RNA id: XM_039791719.1


Basic Information

Item Value
RNA id XM_039791719.1
length 3029
RNA type mRNA
GC content 0.47
exon number 8
gene id pparaa
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17116753 ~ 17135130 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTATTTCCTGCAGAGGATGAGCGGAGGTTTGACAGCACGCAGGGAGACGACGCATCAAGTGGTTTTTAGCAGAGCCGAAGCGGGATCTGAACGTCCCGCGACCCGACCGAGGCGTCCATCCCGGCAGCAGCATCTGGAAATGCTTCGGATAGCAGCCGCTGAGTCTGGTGAGTAAGGGGTTGTTCCTCCCAGGTTCAGCTTGATCTCCACCATGGCAGGGGATCTCTTTAGCCCCCCGTCCCCACTTGGGGATTCCCTGCTGGACAGTCCGCTGTGTGGAGACCTGATGGCTGATCTTCACGACATCTCCCAGTCTATAGAAGATGACACGTTGGGATTTGATTTCCCGGTGTACCAGAGCACTGGCTCGGGGTCTGAGAGCTCCATCGCACTGGACACCTTGACCCCGGCCTCCAGCCCGTCGTCGGGGGTGTGTGGAGCAGCGCCGGGCCCAGAGGAGAGTTTCAGCCCCCTCAACCTGGAGTGCCGGGTGTGCTCAGACAAGGCCTCAGGCTTCCACTACGGGGTGCATGCCTGTGAGGGCTGCAAGGGTTTCTTCAGAAGGACCATCCGGCTGAAGCTGGAGTATGATAAGTGTGAACGCAACTGCAAAATCCAAAAGAAGAACCGCAACAAGTGCCAGTACTGCCGATTTCACAAGTGCCTCTCTGTGGGCATGTCCCACAACGCTATTCGGTTTGGTCGGATGCCTCAGGCGGAGAAGCTAAAGCTAAAGGCAGAAAGCAAGATGGTGGAGAAAGAGGTGGCAAGCCCCATGCTGGCCGACCACAAGATTCTGGTCAGACAGATCCACGAAGCCTACATGAAAAACTTCAACATGAACAAGGCGAAAGCTCGGCTCATACTCACCGGAAAGACCAGCAAGCCGCCTTTCATCATTCACGACATGGAGACGTTCCAGCTGGCAGAAAGGACGTTTGCGGCCCATATGGTAAACAATGACTGTCCGGAGCCCGAGAGTGGCCTTCAAGAAGGGGCGGTGGTTCCGGCTGCGGGGTGTAGGGAGCTCCAGCAGAGGGAGGCTGAAGCCAGGCTCTTCCACTGCTGCCAGAGCACCTCGGTGGAGACTGTCACCGAGCTGACGGAGTTCGCCAAGGCGGTGCCGGGTTTCCAGAGCCTGAATCTGAATGATCAAGTGACTCTCTTGAAGTACGGTGTTTACGAAGCCCTCTTCACGCTCCTGGCCTCCTGCATGAACAAAGACGGCCTCCTGGTGGCCCGCGGTGGAGGCTTCATCACCCGAGAGTTCCTCAAGAGCCTCCGGCGGCCATTTAGCGACATGATGGAGCCCAAATTCCAGTTTGCCGCACGCTTCAACTCCCTGGAGCTGGACGACAGTGACCTGGCCCTTTTTGTGGCAGCCATCATCTGCTGCGGAGaTCGCCCTGGCCTGGTGGAGGTGCCTCTAGTGGAGCGGCTGCAGGAAAGCATCGTTCAGGCACTACGGCTCCACCTGCTGGCCAATCACCCGGACGACACCTTCCTCTTTCCCAGACTGCTACAGAAACTGGCCGACCTCCGAGAGCTGGTCACCGAGCACGCGCAGTTGGTTCAGGAAATCGAGACATCAGAGGACACGTCGCTGCACCCGCTCCTGCAAGAGATATACAGGGACATGTACTGAGAAGATGGCACACGATCAGGGACAGGGACATGTATTAGAATATGTATGTATGCCACTCTAAACTGGGTGTCCATACATATTTACTTAAACTATCAAGCATATCACTGTACTGTAATTTGCTTAATGTGCAGCTTCTATGGGTGCACACTGCTGTGATCTGCAGTGTTTGCATTAAGACTCTTAAGTCTttttactggaacaaaaccTAATGAAATTATTTGGGGGGGGAGGCAGCTATTGTAGGTGGCATGCCTGCTTCCATGAAAGGGGACACAGAGGGGAACAAAGTGTTTGATCTTACACCGTAGATGTGTcgagatatatttttttaaatgcattgattTTTAACTTGGAGCACCCAAATGCTATGGAGTGGGTTCTGGATGCCAGCTTTTACTCTACACACTGAACAAAAGGTGAATAGGGAGAAGGCTATGCAAATGTGCCTAGCATTTAAAATGGGTGCACACATCTAAAAGCTACCAGGATGTGACTGCTGCAGTTACTCAATATTAATTTTTTCCTGTGAACAAGTTGAATTGTGGTAAAAGAAGCATAGAAGTTATAACATTTTTAATCTTTGAGGCAACTGAAATGTTTGTTGTGCAATATAGGCACTACAACTAAATACCGGGCATATTCCTAATATTTTGGATATTTAGTGCATATGATATGTTAATTTAAGTCACTTGGATTTAGTTAATATAATTGTCATGTCCTTTCAGTGTCTACTAGCTGTGCCACATCTCCATTTTGAGCTTAGTGGTTGAAGAAACTTAGTATTCACCAAGTGCCATAACGTTTCAGTGCCTCAGCTCATATTTTAACCGCACCTTATACATTCACCTCATAAAAAATCTAGTTAGACTTTTTTTCCAAGTAGAAACAAGTTTAACTTTTTAGTGTTGGATCAGGGAATGTTCTCACATCATAAATCATGAACAATAGTGCATTTTTAACAGGCAATGACCTAAAAAAAATACCTTACTTCTTCTGTAAGCAGCCATCATTGTAATTTCATGTGTAATATATTAATTTTATTACTTTACCCTACTGATAAATACCAACACAACATGATAGCTGCCCAACCTATTTTTTCagaatttgttttgtacaaATCCTGTTGTTAAGATACATTATTGGCCAGTTAATATTTTGATCACAAACTCTGATGATAAGAtggtttatgttttattttgtaaatataaCAGAAGAATGTGCTGACCACAGTGAAAGGGATGTATGTATCTGCATGCAGAAAAACAGGCATCAAAAAGAGGAGGTGATTGCCTCATTTGCTGTCTGTATTATTGAAACTGTTTATATTTTATCATGTACAGTAgtgtacaattaaaaaaaatgcatttgctgTTTCAATAAAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08701 NR1D3; nuclear receptor subfamily 1 group D member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309843 lncRNA downstream 107163 17007945 ~ 17009590 (-) False slc37a3
TU309844 lncRNA downstream 107772 17007749 ~ 17008981 (-) False slc37a3
TU309840 lncRNA downstream 109753 16952943 ~ 17007000 (-) False G228363
TU309837 lncRNA downstream 109753 17004002 ~ 17007000 (-) True G228363
TU309834 lncRNA downstream 166947 16914607 ~ 16949806 (-) True G228360
TU309887 lncRNA upstream 2140 17137270 ~ 17138275 (-) True G228401
TU309917 lncRNA upstream 86075 17221205 ~ 17222228 (-) True G228423
TU309936 lncRNA upstream 108335 17243465 ~ 17243980 (-) True G228439
TU309981 lncRNA upstream 137818 17272948 ~ 17275477 (-) True G228474
XR_005638072.1 lncRNA upstream 267118 17402248 ~ 17402832 (-) True LOC120552976
XM_039791082.1 mRNA downstream 300 17114008 ~ 17116453 (-) True cdpf1
XM_039792344.1 mRNA downstream 4310 17109537 ~ 17112443 (-) True LOC120553682
XM_039791557.1 mRNA downstream 96018 17007724 ~ 17020735 (-) True slc37a3
XM_039791555.1 mRNA downstream 129198 16983903 ~ 16987555 (-) True sapcd1
XM_039791552.1 mRNA downstream 137718 16972532 ~ 16979035 (-) True prdm4
XM_039791800.1 mRNA upstream 61811 17196941 ~ 17207454 (-) True atxn10
XM_039792327.1 mRNA upstream 73496 17208626 ~ 17220355 (-) True LOC120553673
XM_039792328.1 mRNA upstream 77518 17212648 ~ 17220357 (-) False LOC120553673
XM_039791154.1 mRNA upstream 87204 17222334 ~ 17234693 (-) False trim24
XM_039791152.1 mRNA upstream 87204 17222334 ~ 17234692 (-) True trim24
TU309744 other downstream 293321 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 1324900 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 2028424 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 2055324 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 3307074 13809607 ~ 13809679 (-) True trnak-cuu_13
TU309971 other upstream 159992 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 695542 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 695542 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 1234545 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 2303387 19438517 ~ 19438599 (-) True trnal-cag_18

Expression Profile