RNA id: XM_039791711.1


Basic Information

Item Value
RNA id XM_039791711.1
length 2990
RNA type mRNA
GC content 0.43
exon number 11
gene id trmu
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18524936 ~ 18530092 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTATTAAACGGGCCTCAAACATGGCTGCTCCTTgaagtgtatatatctatgcttgaagtgacaatggagacttttttttgttatataagAAAATAGTATTAACACTATTTGTAGTTTTAAAAAATGGGTTTTATTAGGCACGTCGTGTGCGCCATGTCCGGCGGCGTTGACAGCTCTGTCGCGGCGTTGTTACTAAAGAGAagtgGTTACAGTGTAACAGGAGTTTTCATGAAGAACTGGGACTCCCTGGATGAGAGAGGGGTGTGTACCACAGAGAAAGACTGTGAGGACGCCTACAGAGTGTGTCAGACCCTGGACATCCCCTTCCATCAAGTGTCCTATGTCAAAGAGTACTGGCATGAGGTTTTCAGTAAACTATTGAAGGAATACGAGAAGGGGAGGACGCCCAACCCAGATATACTATGCAACAAGCACATCAAATTCAACCATTTCCACAAGTATGCTATCAACACTCTGGGTGCTGATGCCATGGCAACAGGCCACTACGCCAGGACGTCTCAGGAAGACGAAGAGGTTTTCCAACAGACACCCATAGCGCCGCCGATCACTCTTTTTAGAAATCGGTTTGAGATTAGAAATCCGGTGAGGTTGTACAAAGGAGCAGATCTCCTCAAAGACCAAACCTTCTTCCTCAGTCAGATCTCCCAGGATGCCTTACGACAAACCATGTTCCCATTGGCCGGACTCACCAAAGAGTTTGTTAAGAAGATTGCTGCTGAGGCAGGGTTTCACCATGTGCTGAAGAAAaaagagAGCATGGGCATCTGCTTCATTGGAGagagaaactttgaaaactttATTTTGGAGTATCTGGAACCTAAACCAGGGAACTTTGTCTCCATTGAAGACGGGGCTGTCATGGGAACACACAATGGCTGGTTCACTCTGACACTGGGCCAGAGGGCGAGAATTGGAGGGCAGAGAGACCCCTGGTTTGTGGTGGACAAAGACATTGCTACTGGAGATGTGTTTGTGGCTCCAACTACCAATCACCCAGCTCTTTTCCGTGACACGGTGCGAACGGAACGCTTCCACTGGGTAACAGTTGACCCACCTCCTGAACTAGTCAAGACCCATATGATGGATTGTCATTTCCGCTTCATCCACCAGATGCCGCTCACTCCCTGTACAGTGACACTCAACATGAACGGCTCTTTGTGGATCTCACTctcccagccaatcagagctctgACACCTGGACAGTTTGCTGTGCTCTACAAAGGAGACGAGTGTCTGGGTAGTGGGAAGATCGTACAACTGGGGCCCAGTGAATACACACTCCAGCAGGGCAGAGAACGCTTGGCAGCAGCCGCGCAGCACGGGGAGCAGCAGACGCCTGAACCAGCCAGCTGAGATGAGCTCACAGACGGCCGTGGTGGAAATGAGCTCTGTCCGGTACATTAGGTAGAGCACACTGTTCATGAAAATAAACCGTCTCTTAGACGTGGCTCTACGGCAGAGGGCCTGTTCTGGAGGCCATATTAGAAACTGTAAACgggtgtttgtttttaaatgcataTTGATAAAACAAGGACAAAAGGGTTACTCTCTGCTCTGTTTTTAGTATTTTGTGTTTAGACACTGAGAGGTTATCTGTGAGCTGCTCTGAACCATCTGCATCCAGGCCAAAGTGTGTTTTTTGAGTGTAGACTAGATGGTAATAAGTTTACTAACCAACAGtaatctcatttaaaaaaaatgaatcaagcTTTTCCGTCTATTTACTGTTATATATATCATTAGATCGACAACGACACAGGTACAGTATGTCTGTTTCTGCTTGTGATATACACGGGGTTGCCATTATTTATACTTCAGCAATCCTCCATTGAACGTTCACGGTGTCATTAGGTCAGCCATTATGCATTGCAAAGACCTTTCACCTTGACGTAATGGTAATAAAGGCAAGACATTCATATACTTGATCTGGAATTTAAGAGGTGCTGGATGTATTTTCAGTTGCCACAATTGTGGTTATCCTTTGGAATTGAAGTTGTCATATCTAAAACTAAAATCAAGctcacttttaaaaaaagtattcaGCTCTAAAATGATTTAGCAGATGGAAAACAATCCATAAAGCTAATGTTTTATTTGGAGAGTTTTTGTCTTATAGTACTCAATGTTATGACCTGTGGTCTGTAAGAAAGGTCTTTTTCAAGGATGCTCGTAGTCTGAGCCCTTTACTGTTTTCTTTATTGCAGTTGTAGGAAACCTGTGAGTGACCCTGGGAAATGGAGGCTTACTGTAGGAGAGTGGTGGGATTTGACTCTAAGCTAGCAGGGGGTTACTTGTGGGTCAAGACATGGTGGACACATTTTTTTTGCCCATCTTATCTGTGAATGAAAGCGTCCCTGATATTCTCTTGTTTGTCCAGTATAACGTGATTCAAACTTTCCGTTTACTGTAGCTTTTCCTGTCATCTCTAAGGCTGCTCATGTTGTTCATGAAGTTCCCTCCTGTCCTTTACCTTTCCTTCTGATTGACTGTAACTCCTGTTCACCCTGCCTCTGTGCCAACGGCACATCTACTGAACAGTACGTTGGTGATTGATGTTAATCTATGACTCTACTTGGTTCTTTGAATCattctcattttctttttgtttgttaattgattaattaagtTTACGCTTTAGTACTAAAGTAGAAACAAAGTACAGAGTAGTTACTCTGCACCCTTATGTTTTCTCCTCTAAGGAGAAGTGATGTACAAGAGTGGTATTGGTCGACAGGATAAATCATTGCCTAGAAACATGCCAAGTTAACAAACATTTGCAACAGAATATGATTTAATAAAACGTATTTGTTATACACGCAAGTCACATATTTGAGAGAGATAATTCAATTGTTCTATATAGTTAAAAAGGCAATGGAATTCTTTATACAAGTGCCTTTCTCTAAATGGTGTTGTAACTACTGTAAATACCTGAACATTTACAAATAAGAGAATAAACCTTATAAATGA

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0005737 cytoplasm cellular_component
GO:0016783 sulfurtransferase activity molecular_function

KEGG:

id description
K21027 TRMU, SLM3; tRNA-5-taurinomethyluridine 2-sulfurtransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310249 lncRNA downstream 155192 18363259 ~ 18369744 (-) False gramd4a
TU310251 lncRNA downstream 177939 18304585 ~ 18346997 (-) True LOC120553191
XR_005638127.1 lncRNA downstream 213189 18305560 ~ 18311747 (-) False LOC120553191
TU310039 lncRNA downstream 924751 17517663 ~ 17600185 (-) True G228522
XR_005638072.1 lncRNA downstream 1122104 17402248 ~ 17402832 (-) True LOC120552976
TU310257 lncRNA upstream 25961 18556053 ~ 18558509 (-) True G228684
TU310256 lncRNA upstream 28509 18558601 ~ 18559279 (-) True G228683
TU310292 lncRNA upstream 208304 18738396 ~ 18739510 (-) False LOC120553633
TU310303 lncRNA upstream 351069 18881161 ~ 18884075 (-) True G228713
TU310334 lncRNA upstream 363548 18893640 ~ 18975820 (-) True G228731
XM_039791744.1 mRNA downstream 1059 18429107 ~ 18523877 (-) False celsr1a
XM_039791742.1 mRNA downstream 1059 18429107 ~ 18523877 (-) False celsr1a
XM_039791745.1 mRNA downstream 1060 18429107 ~ 18523876 (-) False celsr1a
XM_039791746.1 mRNA downstream 1060 18429107 ~ 18523876 (-) False celsr1a
XM_039791743.1 mRNA downstream 1060 18429107 ~ 18523876 (-) True celsr1a
XM_039791712.1 mRNA upstream 3546 18533638 ~ 18535642 (-) True tprkb
XM_039791861.1 mRNA upstream 31004 18561096 ~ 18652690 (-) True LOC120553458
XM_039791682.1 mRNA upstream 137029 18667121 ~ 18705237 (-) False LOC120553351
XM_039791680.1 mRNA upstream 140357 18670449 ~ 18705237 (-) False LOC120553351
XM_039791681.1 mRNA upstream 140487 18670579 ~ 18705237 (-) False LOC120553351
XR_005638136.1 other downstream 103529 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 423941 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 597231 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 1222738 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 1701504 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 908425 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 913140 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 916929 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 917972 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 921896 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile