RNA id: XM_039791735.1


Basic Information

Item Value
RNA id XM_039791735.1
length 1100
RNA type mRNA
GC content 0.49
exon number 16
gene id tnnt2e
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16833664 ~ 16854874 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCATAGACAAGACATGTGGGCACATGATGGGCAGGGCCGAATCAAGTGTGCTTTTTGGTTGGGGATTATACAGGAGGTAAGATCAGAGCATGACCTCTGGGTGCATGGCAGCAAACAGGCAGGTAATTGGAATCCGAGATGTCtcaagaagaagaagttgtCGAGGAGATGTTATATGGATGTCAAAGTTGAGGTTGAAGTGGAAAAACCTGCACCTCAAGTAGAAGAACCTCCTACGGCAGAAGAGCCTGCAGAAGAAGATGACTCCAAACCCAAACCAAAGGCATTTGTTCCGGTTATAGCTGTGCCGAAGATACCCGATGGGGACAAAGTCGACTTTGATGACATCCACAGGAAGCGTCAGGAGAAGGATCTGACCGAGCTGACGTCTCTGATCGAGGCCCACTTCATTCAGAGGAAGAAGGACGAGGAGGAGCTCATTGCTCTCGTTAACAGGATCgAGAAGCGTCGCACTGAGAGGGCTGAACAGCAGAGGATCCGTTCTgagcaggagaaggagaggcagGCTCGTGTTGTTgaagaaaaggagaggaaggagctggaggaggcaCGTAAGAAGCAGGATGATGATGCCAAGAAGAAGAAGGCTCTGACAAACATCACTCAGCAGTATGGTGGTGTCCAACAGAGGCAAGAAGGAAAGAAGGGAGCCAAGAagcagacggagagagagaagaaaaagaagatccTGGCTGACAGAAGGAAGCCTCTCAACATCGACCATCTCACTGAGGACAAAGTGAAGGAGAAGTCCAATGAGTTGTGGCAGTGGCTGATGACGCTGGAGGCTGAGAAGTTTGACCTCACCGAGAAACTGAAGAGACAGAAATATGAGTGTGTTGAAGGGCCTAAAACCGATCCTCGGACATTGCAGCAGGAACAAAGCTGGGCGACTACAACGCAGAAGACCAATCAGCTCCTGGCTTGCATTCAGAACCAGGAAAGTGCCAAAGGAAGAGGCAAGGCCAAGGGCAGGGTGAGATAAATGTAAACATCAGCAAGAGTTCTCCTAGGAAGCATCTGAAAATGAGCAGCAGTATTTACTTCCGTGACATTGTGTGcttaaacaataataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309723 lncRNA upstream 1543 16831604 ~ 16832121 (+) True G228272
XR_005638114.1 lncRNA upstream 72503 16477207 ~ 16761161 (+) False LOC120553146
XR_005638116.1 lncRNA upstream 72503 16477207 ~ 16761161 (+) False LOC120553146
TU309727 lncRNA upstream 220959 16612502 ~ 16612705 (+) True G228276
TU309726 lncRNA upstream 267526 16565665 ~ 16566138 (+) True G228275
TU309770 lncRNA downstream 11436 16866310 ~ 16867780 (+) False stmp1
TU309794 lncRNA downstream 25704 16880578 ~ 16916928 (+) True morn2
TU309795 lncRNA downstream 27964 16882838 ~ 16887563 (+) True G228328
TU309792 lncRNA downstream 62126 16917000 ~ 16919571 (+) True G228326
TU309827 lncRNA downstream 152928 17007802 ~ 17010730 (+) True G228353
XM_039791239.1 mRNA upstream 2421 16771059 ~ 16831243 (+) False cald1a
XM_039791235.1 mRNA upstream 2421 16771061 ~ 16831243 (+) True cald1a
XM_039791237.1 mRNA upstream 2421 16771063 ~ 16831243 (+) False cald1a
XM_039791238.1 mRNA upstream 2421 16771063 ~ 16831243 (+) False cald1a
XM_039791242.1 mRNA upstream 2421 16771065 ~ 16831243 (+) False cald1a
XM_039791738.1 mRNA downstream 11440 16866314 ~ 16867796 (+) True stmp1
XM_039791550.1 mRNA downstream 25402 16880276 ~ 16882520 (+) False morn2
XM_039791551.1 mRNA downstream 25637 16880511 ~ 16882520 (+) False morn2
XM_039792432.1 mRNA downstream 125132 16980006 ~ 16980757 (+) True LOC120553739
XM_039791556.1 mRNA downstream 146071 17000945 ~ 17005314 (+) True cdkn1d
XR_005638118.1 other upstream 2421 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other upstream 2421 16771062 ~ 16831243 (+) False cald1a
XR_005638140.1 other upstream 1635834 15168604 ~ 15197830 (+) False LOC120553256
TU309000 other upstream 2828771 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 2828815 14002363 ~ 14004849 (+) False LOC120553485
TU309802 other downstream 64789 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 735217 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 1675291 18530165 ~ 18531168 (+) False srr
TU310402 other downstream 2555616 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 2604209 19459083 ~ 19459154 (+) True trnaq-uug_5

Expression Profile