RNA id: XM_039791725.1


Basic Information

Item Value
RNA id XM_039791725.1
length 832
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC120553379
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18946158 ~ 18948515 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCGGTTTGTGTGACAGTCTGACAAACCCTGGACTGCTTCAGAGACAGACTGGGATCTGCTGGCTACTGGCTGACACAACAGAAAGTAATCACCCTACACAATGTATCACCTGAGGGTGCTTCTCCTCACGCTACTTGTGTTGCTGCGCTGTGTTACCGCTGCCCCAAGCTACAGGTACTTCAGTCCCAGCTCATCCAGCGAGCGGGAAAGTGCTCTCCCAGACCGTGACAGCTGGTTAGCTCCTGGGCTAATTTCCAACCCATTCCTTGGCCTCATGGGTACACGGCCGCAGAGGGGGCTCACAGCTATGAACAGCCACCACATAGACAAGAGGAAGTGCAACACAGCCACCTGCGTCACCCAAAGGCTAGCAGACTTCCTGGTCCGCTCCAGTAACACTATCGGTACCGTCTACGCCCCAACCAACGTGGGATCGGCCACCTACGGCAAGAGGGACATACTGCCGCCTCCCAGCTACCTGCCTCTCTAATATCGACTGAGGAACCTCCACCAGCACTCCCAGTGCTATGATGATATAACCACACATCTTATGTAACAATGAGTGTGAGAATGAAGTTACTaacggtggtggtggtgatgatgattacGAACTGAGTTTTCTTGCTTATTTTATAAACTTTAAGAAACAGTGCCTTTAATTTAAACCATCAAAGTCAATAtatggttgtttttttctggcTTTGTGTGCTGTAATGCTGTTCCACAATGGCATGATGTGAATATAACGACaagtaaataataaaagaataaataaaagaaaaaagacgtAGAGCCATATGAGATAAATGTTATCTGTTGATTTTGATAATA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K08039 IAPP; islet amyloid polypeptide

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638159.1 lncRNA upstream 37277 18905236 ~ 18908881 (+) True LOC120553381
XR_005638160.1 lncRNA upstream 48631 18892174 ~ 18897527 (+) True LOC120553383
TU310196 lncRNA upstream 90844 18850047 ~ 18855314 (+) False LOC120553630
TU310155 lncRNA upstream 206674 18738484 ~ 18739484 (+) True G228622
TU310143 lncRNA upstream 268593 18676351 ~ 18677565 (+) True G228611
TU310389 lncRNA downstream 404489 19353004 ~ 19355518 (+) False LOC120553164
TU310390 lncRNA downstream 404489 19353004 ~ 19354472 (+) False LOC120553164
TU310391 lncRNA downstream 404489 19353004 ~ 19355361 (+) False LOC120553164
TU310392 lncRNA downstream 404489 19353004 ~ 19355361 (+) False LOC120553164
TU310405 lncRNA downstream 471857 19420372 ~ 19420829 (+) True G228787
XM_039791722.1 mRNA upstream 4183 18930270 ~ 18941975 (+) True LOC120553377
XM_039791723.1 mRNA upstream 4183 18930270 ~ 18941975 (+) False LOC120553377
XM_039791721.1 mRNA upstream 4183 18930551 ~ 18941975 (+) False LOC120553377
XM_039791724.1 mRNA upstream 18192 18914965 ~ 18927966 (+) True LOC120553378
XM_039791726.1 mRNA upstream 34396 18901550 ~ 18911762 (+) True LOC120553380
XM_039791098.1 mRNA downstream 2768 18951283 ~ 18959848 (+) True pyroxd1
XM_039791099.1 mRNA downstream 2768 18951283 ~ 18959848 (+) False pyroxd1
XM_039791100.1 mRNA downstream 12570 18961085 ~ 18974640 (+) True etnk1
XM_039791260.1 mRNA downstream 362990 19311505 ~ 19346280 (+) True LOC120553161
XM_039791271.1 mRNA downstream 404468 19352983 ~ 19355551 (+) False LOC120553164
TU310117 other upstream 414990 18530165 ~ 18531168 (+) False srr
unassigned_transcript_1495 other upstream 1355995 17590091 ~ 17590163 (+) True trnak-cuu_15
TU309802 other upstream 2023335 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 2114915 16771058 ~ 16831243 (+) False cald1a
TU310402 other downstream 461975 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 510568 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 683432 19631947 ~ 19808412 (+) False LOC120553210
XR_005638132.1 other downstream 683432 19631947 ~ 19808412 (+) False LOC120553210
TU310593 other downstream 1033733 19982248 ~ 19985648 (+) True G228924

Expression Profile