RNA id: XM_039791733.1


Basic Information

Item Value
RNA id XM_039791733.1
length 2908
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC120553389
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16854992 ~ 16866194 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTATCGTCCATCCAATGGGTGTTGTTGCAATGGTGGTGTCAGTGGGACATTGAATGACTTTGGCTCCATCGAAAATATCTAGTTGTATTAATAATTTGATTCATAAACCGCGAGCATGGAGGCTCTTATCCCCGTAATAAACAAGCTCCAAGATGTATTCAACACAGTGGGAGCGGATATCATACAACTGCCGCAGATAGCAGTGGTGGGGACTCAGAGCAGTGGTAAGAGCTCAGTGCTGGAAAGCCTGGTGGGCAGGGACCTGCTGCCCCGTGGGACTGGTATCGTAACCAGGCGACCTCTCATCCTCCAGCTGGTCAATGTAGATCCTGGAGATGCAAGGAAAAATGATGACAGTGGCAGAGAAGGTGACGAGTGGGGCAAgtttctgcacacaaaaaatCAGATCTTCACAGATTTTGAAGAAATCAGGCaagaaattgaaaatgaaacagCACGAATATCAGGCAATAATAAGGGGATCAGCGATGATCCCATTCATCTGAAGATATTTTCTCCTCACGTTGTCAACCTCACTCTGGTGGATCTGCCGGGAATTACTAAGGTGCCCGTGGGTGATCAGCCTAATGACATCGAGGTTCAGATAAAGGATCTAATCCTGAAGCACATCTCCAACCCCAACTGCATCATCCTGGCTGTCACTGCGGCTAACACAGACATGGCCACCTCAGAGGCCCTCAAGGTGGCCCGGGAGGTCGACCCTGAcgGCAGGAGGACACTGGCTGTGGTGACTAAGCTGGACCTGATGGACGCCGGCACTGATGCTATGGACGTACTGATGGGCAGAGTCATTCCTGTCAAACTGGGCCTCATTGGAGTAGTCAACAGGAGCCAGCTGGACATCAACAATAAAAAGTCTGTGGCCGATGCCATTCGTGACGAACATGCTTTCCTGCAGAAGAAGTATCCCTCTCTCGCCAACAGAAACGGAACCAAATACCTGGCCCGAACCCTTAACAGGTTACTGATGCATCACATCCGAGACTGCCTCCCTGAGCTGAAGACACGGATCAACGTCCTGGCAGCCCAGTATCAGTCCCTGCTCAGCAGCTACGGCGAACCTGTGGAAGACCAAAGTGCCACCTTGCTCCAGCTCATCACCAAGTTCGCCACAGAATACTGCAACACCATAGAGGGCACAGCCAAATACATCGAGACGGCAGAGCTGTGTGGTGGAGCCCGAATTTGTTACATATTCCATGAGACTTTTGGCAGAACATTGGAGTCTGTGGATCCTTTGGGAGGACTCAGCACCATAGACATCCTAACCGCCATAAGGAACGCAACAGGCCCACGTCCGTCCCTGTTTGTGCCCGAGATTTCCTTCGAGCTGTTGGTGAAGAAGCAGGTGAAACGCCTGGAGGAGCCCAGTTTGCGCTGCGTGGAGCTGGTCCACGAGGAGATGCAGAGGATCATCCAGCACTGCAGCAACTACAGCACACAGGAGCTGCAGAGATTTCCCAAGCTGCATGAGGCCATTGTGGAAGTAGTCACTTGCCTCCTGAGGAAGAGACTGCCTATCACCAATGAGATGGTGCATAACTTGGTGGCAATAGAGCTGGCCTACATCAACACCAAACATCCCGACTTTGCAGATGCCTGTGGGGTCATGAATAACAATATAGAGGAGCAAAGGAGAAACAGGATGAGGGAGCTGCCTGCTGCCGTGCCCAGGGATAAGGCTCCAATAACAGGACCCCAGGGTGAGCAGGACGGCACAGGGAACTGGAGGGGGATGCtgaagaaaggagaggaagcCCCCGGCTCCGGACCTGGAAGCCCCCTTAAAGGAGTTGTCAATCTGCTTGATGTGCCCGTGCCGGTTGCCAGGAAACTGTCGTCACGTGAGCAGCGGGACTGTGAGGTCATCGAGCGCCTCATCAAGTCTTACTTCCTCATCGTTCGCAAGAATATCCAGGACAGTGTGCCGAAGGCAGTGATGCACTTCCTGGTCAACCATGTGAAGGACAGCCTCCAGAGCGAGCTTGTCGGCCAGCTGTATAAATCTGGCCTCCTCAACGATCTGCTGACTGAATCAGAGGACATGGCCCAGCGGCGCAAGGAGGCCGCAGACATGCTACAGGCGTTGCAAAAAGCTAGCCAGGTGATCGCTGAGATCAGGGAAACACATATGTGGTGAAAAGTCAACAAAGGGAGCTGAACCTGATCCGCTATCTCCTCATGCTGAAAGGACTGACGCTTTATGCACGCATCATGTCTGAACAATAAGTTTAGATTTGTAACCATGGAAATGCACTGTCCTGATCCCTGCTCAAAGTAGGTATATTGGCTCACACGCTACCTGAAAGAAATGTaggtaattatttatttaaaatatgtggTGTTGTCTGGAATACATGAAAATGCACTACTTATTTTagctaatgttaaaaataagatTTTGTGCAGTCAAAGGCAACttacttttcatttttaacaGACTGTGGTTAACCagtgtgaaaatgaaaaatgtttaaGTCATTTTGGCAGCTCCACAAATCATTACATCGTGTTTGGACTCTAGTTAGGAGTAGCTTTGATGTGTCTGGAACCATAGAAGTCATAGTGTAACAATACAGCAGGGATTAGAATTCAAATACACTAGTTGCAGCAAATGTTAGTCCTCTTGCCTGTGTACATACTCcatcaactttatttttttttgcactgtTGTCACCACACTGTACTGTATAGAAAGTCCCTCACCCTGACACTATATTGCTATCAGAATACTTGTGTAATTGTGTGGATAATGTTTCAGATTGCTGCAGTAAGTCTTACTATTATATACATATCGCTGCCTACATGTAAAATGTATGGTGCACTGTGGTTCTTTGTGTATGGTTCCCAGAAGAATAAATTGCGGTATTTTATTGCCAGTTGAA

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309755 lncRNA downstream 23753 16824829 ~ 16831239 (-) True G228295
TU309741 lncRNA downstream 107952 16746743 ~ 16747040 (-) True G228290
TU309734 lncRNA downstream 318699 16536018 ~ 16536293 (-) True G228283
TU309647 lncRNA downstream 630843 16216115 ~ 16224149 (-) True G228221
TU309501 lncRNA downstream 1323553 15531131 ~ 15531439 (-) True G228120
TU309834 lncRNA upstream 48413 16914607 ~ 16949806 (-) True G228360
TU309840 lncRNA upstream 86749 16952943 ~ 17007000 (-) False G228363
TU309837 lncRNA upstream 137808 17004002 ~ 17007000 (-) True G228363
TU309844 lncRNA upstream 141555 17007749 ~ 17008981 (-) False slc37a3
TU309843 lncRNA upstream 141751 17007945 ~ 17009590 (-) False slc37a3
XM_039791234.1 mRNA downstream 202859 16635871 ~ 16652133 (-) True LOC120553145
XM_039792229.1 mRNA downstream 525384 16322115 ~ 16329608 (-) True ifrd1
XM_039791328.1 mRNA downstream 690088 16063870 ~ 16164904 (-) False foxp2
XM_039791329.1 mRNA downstream 690088 16063870 ~ 16164904 (-) False foxp2
XM_039791334.1 mRNA downstream 690089 16063869 ~ 16164903 (-) False foxp2
XM_039791736.1 mRNA upstream 1637 16867831 ~ 16868673 (-) True LOC120553391
XM_039792197.1 mRNA upstream 3542 16869736 ~ 16880178 (-) True dhx57
XM_039791547.1 mRNA upstream 16617 16882811 ~ 16912629 (-) True strip2
XM_039791549.1 mRNA upstream 16617 16882811 ~ 16912627 (-) False strip2
XM_039791548.1 mRNA upstream 16617 16882811 ~ 16912627 (-) False strip2
TU309744 other downstream 31560 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 1063139 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 1766663 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 1793563 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 3045313 13809607 ~ 13809679 (-) True trnak-cuu_13
TU309971 other upstream 428928 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 964478 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 964478 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 1503481 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 2572323 19438517 ~ 19438599 (-) True trnal-cag_18

Expression Profile