RNA id: XM_039791730.1


Basic Information

Item Value
RNA id XM_039791730.1
length 3008
RNA type mRNA
GC content 0.41
exon number 14
gene id LOC120553386
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24773501 ~ 24788753 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCAGCTGTATAAACAACGTGATAGAACATTATTCGTGGGACTGTCCTAACATCGGTTAGACGCAGATACAATATCTGACAGCTCTGAAACGCCACAGAAGAAATTGAAGATGGACCATAAGGTGTTTAATGATCCCATCCACGGGACGGtggagttacacccacttctcATCAAAATCATCAACACACCTCAGTTCCAGAGACTGAGAAACATCAAGCAGCTTGGAGGGGTCTACTTTGTTTACCCTGGAGCATCCCACAACCGCTTTGAGCACTCCATTGGGGTGGCGCACTTGGCAGGTCAACTTGTTGAGGCTCTGCGTACAAGACAGCCGGAACTCGACATCGATGACAGAGACGTCCTTTGTGTGAAGATTGCTGGTCTCTGCCATGACCTGGGACATggacccttttcccatctgtaTGATAAAATGTTCATACCCAAAGTACCATATCCACCAGGTCCACTAGGTGATAAAATGGCAAAGTGGAAGCATGAAGAAGCCTCTGTAGAGATGTTTGACCATCTGGTGAAATCTAATAATCTGGAGCTGGAGATGAAGGACCATGGTCTGAATCTGCCCGAGGACTTGGATTTCATCAAAAAGTTGATTGAAGGACTGAGTGACCCTAATGCAGTCCAGTGGCCATATAATTGTCGGCCAAAGGAAAAATCCTTCCTCTATGAAATCGTGGCCAACAAAAGCAACGGCATTGATGTGGACAAGTTTGACTACTTTGCCAGGGACTGCTACCACCTGGGCATGAAGAACAACGTTGACCATCTCCGCTTCATGCAGTTAACCAGAGTGTGTGAGGTGGACGGGCTGAATCACATCTGCAGTAGAGACAAGGAGGTGGGCAATCTGTATGACATGTTCTACACCAGGAACTGTCTCCACAGAAGAGCCTACCAGCACAGAGTGAACAAGATCATAGAGTATATGATTGCAGAGGCCTTTTTAGAAGCAGACGGGCATATCAAGATTGAAGGCTCAAAAAGGCAGATGTTCACTCTCTCTACAGCCATAGATGACATGGAGGCCTACACCAAGCTGACAGATCATGTGTTTGAACAAATACTCCACTCTTCCTCCACGGATCTGGCTGACGCAAAGAAGATTCTGGAAAAGATCATCTCTCGAAAACACTACAAGTTTCTGGGTGAAATCAGGCCTGGACCAATCCCAACCAAGAAGGTGATTGGTGAATTGGAAAAGGAATTGGCTGCCTTGGACTTCATAGTTTTAGTCACTACTTTTGACTATGGAATGAAAGACAAGGACCCCATCAAGAATGTGTATTTCTACAGCAAGAGAAACCCTGACACAGCATTTAAGATCACCAAAGACCAGGTGTCCAAGCTTCTCCCAGAATGCTTTTCTGAGCAGCTGATCGGGGTTTACAGTAAGAAGACTGATGACCAGAGTCTGAAGGCTGCCAGGAATCACTTGGACCAGTGGTGTGAAGATAAGGGCTTGCCAAACCTTCAGTATGGAGACACTGCAACACCATAAATCATCCCTGGGGGAAATATCCAGAACAATCCACCAGATGTTTCAGAAAATAGAgattaaaagtgaaaaaagaaatcaaacacTCCCTGCTACTTATAGGTTCATTATGATTGATTCTATAAGGTGAGTATGATCACAGTGTAGTACTAGACACCACTTTTCTCCAAAAACAAATGATTTCAGAGTACCAGGATACATTACCGCATGTTTGGGTCATATACTCAGTTTCTTTAGAGCCCTGTTCAACATTGAACACATATCTATGTTTTAGTTTGATCATTAAACACACTTTAAATGTCTTGGTCTAAACTGAAGCATATTTTAGATAATTGTTTTTTATCCATCACATTTAGGCTTCTCTGTGTATTCTGTGTGTATTCCTTATAATCAGGGCACGCTATAAAGCATTACCCACATGGAGTGGACTTAAAGTGAATATTTAAATTGTGGCTTAGggattttaaatattattaagGTGTTTGGTTTTTATGTTAATCTGTGTGAATTGATGTGATAATCTGATTATATATTATGGGAAGCTCTGACTTGGGAATCACTTTGTATTGCATCTATCAAATGAAATAAGAGTTATGATTACTATAACCATTATGATAACAGTATACTCTAGCCCagtggtgtcaaactcattttagttcatGGGCCACATCCCCCTAATCTGATCTCAAGTGGGCCGGACCATTAAACCActccagaaagatcagaaactgtatctgccacagagttacttgtcagcttgatgttggcaaacgcaAGTCGCTTCTTCTACGACGGTGTTTTAAGGCCGttgtaggaaaaaaataatgttacagacccgggagagaggggtaatattccgaaaaaaaagataaagtcGTACATTTTCGGGAAAAAGAACTCTGATAttttctgagattaaagtggtaaatttGTTATTCGTTTCTTCTctgcaattttcacactttgcaagttcatccagtgggcctgattggaccctttggcGAGCCGGTTCTGGCCCACGGGCcgtatgtttgacacccctgctctagCCTATATCACTGTTTCTCACTGTACTCGTACTATATAGCTCAACTTGCTTTGTTCAATGTAACCATTAGAGTGTGATTAAGATAAACTTTCAATATCGTTGTGTTTTGCTCATAGAGTGAAACTGTATTagattattaatatatatttgggGATGTAAAGGGAAAcctatctaatctaatctattaGAACCTTTCAACTGTATCCCTGATGAGACAGGTTGATGTTTGTCCTTGTGTGGTTTAACTTTTCCAACAGATGAAATCATAACACTTGTGTTTTCAGCTGGGATGATAATTCATCTTTTATTCATGGAACATGTTGTCAAAGAAAAAattgggaatttttttttttaaatgtgtattagCAAAGAAAGGCCTTAAAATGATAAAAGGAAAAGCAATCAATCCTGAATGGAAAGAGAAATAAAGGGAAGTGTCTCAGTGC

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312111 lncRNA upstream 287984 24482310 ~ 24485517 (+) True G230109
TU311993 lncRNA upstream 509436 24260059 ~ 24264065 (+) True G230011
TU311974 lncRNA upstream 657380 24112965 ~ 24116121 (+) True G229994
XR_005638178.1 lncRNA upstream 678336 24088025 ~ 24095165 (+) True LOC120553514
TU312222 lncRNA downstream 7200 24795953 ~ 24798741 (+) True G230192
TU312293 lncRNA downstream 396059 25184812 ~ 25191943 (+) True G230249
TU312317 lncRNA downstream 563124 25351877 ~ 25352174 (+) True G230260
TU312312 lncRNA downstream 574146 25362899 ~ 25373424 (+) False LOC120553523
TU312316 lncRNA downstream 587594 25376347 ~ 25377601 (+) True G230259
XM_039791731.1 mRNA upstream 23673 24732196 ~ 24749828 (+) True LOC120553387
XM_039791728.1 mRNA upstream 138236 24620865 ~ 24635265 (+) True LOC120553385
XM_039791095.1 mRNA upstream 168554 24597350 ~ 24604947 (+) True LOC120553040
XM_039792452.1 mRNA upstream 202180 24566241 ~ 24571321 (+) True nopchap1
XM_039792239.1 mRNA upstream 294738 24384898 ~ 24478763 (+) True chst11
XM_039791230.1 mRNA downstream 41445 24830198 ~ 24835745 (+) True LOC120553142
XM_039792167.1 mRNA downstream 81194 24869947 ~ 24992165 (+) True scube1
XM_039792168.1 mRNA downstream 81194 24869947 ~ 24992164 (+) False scube1
XM_039792169.1 mRNA downstream 99090 24887843 ~ 24992165 (+) False scube1
XM_039792315.1 mRNA downstream 222481 25011234 ~ 25110425 (+) False mpped1
TU312075 other upstream 460563 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 886077 23887337 ~ 23887424 (+) True trnay-gua_62
TU311874 other upstream 924877 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 1249534 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 1583983 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 1583983 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 2280324 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 2814252 27603005 ~ 27603702 (+) True G230842

Expression Profile