGAGCTGCAGAAGCTCCAGTCGGCTCAGAAGGAGCACGCCCGCCTGCTGAAGAACCAGTCGCAGTACGAGAAGCAGCTCAAGAAACTCCAGCTGGATGTGACCGAGATGAAGAAGACCAAGGTGGCGCTGATGCGTCAGATgaaggagcagcaggagaggaACCGAGTCACAGAGTGCAGGAGGAACAGGGAGATCGCCTCTCTGAAGAAAGACCAGCGCAGATCTGAGCACCAACTGAAGCAGATGGAGGCCCAGAAAAGACAGCAGGAGTTGATTCTTCGCAGGAAGAATGAAGAGGTGACCGCTCTTAGGCGGCAGGTGAGGCCCGTGTCTGGGAAGGTGAGCAGGAAAATCAGCTTACCTGAACCCCTCCAGGAGCAGTCGCACAGAGCCACCCCGGGGCGGATGATTACATCCGGAGCGTCTGCGGTCAATGGAGCCAGGAGTTCCCCGGTGCGGATGGGAAGTACCTACCTCAGCAGGACGGCCAGGGCCAAATGGCAGTCACTGGAGAGACGTGTCACTGACATCATCATGCAGAGGATGACCATCTCTAACATGGAGACCGATATGAACAGACTGCTGAAGCAACGGGAGGAGCTGACCAGGCGGAGGGAGCGTGTGtccagaaaaagagaaaagatggCGGTGGAGGGTGCAGACGCCGACCGTTCCCTGGCCTCCCTGAACGAAGAGCTGGAGTCTCTGAGCGCCAACATCGACTATATCAACGACAGCATCGCCGACTGCCAGGCCAACATCATGCAGATGGAGGAGGCCAAGGAGGAAGGAGACACAGTGGATGTTACTGCGGTGATCAGCTCCTGTAATTTATCAGAAGCCCGCTTCCTTCTGGATCATTTCATGACTATGGCCATCAGTAAGGGTCTGCAGGCGGCTCAGAAGGATTCCCAGCTGAAGGTGATGGAGGGCCGGTTGAAGCAGACGGAGATCAACAGCGCCACCCAGAACCAGCTGCTGTTCCACATGCTGAAGGAGAAAGCAGAAATCAACCCGGAGCTGGACGCTCTGCTGGGCAGCGCTCTGCAAGAGTTAGGTTACCTGTCACCAGGTGAGTACGGGTTGAATAGCAATGTGTTTGAGAGAGCATGGCACATGCGCACTACAAGATTTCCACAACATTTACCCCTAATTAAAGGCACATATGCAGGCAAACTAAAAGattaaaaagaacattttacTTTATGTTTAGAGCCTTTTTAAACTTTGGTCCCATGAGTGCATTTAAACTTTGTAAAGTGATGTAACAGTGCATTGTACGGCTCTTtggctttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310256 lncRNA downstream 111170 18558601 ~ 18559279 (-) True G228683
TU310257 lncRNA downstream 111940 18556053 ~ 18558509 (-) True G228684
TU310249 lncRNA downstream 300705 18363259 ~ 18369744 (-) False gramd4a
TU310251 lncRNA downstream 323452 18304585 ~ 18346997 (-) True LOC120553191
TU310292 lncRNA upstream 33159 18738396 ~ 18739510 (-) False LOC120553633
TU310303 lncRNA upstream 175924 18881161 ~ 18884075 (-) True G228713
TU310334 lncRNA upstream 188403 18893640 ~ 18975820 (-) True G228731
TU310370 lncRNA upstream 309418 19014655 ~ 19022242 (-) True G228759
TU310342 lncRNA upstream 456780 19162017 ~ 19270336 (-) False sox5
XM_039791861.1 mRNA downstream 17759 18561096 ~ 18652690 (-) True LOC120553458
XM_039791712.1 mRNA downstream 134807 18533638 ~ 18535642 (-) True tprkb
XM_039791711.1 mRNA downstream 140357 18524936 ~ 18530092 (-) True trmu
XM_039791746.1 mRNA downstream 146573 18429107 ~ 18523876 (-) False celsr1a
XM_039792262.1 mRNA upstream 5777 18711014 ~ 18731666 (-) True LOC120553632
XM_039792263.1 mRNA upstream 33271 18738508 ~ 18823090 (-) True LOC120553633
XM_039791407.1 mRNA upstream 323372 19028609 ~ 19270239 (-) False sox5
XM_039791408.1 mRNA upstream 323372 19028609 ~ 19270239 (-) False sox5
XM_039791404.1 mRNA upstream 323372 19028609 ~ 19270239 (-) False sox5
XR_005638136.1 other downstream 249042 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 569454 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 742744 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 1368251 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 1847017 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 733280 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 737995 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 741784 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 742827 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 746751 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile