RNA id: XM_039791727.1


Basic Information

Item Value
RNA id XM_039791727.1
length 2924
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC120553384
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21269874 ~ 21293236 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cGTCAATCAAACGCTAACGCCGTAGCGTGCCCGGAGCGTTTGATGAGACCGATGGTCCCAGGAAGCAGCGCtgcttattttatgttttatagcGATAAAGACGGGGGAAAGCGTTGCATTTCGAGGTCAGGGGGTACAAATGAAGAAAGTGAAATAATGTCAAATAATTTCAGGTTAGCTTGTTGTCAACGTCAGAGcgcttttgttatgatttggcGTTGATATCGGCGATGTTTACCGTGCAGCCCGTTAAGTTCCTCTGAAGGGTGGCACAGTAACGTTAAGTGGAGCCTTTAGCCTTCGACTGCCTAAATATTAGGCAGAAAAATACGAAAATTCACATTATTTCTCATATATCGTGTGGTGGCGCCAAGCCAGTAATTGACTCTGGAGCAGGACACGGAGGATAGTATGGCCATGACGGTGGAGACTGCAGCTGCACTTCCCATGAGCAATCACACCCGAGAGAGGGTGACTGTGGCCAAGCTGACACTGGAGAACTTCTACAGCACTCTACTCACCCAGCACGAGGAGCGGGAGATGAGGCAGAAGAAGCTGGAGAAGGCCATGGACGAAGAGGGCTTGCCAGATGAGGAGAAAGTAATGCGCCGCTCGCAGCATGCCCGTAAGGAGACTGAGTTTCTTCGACTGAAGAGGACGCGACTTGGCTTGGATGACTTTGAGTCCCTTAAAGTTATCGGACGGGGTGCTTTTGGAGAGGTCCGCTTGGTGCAGAAAAAAGACACGGGGCACATTTACGCCATGAAGATTTTGAGAAAAGCGGACATGCTGGAGAAAGAACAGGTGGCTCATATCCGGGCGGAGAGGGATATTCTGGTGGAGGCGGACGGCGCCTGGGTGGTCAAGATGTTCTACAGCTTCCAGGACAAGAGGAACCTCTACCTCATCATGGAGTTCCTTCCTGGAGGCGACATGATGACCCTGCTGATGAAGAAAGACACTCTGTCTGAGGAGGCCACCCAGTTCTACATCGCAGAGACAGTTCTGGCCATCGACTCCATCCACCAGCTGGGCTTCATCCACAGAGACATTAAACCAGACAACCTGCTGCTGGACTCCAGGGGACATGTGAAGCTGTCCGATTTTGGCCTGTGTACGGGACTGAAGAAGGCTCATCGCACAGAGTTTTACAGGAACCTGACGCACAACCCGCCCAGTGATTTCTCCTTTCAAAATATGAACTCCAAGAGGAAAGCAGAAACCTGGAAGAAGAACCGGAGGCAGCTGGCTTATTCTACTGTTGGAACGCCAGACTACATTGCTCCGGAAGTCTTCATGCAGACGGGATACAACAAGCTGTGTGACTGGTGGTCTCTGGGTGTCATCATGTATGAAATGCTCATCGGTTACCCACCCTTCTGCTCTGAGACGCCGCAGGAGACATACAGGAAGGTGATGAACTGGAAGGAAACCCTCGTCTTCCCCCCTGAAGTCCCCATCTCAGAGAGGGCTAAAGACTTAATATTAAAGTATTGCACCGACGCTGAGAACAGGGTTGGAGCTGTGAGTGTGGACGAGATCAAGAATCACCAGTTTTTTGAGTCTGTGGACTGGGAGCACATCAGGGAGCGGCCAGCAGCCATCTCCATTGAAATCAAGAGTATCGACGACACCTCAAACTTTGACGACTTCCCCGAATCCGACATCCTTCAGCCAGCCAATGCAACGGAGCCAGATTTCAAATCGAAGGATTGGGTGTTCCTCAACTACACGTACAAACGCTTTGAGGGTCTGACTCAGCGAGGCACCATCCCCACATACATGAAGGCAGGGAAGGCCTGACACGGGGAGACAGGGTtgcggaggaaaaaaaacagacgtTTACGGACACAGGGTCGGGCCGTGGAGCCCCGCTGGCGCTGAAGGCTGCGCTGTCAGCCTCTCAGTATAAATTTAACCCTCATCACAAGTTATTTAGGTCTGCTCAGCCGCCGCAAGAACGCCAAGTGCTTGGAAAATTAAGGAGCGTTACCGCATTACCTCGGTTGTTCGTATCGTATACACGTGACGTCTTTAGCCATAGCTCTCAGGCCAGCTCACTAACTAGGGCACTAAATCAGCATACCTGCATGTTCAACAGCATATTGCTTCTGGAGAGGACTTTCTACTGCCCAAAGGCAACTGTTGGAATGAGGATTAAGTACAAATCCCTGCTTGAACATCTTCACAGCGATAGTTTCTACAGCACCCTTGTGGCTAAATTAGCTCTGATGCAAACATCATTTCAAATACTGAAGACAAGCTCTATACACTGTAGTCAGAAAGATTAGTGAGTAAGAACAGGTATCGCTCACTTGTTCTCGCCCATACTGTTATACTCTGTGGATTTTGAAGGAAAGTTCCAGCATGATTTTTAGGGTTTTGGCTCACTTTTGGCTTTGTATTCAAGAGTTGCTCCCACTAACAAAGATAGCATCCATTTAAAAGCGCAACGTGTGAAAATCtttcatttcaatttctttCTAGCAGTGAGAAGCATCTTGTTATGGCAGTAGAGCCCGGTGAAACCTCAGCATCAGCTTTTCTTTATGTGAAAAGAGACAACTGCTGGGGATTGTGGTGGTGCTAGTTAGCACAATGCTAGCGGATCCCAATGGAAGCTCAATTGGCATCACATTTGTAGAGAAAAAGTTGAGAAAGTGAAGGGTGACAGCATTGTATTGCTATGCCTTAGGTTTAAAGACTAGGCTTGTAGACCAAtgtttagccatgctagcggtgAAGCTATTAATATTGGATGGATCGCCATGGCGTTTGGTACCCGCATTCATGTACCCGCCAAGATGaaatgtaataactttggtgatcctctagcaccaccagcGGGTCATaatgtccaatactttggtttgtgACCAAATAtatgcaagccatgatgtctttctctctctcatgggtgggcc

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08790 STK38, NDR; serine/threonine kinase 38

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311069 lncRNA downstream 5062 21264501 ~ 21264812 (-) True G229296
TU310999 lncRNA downstream 70615 21198468 ~ 21199259 (-) True G229248
TU310982 lncRNA downstream 207438 21019259 ~ 21062436 (-) True G229235
TU310983 lncRNA downstream 207438 21019259 ~ 21062436 (-) False G229235
TU310905 lncRNA downstream 402345 20867300 ~ 20867529 (-) True G229172
TU311129 lncRNA upstream 157227 21450463 ~ 21453152 (-) True G229351
TU311131 lncRNA upstream 157227 21450463 ~ 21453152 (-) False G229351
TU311122 lncRNA upstream 167840 21461076 ~ 21461460 (-) False slc38a2
TU311121 lncRNA upstream 167901 21461137 ~ 21461460 (-) False slc38a2
TU311185 lncRNA upstream 349279 21642515 ~ 21642768 (-) True G229390
XM_039792116.1 mRNA downstream 8172 21234254 ~ 21261702 (-) False LOC120553569
XM_039792115.1 mRNA downstream 8172 21234254 ~ 21261702 (-) False LOC120553569
XM_039792114.1 mRNA downstream 8172 21234254 ~ 21261702 (-) False LOC120553569
XM_039792113.1 mRNA downstream 8172 21234254 ~ 21261702 (-) False LOC120553569
XM_039792112.1 mRNA downstream 8172 21234254 ~ 21261702 (-) False LOC120553569
XM_039791881.1 mRNA upstream 2277 21295513 ~ 21301256 (-) True med21
XM_039792072.1 mRNA upstream 42301 21335537 ~ 21365108 (-) False gas2l3
XM_039792073.1 mRNA upstream 42301 21335537 ~ 21353473 (-) True gas2l3
XM_039792251.1 mRNA upstream 167901 21461137 ~ 21474602 (-) True slc38a2
XM_039792250.1 mRNA upstream 225389 21518625 ~ 21571113 (-) False slc38a4
XR_005638087.1 other downstream 124341 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 311654 20957657 ~ 20958220 (-) True G229199
TU310704 other downstream 1147535 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 1430572 19811245 ~ 19839302 (-) False etv6
TU311312 other upstream 477852 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 477900 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 1811524 23104760 ~ 23239573 (-) True G229716
TU311825 other upstream 2398785 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 2406461 23699697 ~ 23700198 (-) True G229907

Expression Profile