RNA id: XM_039791739.1


Basic Information

Item Value
RNA id XM_039791739.1
length 1658
RNA type mRNA
GC content 0.51
exon number 10
gene id gdi2
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23899241 ~ 23913813 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCCCTCAGGCGCCTGACGCTGAACCGCTGCCCCTTCTCATTTCCAGCCCCGCAGATCTCCATTTTCTTCTTTCCAGATATTCGGGAGCAGAGGAGAAAAGACTTgaaaaaatgaatgaagaaTACGACGTTATCGTTCTGGGCACCGGGCTTACGGAATGCATTTTATCAGGCATCATGTCGGTGAAGGGGAAGAAGGTTCTGCACATGGACCGCAACTCCTACTACGGAGCCGAGAGTGCCTCCATCACGCCTCTTGAAGATCTCTACAAGCGCTTCAGCATTCCGGGCAAACCTCTTGAGTCGATGGGAAAAGGCCGGGATTGGAACGTGGATCTCATCCCTAAATTCCTTATGGCCAACGGTCAGCTGGTGCGCATGCTGCTGATCACAAAGGTGACTCAGTACCTGGATTTCAAAGTGGTAGAGGGCAGCTTTGTGTACAAGGGGAGCAAAATCCATAAAGTCCCCTCCACTGAGGCCGAGGCTCTGTCATCTGGTCTCATGGGGTTGTTTGAGAAACGGCGCTTCAAAAACTTCCTTCAGTTCATTTCCAACTTTGACGAGAGCAACCCCAAAACCATGGAAGGCATCGACCCCCAGCAGTCGACTATGAgggacattttcaaaaagtatAACCTGGGCCAGGACGTCATCGACTTCACCGGCCACTCCCTCGCCCTCTACCGCACAGACGAATACCTGGATCAACCTTGCATCGAAACTATAAACAGGATCAAGCTTTACAGTGAGTCTCTGGCCAGATACGGCAAGAGCCCATACCTCTACCCACTGTACGGCCTGGGAGAACTGCCACAAGGGTTTGCCAGGCTGAGTGCTATCTACGGGGGGACGTATATGTTGAACAAGCCCATAGACGAGATCGTGGTAGAGAATGGGAAGGTGGTGGGAGTCAAGTCTGAGGGAGAGATCGCCAGGTGCAAGCAGCTGATCTGCGACCCCAGCTACGCCATGGACCGCGTCACCAAAGTGGGTCAGGTGATCAGAGTCATCTGCATCTTGAGTCACCCGATAGGCAACACTGGCGACGTCAACTCGTGCCAGATCATCATCCCCCAGAATCAGGTCAACAGGAAACATGACATCTACGTTTGTATGATCTCCTTTGCTCACAACGTGGCGGCACAAGGTAAATATGTTGCCATCGTCAGCACCACAGTGGAGACAAACGACCCCGAGAAAGAGATCAAGCCGGCCCTGGACCTACTGACGCCCATTGAGCAGAAGTTTGTCAGTATTAGTGACCAGTATGCACCCACTGACATGGGCACTGACAGCCAGATTTTCATCTCCCGTACGTATGATGCCACCACTCACTTCGAGACCACCTGTGACGACATCAAAGACATCTACAAGAGGATGACGGGCTCGGAATTTGACTTTGCCGAGATGGAGCGCAAGAAGCAGGACACCTTCGGTGATGCCGCAGACTAGAGGCGAAAGCATCCGCAACACTCCTGATATCAAAGAACAACGCTGCCGACAACTGAAATCTTACAAAAAATAGAAAACCTACACAAAACATGTACACACCTATGGGCTGGCTGATCATCCAAGTCTATGGTTTGCCCCTTTTTAGGAAGtccatgatatatatatatagggagaTATGATAGAGTATTGTTGGACAGGGTTT

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311778 lncRNA upstream 219933 23667703 ~ 23679308 (+) True G229841
TU311754 lncRNA upstream 313742 23579721 ~ 23585499 (+) False G229821
TU311755 lncRNA upstream 313742 23579721 ~ 23585499 (+) True G229821
TU311602 lncRNA upstream 458701 23436565 ~ 23440540 (+) False kcnc2
XR_005638073.1 lncRNA upstream 641380 23232498 ~ 23257861 (+) True LOC120552982
TU311911 lncRNA downstream 1998 23915811 ~ 23916388 (+) True G229938
TU311915 lncRNA downstream 30245 23944058 ~ 23945640 (+) False LOC120553686
TU311919 lncRNA downstream 33880 23947693 ~ 23948538 (+) True G229945
XR_005638093.1 lncRNA downstream 56134 23969947 ~ 23971613 (+) True LOC120553072
TU311951 lncRNA downstream 80753 23994566 ~ 23994835 (+) True G229974
XM_039791740.1 mRNA upstream 1343 23886747 ~ 23897898 (+) True ankrd16
XM_039792269.1 mRNA upstream 54348 23833018 ~ 23844893 (+) False adm2a
XM_039791278.1 mRNA upstream 192273 23686014 ~ 23706968 (+) True ppp6r2a
XM_039792347.1 mRNA downstream 10343 23924156 ~ 23933876 (+) True asb13a.1
XM_039792348.1 mRNA downstream 10343 23924156 ~ 23933876 (+) False asb13a.1
XM_039792349.1 mRNA downstream 10343 23924156 ~ 23933602 (+) False asb13a.1
XM_039792350.1 mRNA downstream 20487 23934300 ~ 23944186 (+) True LOC120553686
XM_039792096.1 mRNA downstream 295806 24209619 ~ 24249507 (+) True mkln1
unassigned_transcript_1527 other upstream 11817 23887337 ~ 23887424 (+) True trnay-gua_62
TU311873 other upstream 50617 23833031 ~ 23848624 (+) True adm2a
TU311874 other upstream 50617 23833031 ~ 23848624 (+) False adm2a
TU311875 other upstream 50617 23833031 ~ 23848624 (+) False adm2a
TU311876 other upstream 50617 23833031 ~ 23848624 (+) False adm2a
TU312075 other downstream 396123 24309936 ~ 24312938 (+) False LOC120553083
TU312157 other downstream 706999 24620812 ~ 24778258 (+) True G230148
TU312620 other downstream 2124474 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 2458923 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 2458923 26372736 ~ 26381109 (+) False mrps33

Expression Profile