RNA id: XM_039791752.1


Basic Information

Item Value
RNA id XM_039791752.1
length 3831
RNA type mRNA
GC content 0.49
exon number 42
gene id cacna2d1a
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11503618 ~ 11604688 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcccgcacgcacgcacacacacacacacacacacggctgaaCCAAAAAAAGCACACTCCTCAACTCCACCGGTGGGGGGGACACAGACACCAGATGAGATTTGTTTCCAAACGCGCACCGATGGCGGTGTGAGGCGTTTGGCTGAAGTACGCACGGCGTCGTGGATTTGTGAAAGATTTTTGTGCATCTTCTTCCTGTTTGGATCCTGGTTGCGGGGAAATAAACAAAGCTATGGATTACTCAGTCTGCTTACTTTTACTCCTCTCAACCATTTCGTCTGTGTCGACCGGACAATTCCCAACAGCGCAAATGATAAAGGAATGGGTTGACCAGATGCAAAAAGAGTTGATCACATTAACAGACACATCCAGTGGTATGGACAACCTAATACAGATATATCACAAACACAGACCTCACTTCAGCGTGGAGTCCAACAATGCAAGGCAACTGGTGGCGACGGCTGCTGGGAATATAGAGAAACTGCTGGCTAACCGCTCCCGAGCACTAAAGAGGCTGGCATCAGAAGCAGAAAAGTTTCAAATGGAGCACGAGTGGAGGGACAACAGTGAGGTCGACAAAATGGTTTACTACAATGCCAAAGATGACCTTAATCAGACAGAGGATGGAAAGGGAAGGAAGAACCGATATCTTCCTGATGATTTTGAGATAGACCCCGACTTCAAACGACTCGTCTCGTACAACACCACTGCCGTCCACATCCCTACGGACATATATGAAGGCTccACCATAATTTTGAATGAGCTAAATTGGACAGAGGCCTTGGAGGACACTTTCCGAAAAAACAAAGAGGAAGATCCCTCAATCCTCTGGCAGGTGTTTGGCTCTGCCACCGGATTGGCTCGGTACTACCCAGCATCCCCTTGGATCGACTCGAGCAATTCAGCCAATAAGATCGACCTCTACGATGTGCGCAGGCGACCGTGGTACATTCAGGGGGCAGCGTCACCCAAGGACATGCTGATCTTGGTGGATGCGAGCGGCAGCGTTTCGGGTCTCACCCTGAAACTCATCCGAACTTCCGTCAACAAGATGCTGGAGACCCTCTCTGACGATGACTACGTAAATGTGGTCTATCTCCCTTCGTTCAATGACAAGGCCATGTACGCATCATGCTTTGAGAACCTGGTGCAGGCCAACGTCCGCAACAAGAGGATGCTGAAAGATGCTGTGCAGAGCATCACGGCCAAGGGTATCACCAACTACAGAGGCGGCTTCGAGCTGGCGTTCGAGCAGCTCGCACAGATGAACGTGTCAAGGGCAAACTGTAACAAGATTATCATGCTCTTCACTGacggaggagaagagagggcaGAGGAAATCTTTGAAAAATACAACCCAAAGCAGGCGGTGCGCatctttacattttcagttgGTCAACACAACTACGACAAAGGACCAATACAGTGGATGGCCTGCGCTAATAAAGggTACTACTATGAGATTCCATCTATAGGCGCCATCAGGATCAACACTCAGGAGTACCTGGATGTTTTGGGCAGGCCTATGGTAAAGGCTGACAGAAAGGCCAAGCAGGTTCAGTGGACCAACGTCTACCTGGACGCACTGGAGCTTGGCCTGGTGATCACTGGAACTCTGCCTGTCTTCAACAAGACCAACACAGGctcaaagAAATCTCAAAACCAGCTCATCTTGGGAGTTATGGCCATTGATGTCTCCCTGGATGATATCAAGAGACTGACGCCTCGCTTTACTTTTGGACCAAATGGCTACTACTTTGCCATTGACCCCAATGGATACGTGCTGCTCCACCCTAATCTCCAGCCACTGACTGCCAAGTTTCATGAACCTGTTACGCTGGACTTCCTGGATGCAGAGCTGGAGAATGAGATCAAAGTGGAGatgagaaaagaaaTGATCGACGGTCTAACAGGGAATTACACAATATCTACATTGGTGAAATCCCAAGATGAGCGCTACATTGACTTAGGCCAGAGGATGTACACCTTTGCACCAGTGAAGGGGACGGATTACAGCCTGGCCCTGGTCCTTCCTGACTACAGTATGCATTACATCCGGGCCAACATTGCAGACACAATCACCCAGGCAAAATCGTTTTTGGGGAAAGATGTTTCTGAAAGCCTGATGGCAGACAAGTTTGATGAATATGGATATACATTTATTGCACCGAGGATGTACTGCAAGGACTTAAAGCCACCtgacaagaacaaaaacaacactgagTTCCTAATTGAGTTCAACAACTACATTGACACAAAGACTCCAAACAACCCCATGTGTAATGTGGAACTGGTGAACCGATTGCTCCTGGATGCTGGTATCACCTCATCTCTGATCAAGTATTGGAAAGGAACCGAGTTGCAGCATGGTGTCTTGGCCAGATTTGTTGCCACCGATGGAGGGATCACACGGGTCTACCCCAAAAGTGCTGGGCTGTACTGGAAAGAAGAAGCAGAGACGTATGAGTCCAGTTTCTATAAGAGAAGTTTGGACAATGATCTGTACGTCTTCACTCCAACACCTTACCTCACTAAAGAGAACACAAGTGACGACTCTGTCCTGGTGAGCAGAGCAGTAAATCTCAACATTGATGGCATCATACTCAAACCAGCGGTGGTAGGCGTGAAGTTGGACATTAGTGCCTGGATGGCAAGCTTTATCAACATCACACAGAAGATCAATTGCAATGATGAGATCTGTGGTTGCCAGCGAAACGATGTGTATGTAGACTGTGTCATTCTGGATGATGGGGGCTTCCTTGTGATGTCCAATCGAGATGAATATATTGATCAGATCGGGCGTTTCTTTGGTGGTATCGACCCGATCCTCATGGTGAATCTGGTCAACTCGTCCCTGTTCACCTCTAAGAAGACCTTCGACTACCAGTCGCTCTGTGAcccagagaaagagagcaagGCGGCTGCGGGCCTGCGATCCGTCTATGTGCCTACAATTGCAGACATTTTGAATTTAGGATGGTTCGCGACAGCTGCGGCCTGGTCAATGCTGCAACAGTTACTGGTCAGCATCACATTCCCCAATTTCCTGGACGCAGCCGAGATGGATGATGAAATGTCAGACGCCATGCTCAAAGAGGTCTGCATCACAGAGCAAACTCAATACTACTTTGAGAACAACGACCGGTCTTTCAGAGGCACAATCGACTGTGAAAACTGCACCAgGCTCTACCATGCTGAAAAGCTGCCCAAGACGAACCTGGTCTTTATCATTGCTGATGCAAAACTCACCTGCTCGTCCTGTGACACCAAGCCGTTAATACAGGATGAACAGCAGTCTAATGGTCCTGATCCCTGTGAAATGGCTCAGAATCCGCGCTACAGAAAAGGGCCCGCAGTCTGTTTTGATAACAATGAACACGATGAGGCCATGTGCCGAAGGAGCGCAGGCTCCCCATTGGCTTCCTCTCTGCTCATGTTACTGCTGCCACTGTTCATGTGCTGTCTCGGGAGAAGGACCCTGACTGTGGCGGGGCGTCCGGACTGAGCCCGTCCCTTTGGCTGATGGCGGCCCTTCAGCTGGTTCTGCTCTGGGTTTTGACTGGCTCCAGACCCCATGCCATCCTGTCATGACCTCTGAAAATCCTCATcgcgccctctctctctctccccttctgcTATCTCCAAAATGGCAACCAGCTGCCACCGAAATGACGAACGCCCAATGAGAAGCGCttgtaacaaacaaacaaaaacctgtGAGCCCCCACATCCTGCCAGTTTCTCCTTTTGATAACTTCACTTTCAGGGGTTTCTCAAAGTGATTTTACCAGGTGTAAGGGTACAAGTGACGAAAGAAATGTTTAATGGAAGA

Function

GO: NA

KEGG:

id description
K04858 CACNA2D1; voltage-dependent calcium channel alpha-2/delta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308317 lncRNA downstream 2704 11498844 ~ 11500914 (-) True G227295
TU308286 lncRNA downstream 43595 11458797 ~ 11460023 (-) False hgfa
TU308245 lncRNA downstream 235829 11267586 ~ 11267789 (-) True G227248
TU308217 lncRNA downstream 250763 11252624 ~ 11252855 (-) True G227222
TU308213 lncRNA downstream 412001 11091390 ~ 11091617 (-) True G227218
TU308338 lncRNA upstream 207795 11812483 ~ 11822704 (-) True G227314
TU308429 lncRNA upstream 226341 11831029 ~ 11831677 (-) True G227384
XR_005638138.1 lncRNA upstream 290955 11895643 ~ 11906818 (-) True LOC120553249
TU308452 lncRNA upstream 290958 11895646 ~ 11906820 (-) False LOC120553249
TU308456 lncRNA upstream 290958 11895646 ~ 11906820 (-) False LOC120553249
XM_039792505.1 mRNA downstream 21040 11458581 ~ 11482578 (-) False hgfa
XM_039792504.1 mRNA downstream 21040 11458581 ~ 11482578 (-) True hgfa
XM_039791245.1 mRNA downstream 55176 11269994 ~ 11448442 (-) True snd1
XM_039791050.1 mRNA downstream 493513 10987010 ~ 11010105 (-) True LOC120553011
XM_039792185.1 mRNA upstream 12667 11617355 ~ 11676831 (-) False pcloa
XM_039792188.1 mRNA upstream 12667 11617355 ~ 11676831 (-) False pcloa
XM_039792187.1 mRNA upstream 12667 11617355 ~ 11676831 (-) False pcloa
XM_039792186.1 mRNA upstream 12667 11617355 ~ 11676831 (-) False pcloa
XM_039792184.1 mRNA upstream 12667 11617355 ~ 11676831 (-) True pcloa
TU308180 other downstream 522359 10980198 ~ 10981259 (-) True G227197
TU308019 other downstream 980656 10513494 ~ 10522962 (-) True G227082
unassigned_transcript_1485 other downstream 1307185 10196347 ~ 10196433 (-) True trnay-gua_61
unassigned_transcript_1484 other downstream 1307748 10195784 ~ 10195870 (-) True trnay-gua_60
XR_005638146.1 other downstream 2748786 8572959 ~ 8754832 (-) False ppfia2
XR_005638189.1 other upstream 19321 11624009 ~ 11676832 (-) False pcloa
XR_005638137.1 other upstream 234256 11838944 ~ 11848941 (-) False cracr2ab
TU308500 other upstream 680238 12284926 ~ 12288154 (-) True G227429
TU308872 other upstream 1915577 13520265 ~ 13529778 (-) False LOC120553470
TU308919 other upstream 2046974 13651662 ~ 13659272 (-) True LOC120553486