RNA id: XM_039791710.1


Basic Information

Item Value
RNA id XM_039791710.1
length 2817
RNA type mRNA
GC content 0.46
exon number 3
gene id alg10
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18535729 ~ 18539427 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGCGGACCGCCAGCTGTCAAACATCGAACTCTCCCGTGTATCGATACTGCACACGGAGTTCAACCACTTTCCCTCGGAACTGAGATTGCACAGGGGTTTTTAATACGCGAGTTATGCGGTATACACGACAGTATTACAGCTAGCTTTGGGATGCATTCGGTTTTACATCGGATTTCGTCATCAAACATGGAGAAATTTGAAGGCTACATCTTCACTGCGCTTTGCAGCACCAACTTTTTGATATCCTGCCTGCTGTTCTCAAGAGTCACTCGGGAGCAAAGGGAGCCATACATGGACGAGATTTTTCATATTCCACAAGCTCAGAAATACTGCCATGGGAAATTCAACGAGTGGGACCCAATGATCACCACTCTCCCAGGCCTCTACCTTGTCTCTGTGGGAATCATCAAGCCCGTGGTGTGGCTCGCTGACCTGACCGGCCAGGTGGTGTGTTCCACGGCCATGCTGCGCTTCATCAACCTGCTGTTCAATTGCGGCAACCTTTACCTGCTCTATCTGCTCATCTGCAAACTGCACCTCAGGGAGAAGACACGAACAACCTCGCGCAGAGTCCTCTCAGCGCTGTCTCTATCCACCTTCCCTGTGCTCTACTTCTTCAACTTCCTCTACTACACCGACGCCGGATCTACTTTCTTCACCCTCTTCACCTACCTCATGACGCTCTACGGCTGCCACAAGGCCTCAGCGCTCCTCGGCGTCTGCTCCGTGCTCTTCCGCCAGACCAACATCGTCTGGGTGGCCTTCTGCGCAGGCACTTTGGTGGCCGCCAAAATGGACGAGGCCTGGAGGGTGGAGCATACGAAAAAGAGGGACGAGAAGTCTCCTCCATCCCAGGTCCCTCTGTCATTCAGCGGAGCTAAGAAAGTGGTTCTTTTCACGCTGGAGTTCCTCACCTCACCCAGTCATGTGAAGGCGGTGCTGCTCGTGGCCTGGCCGTACGCAGTGGTCGGCGTGGGCTTCCTGGGGTTCGTGGTGCTGAATGATGGGATAGTGGTGGGTGACAGGACGAGCCACGAAGCCTGCCTCAACTTCCCCCAGCTCCTCTATTTCTTCTCCTTCACCCTCTTCTTCTCCCTCCCCGTCTCGCTTTGTTACCACCGCGCTCTTCGCTTCCTCCAGGCTCTGAAGAAGCAGCCTCTGTTCTTCCTCTTCGTCACGTGCGTCTCCTTGCTCCTGGTGTGGAAGTTCACCTTCGTCCACAAGTACCTCCTGGCAGATAACCGCCATTTCCCCTTCTACGTGTGGAAAAGGCTTTTCCAGAGGCACGAGCTGGTGCGCTTTCTCCTCGTCCCCGCGTACGTGTTTGCAGGGTGGAATTTTCTGGACTCCTTCAAGTCGCGCTCACTGTTCTGGAGTCTGGCGTTCTTGGCGTGCCTGCTGGCTGCAACGGTCCCCCAGAAGCTGCTGGAGTTCAGGTACTTCATCGTTCCTTATCTGATGTACCGCCTGCACATGCCTCTCCCCTCTCTTACCAGACTCATTGTGGAGTTTCTCCTGTACACGGTGGTCAATGCTGCCACACTTTACATCTTCATCAGTAAGAGCTTCCACTGGCCGGACAGCACGGCCACACAGAGGTTCATGTGGTGAACAAAAGAGACTGATGTCAGGAGTTCCCGGACTCTCAACAGGATGTCGGTATCAAAAGATTTTTCCAAGGAACCACACAGTACATGTAATATCTCAGAAATCAAAGAAAAGCTTCTGTTACATCTCAAAATGGCTCCTATTTTCACCATTTTTATACAGTGTAACCAAATGGTGTTTGGCATAGATTATAGGCTTACACTGAGAATCAATATTGCTAGTTTCAACGTGACAGGTGACagtgaaactaaactaaaaaacaTTCCATGATGAGGGTTTTAGGGTTGAGTTATGCCGTGTTTTGTTTGCAGTGAAAAAGGCCACCCACCCTGAAGCAGCACTGTATATTTACTGTGAATCAGTTCACAGTGACATGGTACTGACCGAGAATATTCCAAgagaattatttttaaaaagtattaaaggtTTTGGCCTTAAGAATACAGTGGTGGAATCAGTGTTGTAAAATCTGGTCTGAGTTTCAATGGTCTGTCTGAGAATTCACTGTGTATATAAAAGTTGCTTCTACTTCGCCTAAACAAATTTCGGTTGAACTGTTTATCCCCCTCTCCTAATATATCATGTAACATTTTCGGCAGGCTTCTGGGAATTGACGCGGCTGGGTGGTGTTTTCCTATGGCTATAACGGTTTTgtactttaaatgtaaatactGTATGCATTTTTATGAATCGATCTTTGGTGAAATAACAGTTGACACGAGATGTAAATATGATTATTAAAGAGACCAAAAATGACAATGCCATATTGTAAAGTTAAGAATTTTTATTGTATGGGATGTTTTTGTAACGATTGAGATTTTTGCTTTTTGCCAGTAGAGATCACAGCTGGACACATTTGACCCACAGACAACTTTATAATTATAGAATTAAATTGAAAATATTCACACGTCTTCAAATTTGTACCTTGCTTTTTTACTTTGACCAAGCCATAAAGATCCACTGGAAGTGATTCAGACTTTAGAAGTGTTTGTATTTcattaagtttattttttttgtactttgtaGTTTAATTGTTTACTGTCTCCCATTTCTGTTTGCTGTTTTCATTGTGCCTGATTTGTTCGTTAGTTTTCTATGTAAATACATAAGATTTAATCATGACGATCTGTCCATTCAGTTGTATGCTGCTCCCCTGTTGATACAATCTTGTGTAAAGCTTTGAATAAAATTCCTCCTGCAATATAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K03850 ALG10; alpha-1,2-glucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310121 lncRNA upstream 1380 18533301 ~ 18534349 (+) True G228593
XR_005638161.1 lncRNA upstream 50091 18482088 ~ 18485638 (+) True LOC120553397
TU310105 lncRNA upstream 70676 18429125 ~ 18465053 (+) True G228581
TU310094 lncRNA upstream 167347 18363250 ~ 18368382 (+) True G228571
TU310030 lncRNA upstream 735479 17602206 ~ 17800250 (+) True LOC120553790
TU310137 lncRNA downstream 65566 18604993 ~ 18663972 (+) True G228605
TU310143 lncRNA downstream 136924 18676351 ~ 18677565 (+) True G228611
TU310155 lncRNA downstream 199057 18738484 ~ 18739484 (+) True G228622
TU310196 lncRNA downstream 310620 18850047 ~ 18855314 (+) False LOC120553630
XR_005638160.1 lncRNA downstream 352747 18892174 ~ 18897527 (+) True LOC120553383
XM_039791713.1 mRNA upstream 2615 18530136 ~ 18533114 (+) True srr
XM_039791349.1 mRNA upstream 222023 18274421 ~ 18313706 (+) True cerk
XM_039791132.1 mRNA upstream 934008 17584582 ~ 17601721 (+) True brd1a
XM_039791133.1 mRNA upstream 934008 17584584 ~ 17601721 (+) False brd1a
XM_039791139.1 mRNA upstream 937417 17584579 ~ 17598312 (+) False brd1a
XM_039792260.1 mRNA downstream 192277 18731704 ~ 18738370 (+) True LOC120553631
XM_039792261.1 mRNA downstream 192774 18732201 ~ 18738370 (+) False LOC120553631
XM_039792259.1 mRNA downstream 283405 18822832 ~ 18854640 (+) True LOC120553630
XM_039792255.1 mRNA downstream 292069 18831496 ~ 18854640 (+) False LOC120553630
XM_039792256.1 mRNA downstream 292069 18831496 ~ 18848610 (+) False LOC120553630
TU310117 other upstream 4561 18530165 ~ 18531168 (+) False srr
unassigned_transcript_1495 other upstream 945566 17590091 ~ 17590163 (+) True trnak-cuu_15
TU309802 other upstream 1612906 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 1704486 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other upstream 1704486 16771062 ~ 16831243 (+) False cald1a
TU310402 other downstream 871063 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 919656 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 1092520 19631947 ~ 19808412 (+) False LOC120553210
XR_005638132.1 other downstream 1092520 19631947 ~ 19808412 (+) False LOC120553210
TU310593 other downstream 1442821 19982248 ~ 19985648 (+) True G228924

Expression Profile