RNA id: XM_039791695.1


Basic Information

Item Value
RNA id XM_039791695.1
length 4698
RNA type mRNA
GC content 0.53
exon number 20
gene id upf2
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4495890 ~ 4522614 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTTAGGCAAAATTTGTGGAACAACCGTGAGAGGGTCCTTCTGTTGTTCACACGGAAACCAACCCCAATGACCGATGTTTGTTATGCTACATTAGCAGTATGCCTGCTGAACGCAAGCGCTCCGTAAACATGGACGAGAAAGACGTTTGCACCTTCAGTAACAAGGAAAAAGAGAAGGACAGAGATGGCGAGAGAAGACCAGCGTCTGCCCGAGACAAAGCAAAAGATGAGGCCAAAGTGAGCGGTAAAAAAGACAGCGgcaaggaggagaagagaaagcgcctcgaggaggagaagaagaagaaagaggaaaaggagcgaagaaagaaagaggaggaaaagcaGAAAGCGGAGGAggagcagaagaagaaagaggaggaggagaagagacagcaggaggaggaggagcggaAGCTTCAAGAGGAGGAAGTCAAAAGACAgcgggaggaggaggcagcTCTCCTCAAGGAAAAGGAGGAGGGGCATCAGCTGCACCAGGAGGCCTGGGAGCGCAATCAGTGCAGGAAGGAACTCCGCAGCAAGAACCAGAACGCCCAAGAGGGTCGGCCCGAAGAGGCCTTCTTCAGCCGACTGGACTCCAGCCTTAAAAAGAACACCGCCTTTGTCAAGAAGCTGCGTACACTCACCGAACAGCAACGAGACTCGCTCTCCAATGACTTTGCCTCACTGAACCTCAGCAAGTACATCGGCGAGGCCGTGAGCTCTGTCGTGGAGGCCAAGCTGAAAATCTCCGACGTCGGCTGCGCTGTCCATCTCTGCTCCCTCTTCCACCAGCGGTACGCTGAGTTCGCTCCGTTGCTGCTCCAGGCGTGGAAGAAGCACTTTGAAGCGAGGAAGGAGGACAAGGCGCCCAACGTGAGCAAGCTGCGCACAGACCTGCGCTTCATCGCCGAGCTCACCATCGTCGGCCTCTTCACCGACAAAGAAGGGCTTTCGCTGATTTACGAGCAGCTGAAGAACATTATCGGGACCGACCGGGAGACGCACACTCATGTGTCTGTGGTAATCAGCTTCTGTAAGCACTGTGGGGACGACATCGCTGGCCTTTTGCCCCGCAAGGTGAAACTAGCTGCCGAGAAGTTCGGTTTGGGCTTCCCTCCGAGCGAGATAATCAGCACGGAGAAACAGCAGCCCTTCCAGAACCTGCTACGGGAGTACTTCACATCACTCACCAAACACCTGAAGAAGGACCACCGGGAGCTGCAGAACACTGAGAGGCAGAACAGGCGTATCCTACATTCCAAAGGGGAGCTGAGTGAGGATAGACACAAGCAGTATGAAGAGTTTGCCACTTCCTACCAGAAGCTGCTGGCGAACACTCAGTCCCTGGCTGATCTGCTGGATGAAAACATGCCCGAGCTGCCCGTGGACAAGACTGTGCAGGAGGAGCACGGCCCCGGCATTGACATTTTCACCCCTGGAAAGCCCGGAGAGTATGACCTGGAGGGAGGGATCTGGGAAGATGAAGACGCTCGTAACTTCTACGAGAACTTGGTGGACCTGAAGGCCTTCGTCCCTGCCATCCTCTTCAAGGACAACGAGAAGAGCAGCCAAGGCAAAGACAAGGACGAAGCCAAAGATGGCAAAGAGGGGAAAGACGCGGCCAGCACCACAGAGGAActggagctggagctggaggCTCTGGACATCGCAGATGAACCTATGGAACTGGAGGGACCAGACGAGGCAGAGAATGAAGAACTGGCCAAAAAACTGCTGGATGAGCAAGAACAAGAGGATGAAGAGGCCAACACAGGGTCCCATTTGAAGCTAATCGTGGACGCCTTCATCCAACAGCTCCCCAACTGTGTCAACAGAGACCTCATAGACAAGGCTGCCATGGACTTCTGCATGAACATGAACACCAAGTCCAACAGGAGGAAGCTCGTCCGAGCCCTCTTCACTGTCCCCAGGCAGAGGTTGGATCTTCTGCCCTTCTACTCTCGCCTGGTGGCAACCCTTCATCCCTGCATGTCAGACGTGGCTGAGGACCTTTGCTCCATGCTGAAGGGAGACTTCAGGTTTCACATGCGGAAGAAGGACCAAATCAACAttgagacaaaaaacaaaacggtCAGATTTATCGGGGAACTGGCCAAGTTCAAAATGTACTCAAAAACGGACACGCTTCATTGTCTCAAGATGCTGCTGTCTGATTTCACTCATCACCATATAGAGATGGCCTGCACACTGCTGGAGACCTGCGGCCGCTTCCTCTTCAGATCCCCCGAATCTCACCTGCGTACCAGCGTCTTGCTGGAGCAAATGATGCGCAAAAAGCAGGCCCAGCATCTGGACGCCCGCTATGTCACGATGGTGGAGAACGCCTACTACTACTGCAACCCCCCACCCATGGAGAAGACGGTGAAGAAGAAGAGGCCCCCGCTGCAGGAGTACATCCGCAAGCTGCTCTACAAGGACCTGTCCAAGGTCACCACGGAGAAGGTGCTGAGGCAGATGCGCAAGCTGCCCTGGCACGACCCCGAGGTCAAGAGCTACCTGATCTGCTGCATGGTCAACATCTGGAACGTCAAGTACAACAGCATCCACTGTGTGGCCAACCTGCTGGCCGGCCTGGTGGCCTACCAGGAGGACGTGGGCATCCATGTGGTGGACGGAGTGCTGGAGGACATCCGGCTGGGCATGGAGGTCAACCAGCCCAAGTTCAACCAGCGGCGGATCAGCAGCGCCAAGTTCCTGGGCGAGCTCTACAACTACCGCATGGTGGAGTCGGCCGTCATTTTCCGCACCCTCTTCTCCTTCATCTCCTTTGGGATCAATCAGGACGGCAGCCCCAGCGCGCTGGACCCTCCGGAGCACCTGTTCCGCATCCGCTTGGTCTGCACTTTGCTGGATACCTGCGGCCAGTACTTTGACCGAGGCTCCAGCAAGAGGAAGCTGGACTGTTTCCTCATCTACTTCCAGCGGTACATCTGGTGGAAAAAGAGCATTGATGTTTGGACCAAGGACCACCCGTTCCCCATCGACATTGACTACATGATCAGCGACACCCTAGAGCTGCTCAGGCCCAAGATGAGGCTCAGCTGCTCCTTGGAGGAAGCCACCAAACAGGTCACCGACCTGGAGAGGGAGGTGCTCTACAAACTAGGTCTTGCCATGGAGAAGGACGGTCGCTCCAGTGCCATGAGCGAAGGCGAGGTTCTCGACGAGGAAGACGACGATGGCGATGACGACGAAGAGGGAGGTGCAGAGACTGAGGAGCAGTCGGGCAACGAGAGTGAAATGAACGAACAGGAAGAGGATGAAGGGTCAGAGAAcgaagaagaggagagggaggaagaggaagaagagaacaCCGACTACCTGACCGACtccaataaagaaaatgagaCGGATGAGGAGAACAATGAGGTGACCATCCGCGGCGGTGGACTGAAGCATGTGGCCTGCGCCGAGGACGAGGACTTCATTCAGGCTCTGGATAAGATGATGCTGGAGAACCTGCAGCAGCGCAGCGGCGAGACGGTGAAGGTGCACCAGCTGGACGTGGCCATTCCACTGCAGCTGAAGAGTCAGCTGAAGAAGGGGGGCTCCAGAGAGCAGTGCATCGGGGAGGCGGACTCGGACATCTCCGACACCATGCAGTTCGTCATGCTGACACGCAAGGGCAACAAGCAGCAGTATAAGATCCTGAACGTGCCTCTGTCATCCCACCTGGCGGCGAACCACTTCAACCAGCAGCAAGCCGAACAGGAGGAGCGCATGAGGATGAAGAAACTCACCCTGGACATCAATGAGAGACAGGAGCAGGAGGACTACCAGGagaTGATGCAGTCCCTCGCACAGCGTCCGGCTCCGGCCAACACCAACCGGGAGCGCCGGCCTCGCTACCAGCACCCGAAAGGCGCTCCCAACGCCGACCTCATCTTCAAGACCGGAGGAAGGTGAGACGCGATCACTGAAGCGCCGGCGCTCAAAACAAACGGCAGAATGTGTTGGATGACGATGTGAGGAATTAGGGCTCATTCTCTTACTGCAGTATGTACCGACTCTCCACCTCGTCGGCGTCTCTTTGAACAGAGTGAAAAGTGCAAGAATTAAAAGGCACGAGACGCGAGACAGACAAGAGAGGCGAGACAGGGCAGACGAGCAGGAGAGAGACCAAAGACATGTCACAGAGTAGGCTAGAGCTGCTCGAGCCCCCATCGAGGACTTTAATTAAACATCAGCAGAGGTGAAGCTTCAGCAAAGTTAGTCATAAAAACAGAGGGAAGGTTTCGACGAGGAGTTCCTGTTTCTATTTGCACTTTTAACTGATTCTGATTTTCAGGTGCTAAAGCGTTCAAGTGagatttttctttaaaagcTCTGGAAATATTTTGGAAATAAAGATGACTTGAAGTTTATACTTTGTTAACATCAACAGCACCTTGTTGTGTGTCTTTCTTGCTTCTGTAAAGTGGAACGACAACACAACATGAACATTTCCCAGGTTATGCTTTATGCATATCGTGGCAGGTGAATCCATATATTGCCACAAACGTGACACTTTTATTTTGGGAAGAGGTTTTTAAAATtggtattttctttttaaatattttaagatAATAAACCTAAAGGGAGAACAGAGGCAAGGAGAGTGGGTTCAGGGATGGAGCACAGGGTGTGATTTGTGATTTGGCTTCAGTAACAGTAATAAACTTTTATaacaagta

Function

GO: NA

KEGG:

id description
K14327 UPF2, RENT2; regulator of nonsense transcripts 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306323 lncRNA upstream 5820 4489680 ~ 4490070 (+) True G225847
TU306316 lncRNA upstream 20763 4473611 ~ 4475127 (+) False G225842
TU306315 lncRNA upstream 20875 4473611 ~ 4475015 (+) True G225842
TU306265 lncRNA upstream 42458 4450060 ~ 4453432 (+) True G225802
TU306270 lncRNA upstream 186502 4309107 ~ 4309388 (+) True G225807
TU306387 lncRNA downstream 132613 4652967 ~ 4653360 (+) True G225891
TU306388 lncRNA downstream 136141 4656495 ~ 4656819 (+) True G225892
TU306391 lncRNA downstream 137830 4658184 ~ 4658631 (+) True G225895
TU306397 lncRNA downstream 188509 4708863 ~ 4709269 (+) True G225901
TU306440 lncRNA downstream 216981 4737335 ~ 4738306 (+) True G225935
XM_039792070.1 mRNA upstream 3003 4483461 ~ 4492887 (+) True slc35e3
XM_039792060.1 mRNA upstream 47853 4200818 ~ 4448037 (+) False LOC120553538
XM_039792156.1 mRNA downstream 22819 4543173 ~ 4563272 (+) False LOC120553579
XM_039792155.1 mRNA downstream 22820 4543174 ~ 4563272 (+) True LOC120553579
XM_039792154.1 mRNA downstream 22820 4543174 ~ 4563272 (+) False LOC120553579
XM_039792157.1 mRNA downstream 22820 4543174 ~ 4563272 (+) False LOC120553579
XM_039792158.1 mRNA downstream 22820 4543174 ~ 4563272 (+) False LOC120553579
unassigned_transcript_1479 other upstream 299075 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1478 other upstream 301978 4193802 ~ 4193912 (+) True trnal-caa_18
unassigned_transcript_1477 other upstream 305104 4190676 ~ 4190786 (+) True trnal-caa_17
unassigned_transcript_1476 other upstream 305551 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1475 other upstream 307162 4188618 ~ 4188728 (+) True trnal-caa_15
TU306390 other downstream 137090 4657444 ~ 4657969 (+) True G225894
XR_005638175.1 other downstream 763405 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other downstream 763405 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other downstream 763405 5283759 ~ 5373203 (+) False abcc9
unassigned_transcript_1480 other downstream 2626915 7147269 ~ 7147340 (+) True trnaw-cca_35

Expression Profile