RNA id: XM_039791750.1


Basic Information

Item Value
RNA id XM_039791750.1
length 3986
RNA type mRNA
GC content 0.46
exon number 16
gene id rpap3
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19495419 ~ 19504306 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACTGACACCGTAGTTTAACGTTAGTTTCCTTTTCGGTCGGTTGTTTGCAGACTTTTACAAATGGACATGTGAATAACATTTATTTGTAGTAAGTAATCTGTTTGTAACAGACGATCTTTGGCTACGCCCAGCGCATGCTCAGTAGCGCAAAGGCTGCTGGTACTCGGCTGTCATGGCTCCGAACGTAAACAGAAATCTGTGAATAACGACGCATGCTGTTGTAGTATTTAGCCAAATTAACTGCAGTTGCATTTTATCTGTATTTATCAGCCGGAGAAACAAGTGCCAGGTACTTTACAAGGTTCACGTAGCTACAGAATCACTTGCATCTATTTGATTTGCTCTCAATGTTTGGTATTTCTGCTAGCTTAAAGCTAGCTGTTAGCCGCAAAAGCATGACAGCGTGATTCTCGAGTTTTCCTCTTGGCTGCGACACCGACTTCAAGGCTACAACGTACAGCAACACGTGTTAAGAATCTCTCCAAAACAAATGTCTGTTTCACAGGGAATAACATGTCCGGGGGAAACAAAGCCATTGAGTTACAGCTTCAGATGCGGCAGAATGCGGAGGATTTGCAGCGCTTCATGACGGAGCTGGGGAGCTGGGAGGAAGACATAAAGAAGAAGGACGAGGAGCTGAGGACGGGAGGACTTCCGGAGGCCCAGAAGCTTCCACCTGTGCGCAACAaagactacaaaacaaagatgagggagaggaggaagaagaagaagaaggagccAACAGGCAATGGTGACGCAAAGGCTCAGGAGCCCAGTGAAGCCTCGAGGATAAAAGCATACGACTATAGATCATGGGACAAGTTTGACGTGGACAAAGCTTTGACAGAGATGGATAAGGAGGAAAGTCCTGCAGAGTCAAATGAGTCTGACTCTGAGGAAGCGACAGCTGATCAGGAGAAAGCGCTGGCTGAGAAAGAAAGGGGTAACGCGTTTTTCAAAGATGGGAAGTACGACGAGGCTATTGAGTGTTACACCAGAGGGATGTGTGCAGATCCTTACAACCCTGTGCTTCCCACAAACCGAGCCACCTCCTTCTTCAGACTAAAAAAGTATGCTGTGGCAGAGTCCGACTGCAACTTGGCTATAGCTCTGGACAGCAACTACTTCAAAGCGTACGCGCGAAGAGGAGCAGCACGGTTTGCACTGAAGAAATATGAATCTGCATTGGAAGATTATGAGATGGTTCTCAAGCTTGACCCCGGGAACGCAGAAGCACAgaatgaagtaaaaaaaatcaaagagACTCTCGGAGATCAGGCACCAGCCGTCCCGAGTGAAGCCGCGCAGCCACAGGAGACCCCCACGGCGGACCCCGAGCGGCAGAGGCTGATGGAGGAACAGCAGAGACGACAGGAGGCGGCTTTACAAAAAGACAGAGGGAATGCTTATTTCAAAGAGGGGAAGTATGAAGCAGCTGTTGAGTGCTACAGCAGAGGCATGGAGGCGGACAGCATGAACGTCCTACTGCCCGCCAACAGAGCCATGGCCTTCATCAAGCTGGAGAAGTAtaaggaggcagaggaggacTGCACCAGAGCCATTTCTCTGGACAGTACTTACTCCAAGGCTTTCCACCGTCGTGCCACCGCCAGAGGGGCTTTAGGGAAACTGGAGGAGGCCAAACAAGATTTTCAGGAGGTGTTGAAACTGGAACCAGGGAACAAGCAGGCCCTGAATGAGCTCCAGAAACTCCAgattGACGTGGATTCCGGCGGCCTTCTCCAAACCCCCGACGGCACACAGAGGAGAACAGTTCAGCCGATAGACAAACCAACACATCTGCGGTCAACTAAACCTCTGAGGAGGATCGACATTGAGGAAGTGAGTGGAAAGGTGACCGTGTCCGAGACGGAGTCGGGCGGGTCCAAGTCCCTGATCCAGGAAGTGACGAGGGAGGCCGGGGACCAATCCTCTCCGCTGTCGACTTCGCCCAGCGCCAAGATGATCAAGATGGAGGAGCAAGCAGAAGTCCCCTCACGCTCGTCTGAGCAAGTCCCTGCTAGCAGACAGCCGGAACAACCCGAGCAGGGGGAAATGGTTCCTCCTGCTGCTGGAGCATCAGTCAGCCACTCCTCCACAGTAGATGAGCTGCCTTCTCCACCCACCAACAGCTTCAAGCTGGAGGCCGACTTCCGCACCATCGGGAACCAGCCTGAGGTGATCTACAGATATCTGAGGCAAATCAAGCCCGAGGCGTACGCAACCATTTTCCACAGCTCCCTGGAGCCTCACATTCTCAATCAGATCCTGAGGACGCTGCACGGTTTCTATATCAAGAATGAAGCCCCAGCCGCCACGCTGGAGATCCTCAGGAGTCTAGCGAGTGTGAGGCGCTTCGACATGGCCGTCCTGTTCCTGTCGTCCCCGGAGAAGAAAGTGCTTAAAGAACTGTTTGACTTCCTCCACCAAGCGGAGCTGGAGGGATCATCTGTCACAGCTTTACAGAAGAAGTACGGTGTGTGACGCTGCTAATTCTATAGACTTTTAGTTTCAACACACAGTGCTACATTATTTTCCAAACCTATAATCTAATACAGAATAAATGTCCATTCACTACACTTGTGCTATGGCCACGTGGAAATATGATGTCATCTACTTTCTGTcttcattgcattttttattttttttaacttatggaaattcaaacagtttagatttttatttggaaCGTGTTGCATTTTAGTATTAaggctgatttaaaaaaacaacaaccggaGACCACCAGTGTAGAGTCATGTTCCTTATGCAAAAGCTGATGTCATTATTCATCATACTTGAAAAAAATCTGCGACTTTACGGTGTAAATGTATATGTTTAACTATTTACTGCACAACTCTTTCTATAAATGTATGAGCATGCAATGTGGAAAAATAGTTTTTGTCAGATAACTATATCTTATAGGCCCTATAGgatatagtaatataatataggAGATTAACCAGAAGCCAAAGTTTAAGGATAgctttggtatttttcaacctggaccctattttcccatgtttttgtgtctaagtgactgatggaaacaacattttaatgaaatgagtCCAGTAGTGACCACTGCTGCAGCCAGGAGCTGCGATACAGGCTGCAATGTAATTCCTTTCTCCACCATCAatttccgtccactaaaagtgctgtttttgccactgacaggctggctccgattattctaagtgtctgagaACATTATGGAAAAGATCCCTACAggaatagacctttttgttaaagagtaaggtCCATAGAAAAAGCCCTGAAATCGCCATATTagccaaactcaccagactctaTTTAAATAAACGCACAGATTGTTGGAGCAGTGGATagccaagacggcttttgacagttttattttgtctctgtCGACTTTGgataaagtgtgttttacgatgataaaattactgtttatttacatggagtctggtgggtttggctaTAGCAGTTTTTGGGGcggtttcatgttaaacaaaaaggatcttactgtttaacaaaaaggtcgaCCTCTGTacggatcctttccataatgtcagCCAGCCTGTccgtggcaaaacaagcacgtTTTGTGGACGGAAATTGAAGGTGTGCAATTGCCTGTTAACGTTACGTTTCACCTTGTTTCACCTTGCTTAAAACTGGACCCATTTCAGATCGTTGCTCCCATCAGTCACAGACAATGGAAGATGGGGTCcaggttagaaaaaaaaacaactaagtTACCCTTGAAGAAGTGTGAATTTCCAACTTTTCCAATATcttttgaatgcagcacaagtATGGATTGGTCTCTGTGAGTACTCTGCTCCGTTAGAATGTTCCTCCCATTCTAACAACACAAAATGTATTGACTATACCGGCTCAGTTTGACTGGAGACTGGAGAGAACTGTGTGAGAGAGGAGTCAGAAGTATTTTGCAAATACAGTTCTCTTTTTCAGAAACTGAACAAATAAAGGTGTATTTTATAA

Function

GO: NA

KEGG:

id description
K23002 RPAP3; RNA polymerase II-associated protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310514 lncRNA downstream 12266 19482867 ~ 19483153 (-) True G228871
TU310513 lncRNA downstream 12802 19482172 ~ 19482617 (-) True G228870
TU310512 lncRNA downstream 13942 19481224 ~ 19481477 (-) True G228869
TU310491 lncRNA downstream 14335 19480821 ~ 19481084 (-) True G228851
TU310495 lncRNA downstream 80817 19414330 ~ 19414602 (-) True G228855
TU310528 lncRNA upstream 2759 19506683 ~ 19507560 (-) True G228881
TU310530 lncRNA upstream 10179 19514103 ~ 19514434 (-) True G228882
TU310533 lncRNA upstream 46693 19550617 ~ 19569359 (-) True G228885
XR_005638134.1 lncRNA upstream 213298 19717222 ~ 19718412 (-) True LOC120553214
TU310618 lncRNA upstream 349040 19852964 ~ 19905943 (-) True G228946
XM_039791045.1 mRNA downstream 66990 19418241 ~ 19428429 (-) False LOC120553005
XM_039791044.1 mRNA downstream 66990 19418241 ~ 19428429 (-) True LOC120553005
XM_039791046.1 mRNA downstream 88061 19396856 ~ 19407358 (-) True arl1
XM_039792053.1 mRNA downstream 133309 19355872 ~ 19362110 (-) True slc5a8
XM_039791265.1 mRNA downstream 141930 19346382 ~ 19353489 (-) False dnai7
XM_039792228.1 mRNA upstream 42702 19546626 ~ 19569057 (-) True lrig3
XM_039791390.1 mRNA upstream 229142 19733066 ~ 19806755 (-) False LOC120553212
XM_039791388.1 mRNA upstream 229142 19733066 ~ 19806755 (-) True LOC120553212
XM_039791379.1 mRNA upstream 302890 19806814 ~ 19839350 (-) True etv6
XM_039791380.1 mRNA upstream 304115 19808039 ~ 19839349 (-) False etv6
unassigned_transcript_1502 other downstream 42391 19452946 ~ 19453028 (-) True trnal-cag_24
unassigned_transcript_1501 other downstream 42869 19452469 ~ 19452550 (-) True trnal-cag_23
unassigned_transcript_1500 other downstream 43346 19451988 ~ 19452073 (-) True trnal-cag_22
unassigned_transcript_1499 other downstream 47273 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1498 other downstream 48316 19447021 ~ 19447103 (-) True trnal-cag_20
TU310604 other upstream 229178 19733102 ~ 19807098 (-) True G228934
TU310602 other upstream 307321 19811245 ~ 19839302 (-) False etv6
TU310603 other upstream 307321 19811245 ~ 19839302 (-) False etv6
TU310704 other upstream 563112 20067036 ~ 20122339 (-) False rerg
TU310933 other upstream 1453733 20957657 ~ 20958220 (-) True G229199

Expression Profile