RNA id: XM_039791751.1


Basic Information

Item Value
RNA id XM_039791751.1
length 1357
RNA type mRNA
GC content 0.45
exon number 6
gene id atp23
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19504380 ~ 19507591 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGTCCATTACCTTTGACCTTTTGCGACCACGTGATCTACAAAACAGTGatgacctagctagctagctaaccaggGGATTCATGCATACATTTCCAAATTGTTGACAACATTTCCTACAATGGACCAGTCTAAACAAGAGGAGGAATATGGATACGATTTATTCCCGGAGAGAAAGACGGGGAATAAGACGGGGAAATCCATCGCGCAGAGCCTGTTCACTTTCAACCACAAGTGTCAGGTCATGTTGCAGTTCGCAACGGAAACTAGTCCGTATGCCAAACTCCTCCTCAGTGCCATGAAAAGTTCCGGATGCAAAGTGTTGAAAGAGCGCCATTTCTCCTGTGAGGACTGTGACGGGACGGTCAGCGGTGGCTTTGACGCAGATTCTTCTCAAATCGTTTTGTGTCAGAACAACATCCACCAGCAGTCCCACATGAACCGAGTGGTCACACATGAGCTCATTCATGCCTTTGACCACTGCCGCGCCCACGTGGACTGGTTCAACAACTTCAGACATCTAGCTTGTTCTGAGATTCGGGCAGCTAACCTCAGTGGAGACTGCTCCTTTAGCAATGAAGTATCCAGATTCAACTTTGGCTTGAAGCAGCATCATCAGGAGTGCGTTCGAGGCCGTGCCCTTCGCTCCATCCTAGCTGTGAGGAAAATTAGCCGAGAGGAGGCGGTGAAAATAGTGGATGAAGTCTTTCACACGTGTTTCAACGACCACGAACCGTTTGGACGAATCCCGCACGGCAAGAAGGATGCTGGCTTTGCCTACAGAGATTATGAGAACAGAGATCGATATTATGCAAACCTTTAGTGTCGTCACATTCTCATTTAACTCCCAAGGGCGCTGTGACTGGCGGCGATGCTGATAGAAGCTTGGCAGCGCCAGGGCCCCGGGTCAACCTAAAAGCCTCAACAAAATGACAGTGTGTCGAAAACGATCAAAGCCCTTCAGAAGGGATTTTCAGAGAATGATGATTTGTCCTTGGAACAGGAGGATACAGTACATTTCATCTTCTACCTTCATTTTTATACTAATTCTGTATAAAGGGATTGAAAGGGGTCATTTTGCTGTGAGGGTAAATTATTAGACGAGGCCCCCGTGACTTatttgtcattagtttttatttgatcAATGGGTGCTTTTAAGGAAATGcaggatttcatttttgtccatCAATGTTTGCTGTTAAAGTCTGTTGATGACAAACAAAGATGTATTTCTCTGACTGTTTGCTCTTCATCGTGTTGCCACATTGACCTCCACTCATTTCTTGTAAATAGAGCTGATAGTGCTTAAATTAAACCAAATCAACTTGTGTTTTAATTAAAGTTTGATTCCTCTGAAAA

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K18156 ATP23, XRCC6BP1; mitochondrial inner membrane protease ATP23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310405 lncRNA upstream 83551 19420372 ~ 19420829 (+) True G228787
TU310389 lncRNA upstream 148862 19353004 ~ 19355518 (+) False LOC120553164
XR_005638191.1 lncRNA downstream 16484 19524075 ~ 19559043 (+) True LOC120553618
TU310544 lncRNA downstream 186442 19694033 ~ 19819189 (+) False LOC120553210
TU310546 lncRNA downstream 186442 19694033 ~ 19839382 (+) False LOC120553210
TU310548 lncRNA downstream 186442 19694033 ~ 19732007 (+) False LOC120553210
XR_005638133.1 lncRNA downstream 208671 19716262 ~ 19717346 (+) True LOC120553213
XM_039791747.1 mRNA upstream 9057 19487602 ~ 19495323 (+) True LOC120553398
XM_039792512.1 mRNA upstream 21228 19478917 ~ 19483152 (+) True LOC120553799
XM_039792514.1 mRNA upstream 21228 19478917 ~ 19483152 (+) False LOC120553799
XM_039792513.1 mRNA upstream 21228 19478917 ~ 19483152 (+) False LOC120553799
XM_039792511.1 mRNA upstream 25105 19473150 ~ 19479275 (+) True LOC120553798
XM_039792015.1 mRNA downstream 86822 19594413 ~ 19627713 (+) True LOC120553510
XM_039792017.1 mRNA downstream 87461 19595052 ~ 19627713 (+) False LOC120553510
XM_039792016.1 mRNA downstream 87573 19595164 ~ 19627713 (+) False LOC120553510
XM_039791382.1 mRNA downstream 124346 19631937 ~ 19648221 (+) False LOC120553210
XM_039791381.1 mRNA downstream 124347 19631938 ~ 19669110 (+) False LOC120553210
unassigned_transcript_1503 other upstream 45226 19459083 ~ 19459154 (+) True trnaq-uug_5
TU310402 other upstream 90676 19410490 ~ 19413704 (+) True G228784
TU310117 other upstream 973212 18530165 ~ 18531168 (+) False srr
unassigned_transcript_1495 other upstream 1914217 17590091 ~ 17590163 (+) True trnak-cuu_15
TU309802 other upstream 2581557 16919663 ~ 16922823 (+) True G228335
XR_005638131.1 other downstream 124356 19631947 ~ 19808412 (+) False LOC120553210
XR_005638132.1 other downstream 124356 19631947 ~ 19808412 (+) False LOC120553210
TU310593 other downstream 474657 19982248 ~ 19985648 (+) True G228924
TU310663 other downstream 639487 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other downstream 663128 20170719 ~ 20173399 (+) False LOC120553749

Expression Profile