RNA id: XM_039791715.1


Basic Information

Item Value
RNA id XM_039791715.1
length 3469
RNA type mRNA
GC content 0.42
exon number 12
gene id pacsin2
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10200774 ~ 10225902 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTACTGTCACACTGTAACTGACGGTTGTGTCAGATAGTCGATCGATGGTGCCGCTGCTGAGCAAAGAAACGGTCGAAAAGATTTGTAAATTGGCACCACCAAAATAATTAACTGTTCAATTAAAACTACACCGTCAGGAGGAATAAACCCGTGCCAGGCCCTACGCACTGAGTGTAACTTAGGGCAGCAGCGATGTCGGGCTCCTACGATGACTCCATGACCGATGTCTCCAGTGATAGCTTCTGGGAGGTTGGTAACTACAAACGAGCAGTGAAACGGGTAGACGATGGTAACCGACTGTGTAATGATCTGATGAGCTGTCTTCATGAGCGTGCACGTATTGAAAAGTCCTACGCACAGCAGCTCACAGAATGGGGGAAGCGCTGGCGGCAACTCATAGAAAAAGGCCCTCAGTATGGTTCGTTAGAGCAGGCGTGGTCTGCTCTGTGCACCGAGGCGGAGAAGGTGAGCGAGCTCCACATGGAGGTGAAATCAGCACTGATGGGAGAAGACTATGAGAAACTGAAGAACTGGCAGAGAGATTCCTACCATAAACAGATGATCGGCGGCTTCAAAGAGACTAAAGAGGCTGATGACGGCTTCCGCAAGGCTCAGAAACCCTGGGCAAAGAAACTCAAAGAGATGGAGACGATGAAGAAGTCTTACCACTCTGCCTGTAAAGAAGAGAAGCTGGCAGCCAGCAGGGAGACCAACAGCAAACTGGAGAGCAACAACAACCCTGAAGCCCAAAGGAAGCTCCAGGAAAAGGTGGAGAAGTGTCAGCAGGAGGTGCAGAAGACTAAAGAACGCTATGAGAAATCCCTGGAAGAACTCGATAAGTTGACCCCTCAGTACATGGAGAACATGGAGCAGGTGTTTGAGCAGTGGCAGCAGTTTGAAGACAAACGAATCCGCTTCTTCAGAGAGCTACTGCTGGAGGTTAAACAGCACCTGGATCTCTCATCCAATCACAGATTCCAGACAATCTACCACACGCTGGAAGACACAGTCTCTGCTACTGATGCTGAAGAGGACCTGAAATGGTTCCGGTCCAATCACGGCCCCGGCATGCCAATGAACTGGCCCCAGTTTGAGACTTTGGACTGGTCCCACCCTCGCTCCTTTAAGAGAAGGTCCATTGTAGACTGGTCCATAGACCTGAACCGAACCCTCAGCAGAcgagagaagaagaagccaTCAGAGGGCGTCACACTGACGGGCATCAGTCAAACTGGGTCAGATCAGCCAGTTCAGCCTGCCAAGACCAGCAGCAGCCTGGCTGTGCCCACTAACACAGCGCCAGTGGGCTCTAACCCCTTTGATGAAGATGACGAAGATGAtggggaggaggagatggccgtGGAGCAGCCGACCACAGTCAACCACATCAGTGTtaaaaaagaggaaataaaaacTGCCAGCAGTACGGAGAAGACTCCAGACTGGTCAGATGAAGACACAGGTGGTAACCCTTTCTCCTCCAACGGTGATGGGAATCCATTCGAAGATGAGCCGGCTTCTCCCGTCATATCTGTGCCTGTCAAAGCCCTCTATGACTATGAAGGCCAGGAGCAGGATGAGCTTACCTTTAAAGCAGGTGATGAGTTCACCAAAATAGGTGAAGAAGATGATCAGGGTTGGTGCAAAGGCCGGCTCAAGGATGGAAAAACAGGCCTCTATCCTGCTAACTATGTGGAAGACATCCAGTAatgaattattacaaatgaataAATGTGAAGAAAGTGGTGTGTTGCGAAATGACAGTGCGGCTGGAAACGATATTTTTAACCCTTTTCTCCCTGTTGGCGAAGACTGGACTGGTGTTGGAGAAGGCCGGAAAAGAGAAGTTGCAGATTACTAAAGGACCACTTGAAATGTTGCTTTCCACAGATTGACAGTACAAAGATGGAAATAAACCACAAGTTTCCAGATGATTCCAGGCGAAGAAGATCGCAGGAGAAAAATTGCTGTCAGTGTATGATATGTTACTTAGAATCCCATTTATgctgttacaaaaaaaaaaatagcctttCAAGTATATATTGGATGAAATGTATGTGTGaatttatatattgtttaaacAAAACACTGGGATGACACATGCAGCCTAAATATGCAAGCCACTATGGATTAATTAAGGGAGATGACCCTTTTTATAATAATCTATTTTAGGTTTGAAAccatttctgccttttttttagaAACCAGTCCATGTATGTTAATTGTTAGATTTATTTTGGACAATGCGAGCCCTTATGTTGACATTATTGTGTCAGATTTAACCTGATTTAAATTAGTGCTAACATTATTCTGTCATTCCTTTTCAGGGTTCTGTTTTTCCATTCAGTTCATGAACTGTTGTGGTTATTTTATAAGGAATGATAAAGCTCCTTAGACCCTTATCCTGACGTAGCCTTCATTTAGTTCACAGTGAGTCGGTTCCTCTAGTGACTGCAATTGAATGTATATTCACTGATTGTATTTCCTCACTTCTTGATTGTTCACGTTTGCTAATGTTGGGTTTTTGCAAGTATTGACCCATTAACCCCTTAAACTGTCCTCAACCTTCTCACACAGATCTCTCGACTTTCTGTTGATTGTAGATTGTCCTACAATATGGGTTATTTTTCGAACACTGAATTTTTTTCACAAACGTTTATCTCACTTGAATCTCCATGTTTTAATTCTCTCACTTGGTAAATGTCAAGTTATGGGAGAATATGtaagtgtttgttgttgttttgttttttttgaaaatacgTATATTACAATTTATAGCAATAAAACCACAGCCAAGTATGGCTTGCATACATGCATGTAAATAGCCTGGATGAAACGTAGTCGAACAAATTAAGCATCAATATCAGATGATATGTAGTTGGAAATTGATGATTGTTAATTTATGATGCCACAAGTGCTTTTGTTCTACTCTTGTTAGAATGCTGTGACTGAGAATCAATTTGTATAGTAATTGAATGTTTTATGGCAAATATCCCTTAAATCTGttattttgatatatttgtAAATATGATTATTTTCCCCCATCACAGAGGGCCATACTCATTGAATGAATAAACAAATATGTGCATAATTGTTAATTTCCCCTTAGGAGCTATGATATGAATGGATTCACCTGATTTCATAACTTTAATACATATGTTTGGATCATCAAGTGTTTTGTAAGCTTGCATTTTTTGCAGCAATGAATTGCAGTCTTTTCAATTTTGCAGGCTCCAAATTCATTAATTGCCTATGTATTGAGGAAATCATTGAAAAAAAGCAATTTGATGCCTTTAACTGCAGCACGAGAGTAAGAATAATATTCTTGTCTTTAATAATAGTGAGAAAGGTGACGTTTTGCCATATTTTCAGGGCATGCTGTTGTCAAAACGGTGCAACAGCTGTACTTGGACAGTGAGGTTTGTAAATGTTGTCCCACAACATAATAAATGAATTTattggaaaaaca

Function

GO: NA

KEGG:

id description
K20123 PACSIN; protein kinase C and casein kinase substrate in neurons protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638107.1 lncRNA upstream 264181 9934175 ~ 9936593 (+) True LOC120553125
TU307795 lncRNA upstream 332689 9867575 ~ 9868085 (+) True G226930
TU307786 lncRNA upstream 374249 9796473 ~ 9826525 (+) True G226921
TU307787 lncRNA upstream 394172 9806242 ~ 9806602 (+) True G226922
TU307781 lncRNA upstream 446658 9751944 ~ 9754116 (+) True G226918
TU308026 lncRNA downstream 312294 10538196 ~ 10538689 (+) True G227088
TU308047 lncRNA downstream 399544 10625446 ~ 10627982 (+) True G227107
TU308048 lncRNA downstream 402906 10628808 ~ 10630212 (+) True G227108
TU308058 lncRNA downstream 439807 10665709 ~ 10667280 (+) True G227116
TU308091 lncRNA downstream 480008 10705910 ~ 10709545 (+) True G227139
XM_039792080.1 mRNA upstream 3535 10187418 ~ 10197239 (+) False ttll1
XM_039792081.1 mRNA upstream 3535 10187420 ~ 10197239 (+) True ttll1
XM_039792082.1 mRNA upstream 17492 10175143 ~ 10183282 (+) True LOC120553550
XM_039792304.1 mRNA upstream 26660 10165497 ~ 10174114 (+) False def6c
XM_039792306.1 mRNA upstream 26660 10165537 ~ 10174114 (+) False def6c
XM_039792107.1 mRNA downstream 727 10226629 ~ 10234656 (+) True arfgap3
XM_039792106.1 mRNA downstream 727 10226629 ~ 10232447 (+) False arfgap3
XM_039792382.1 mRNA downstream 9114 10235016 ~ 10239349 (+) True LOC120553694
XM_039792383.1 mRNA downstream 9132 10235034 ~ 10241505 (+) False LOC120553694
XM_039792426.1 mRNA downstream 23856 10249758 ~ 10284100 (+) True uhrf1bp1l
unassigned_transcript_1483 other upstream 5568 10195120 ~ 10195206 (+) True trnay-gua_59
unassigned_transcript_1482 other upstream 6258 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1481 other upstream 8362 10192326 ~ 10192412 (+) True trnay-gua_57
TU307644 other upstream 959425 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 1027554 9134594 ~ 9173220 (+) True lhfpl3
TU308063 other downstream 471352 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 506167 10732069 ~ 10737503 (+) True G227141
XR_005638076.1 other downstream 722383 10948285 ~ 10986201 (+) False impdh1b
TU308205 other downstream 876934 11102836 ~ 11112905 (+) False G227216
TU308207 other downstream 876934 11102836 ~ 11112905 (+) False G227216

Expression Profile