RNA id: XM_039791764.1


Basic Information

Item Value
RNA id XM_039791764.1
length 4581
RNA type mRNA
GC content 0.45
exon number 11
gene id cpsf6
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13444584 ~ 13474258 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cattgTTTGTGGCTCAGTTAGTCAGTGTTGCTCTGCACCGCCGGGCGGAGAGAGCGACGGGAAAGAGGAAAATGGCGGACGGCGTGGATCACATCGACATCTACGCCGACGTAGAGGAGGAATTCAACCAGGAAGCTGACTACCCAGTCCACGAACAGATTGACCTGTATGATGATGTAATATCCCCATCAGCCAACAATGGTGATGCTCCAGAAGACCGCGACTACCTGGACACACTGCCTACACCAGGTGGCTCAGAGGGAGGGAAGAGTTCTCAGCCCAATGTGGTGTACACTTACACAGGCAAAAGGATTGCCCTGTACATAGGAAACCTCACATGGTGGACGACAGACGAGGACCTGACAGAAGCTATCCGGTCAGTAGGCATCACAGATGTGCTGGAGATCAAGTTCTTTGAAAACCGAGCCAATGGCCAGTCAAAAGGGTTTGCACTGGTGTGTGTGGCCTCGGAGGCATCATCCAGGAAGTTAATGGAGCTGCTGTCGAAGAGGGAGCTCCATGGTCAGAATCCCATCGTCACGCCGTGCAACAAACAGTCCCTCAGCCAGTTTGAGATGCAGTCACGCAAAAGTTGGTGTGGAAGTGCGCGATCAGATGGTACCCAGTCAGGCCAGATGTCTGGGGAAGGTAAAGCTGGCCCCCCTGGCGCTGGCCCTCGTGGGGGTTTCCCCATGGGTCGAGGCAGAGGCAGGTTTCCTGGACCACCTGGCCCAGGTGGAGACCGCTTCCCTGGTCCTGTTGGGCCTGGAGGACCGCCACCACATTTCCCTGGTGGAATGCAGGGTCCCCCACGTCCCCCTCCCGGTCCACCTGGTCCTCCAGGGCCTCCACCTCCTGGCCAGggcctcccccctcccctcgcTGGTCCTCCAAATCGTGGGGACAGGCCTCCTCCCCCAGTTCTCTTCCCTGGTCAGTTTGGCCAGCCTCCAATGGGACCCCTACCCCCAGGCCCACCTCCTCCAGGTTATGGCCCTCCCCCTGGTCCCCCACCCCCTCAACAGGGCCCACCACCCCCAGGACCCTTCCCTCCACGCCCCCCTGGCCCCATTGGGCCCCCCATGGCTTTGGCGCCACCTCCACACATGCCAGGTCCCCCACCAGGTGGACCACCACCAGCACCCCATGTCAACCCtgcctttttccccccacctGGCAACAACAACATGCCCCCCAACGACAGCCGAGGCCCCCCTGGACCAAACGACCCATACGGACGCCCGCCACCATATGAAAGAGGGGACTATGGTCCTGGAGGCCGggAGATGGAGGCGTCACGGACCCCTCTGAGTGAGGCAGAGTTTGAGGAGATCATGAACAGAAACCGAGCCATCTCCTCCAGTGCCATATCTAGAGCAGTGTCTGATGCCAGTGCAGCGGACTATGGAAGTGCTATAGAGACCTTGGTGACAGCGATTAGTCTGATTAAGCAGTCCAAAGTGTCAGCAGACGACCGCTGTAAGGTCCTCATCAGTTCCCTGCAGGACTGTCTTCACGGCATTGAGTCAAAAAGTTACGGTTCCGCTTCCAGTCCAATGATGCTTGTCCATGCCAGGCGAGAACGTTCCAGGGAACGAGACCACAGCCGCTCTAGAGAAAAGAGCCGGCGTCACAAGTCCCGCAGTCGTGACCGGCATGAGGACTATTACCGAGAACGCAGCCGGGAGCGGGACCGTCATCGGGAGAGGGACCGTGACCGAGAccgggagagggagagggagagggagtaCAGACACCGCTAAGCGAGAAGGGAGCTTACGAGGATCAAGGATGGATGTAAGGAAAAGGGGAAAGAATTTCAATGCGCCACCACCTCCCTACCCTGCATGACCGGACAGGATTACAACCACCAcctcttcctccatctctcctctccACCCATCCATCTCTCTTGTCTGTTCATCTTTGCTGCCTGAATAAGAGCAGTGGATGGAAGACCCTGACCTGTGTAAGGCTATGTTATCCAAACATCTATACTCATGGTAACTaaagatgaaagaaaaaaaactttccaaacagttcttttatttttatggttTTATTTGACATGAAGATGACTGTGTGATGCTTTTTTGCAAAGAAACAATAAATTGTCCCTCACATCCCCAACTAAAAGACATAAACATTacatccttttttcttttttccccctggCTCGCTGTACTGTGTacattcagtttagtttttatagGGTACATATTTGATGTGTTCTCCCACCCCTCTTGCTCATTTTCATTTATTCTTTTCGTTGTTAGAATGTTTGTAAATGTCTCTGCTTTGATTGAAAACTAGATGgtgttgtaataaaaaatgttaactgAGGTTCTCAATGAATTTGGTGAATTCCTCTATATGTTTGGCTCATTTatattaaatgtgtattttggactGCAAACTAATTTTCATATTAAATTGGTCTATGATTAGATTATATATTTGTAGCTGTATTAGCAAGCGGCTTTATGGttagaacattttttttgttattcaaatGGTTTAAACGTTTACAAGGTAAGACAAATTAGACAAATGTACTTTATTTGGAATGTGAATTGATGGGTGGATGGGAAGACGTATACCTTGAAGAAATGGAAGGTCTAAATGTACATGCAGCTCTGAATAATTTTGGTCAACCCTGGACAACCCAccgtaaactaaaaaaaaaatgaaaatactgttCAGTGTAATCACACTGAATGCCTATTATACCAAGAACATCCAAATTGTCTTTGAAATGTATGTTGATGTGAAATAGTCATTGTTGATTTAGTAATCCAATCGAGCAGCCATTGTAGTTGCATGGTTGGTGGCATTGATAATGCTTCAAATATCAATTAATCTCATTTGGTGATTTGCCATTTCAAGTAAATGCTTTTTTGCTCCTATGTTCTACACCGAGCATGTTTTGTATGTTCATTTTTAGGACTACGCTGTCACACCAGGTAAACTTTTGAACACGGCGTAAGGGAACCCATTTAGTGCTACTGGCTCTATATATGCAATTTATTAAATATGCACCATAACATTGTCCTCATATGCAAGGCAATGTCTTTCATTCCACCATGTTCAGGTCTTGCACTTTTGTTGAAATAGACTCACTTTGTGATACAGAGCTTTTGGTTTTTAGTATTTAAGATCGGTTTGGAAAATATGCTCAGTtacatgtctgttttttttactgtctggtcaatatttacaaaaaaatattaggCCTAGATGACCTAATATGGGGGAGGGGGTGCTATTACAGTTAGTTCCTTTTGCACTCCCTAACTTTGTTAGGGTTAGgaatatggatttaaaaaaaagtcctgtTTATATGGTCCACAATAACTCAGTTTACTCTAAGAATAATCCTcgtgttatttttttgtcttcatgGAGATTAGTGGTTTCCTTgtcaagatttatttattttttcttttgtttgttttttgtccgTCATCTCGGTTCAAATTCATGGCCATCCCCTGAAATATTTCATGTCAAAGTATTTGATTGTAAAGATTGTGGACCCTACTGCTACAGGAATTACTCTGAACTTTGATGAAAAGATGTGAATCAGACTGTAACATCATCCAAATGTTTTTAATACCCTAATGATGCTCTTGATTGTAATCTTATTTAACAGTATACTTTAAAGAGTGTTATATATTCacatatattaattaatttgctCCCATAACCTTGTAAATGAGTAATGAAGCCTTGTAAATTGGGTTTTTGTacaaaaaatgtgaaaagtgGAACATTTTGCACTTAAGGGGGAAAACTCGCTTTCCCCTCTTCTGTTGTACCTATAAGGGCTTGATGCCTTACAACTTTGATTCTTTTATGTACATTGACTTTTGTGATCTGAGCAAACTCTCAATATCAGCCTGAACAGatgtctaatcagccagaataagaACATGTTTGTGCAAGGTTTTCAGTAAGAATACTTAGGTGTCACTTTGCCTTATGCTGACTTCTCTCCACAGAACTGAAGGTAAGTGTTTAAGTTCTACATCACGACAAGTGGAAACAGTCCAGTCCAGAGGAAGTCTGGCTGACTTCTGCATCTAGCCAGACCAAGACTACCTCTCACAAGCAGCTGGAAAGtatcttttttgggggggttttagTATTTGACTTGGACAGTGTAATGGTAGGATGTATTTTCACTCATTACCTGATCTTCAGCTACTTTTTTAATCGCCTGTAACAGATGTTTAGAAATTTAGCCACGTGACCCCAAGCTGAAGCTCCACACAGGTGTAAAATGGGGGAAATGTATCACTGTATTATATAACTGGTAATTTACAGTTGAGTTGTCTGCCTGTAACTGCAATTGATCAGCATAGCTATGCACTTCTCAGGGCTAcatgacattaaaaaaagagTTGAGTATCCATTATTGTTACTTTGGTTTTTAGATTAATGGGGTAATTTCTTGATTATTTTTAGGGACTTGTTCCATTTCTTGTTCTAATTACACATTTCCAGTCAGGGAAAGGTACATGATAGCTAAAATTAATCAAATGGTTATTGgtcccaaaaaataaaacctttctAAATGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308615 lncRNA upstream 369236 13071545 ~ 13075348 (+) True G227510
TU308594 lncRNA upstream 401566 12987713 ~ 13043018 (+) True G227499
TU308581 lncRNA upstream 534444 12846814 ~ 12910140 (+) False plxna4
TU308405 lncRNA upstream 1200829 12243534 ~ 12243755 (+) True G227363
TU308377 lncRNA upstream 1451632 11990100 ~ 11992952 (+) True G227338
TU308813 lncRNA downstream 19143 13493401 ~ 13493861 (+) True G227639
TU308823 lncRNA downstream 42224 13516482 ~ 13531547 (+) True G227646
TU308840 lncRNA downstream 79992 13554250 ~ 13554826 (+) True G227662
TU308978 lncRNA downstream 482439 13956697 ~ 13965492 (+) True G227734
TU308980 lncRNA downstream 493285 13967543 ~ 13969687 (+) True G227736
XM_039791429.1 mRNA upstream 1048 13361208 ~ 13443536 (+) False cacna2d4a
XM_039791767.1 mRNA downstream 291 13474549 ~ 13479115 (+) True yeats4
XM_039791770.1 mRNA downstream 5469 13479727 ~ 13490419 (+) False napepld
XM_039791771.1 mRNA downstream 6007 13480265 ~ 13490419 (+) False napepld
XM_039791772.1 mRNA downstream 6626 13480884 ~ 13490419 (+) True napepld
XM_039791773.1 mRNA downstream 6645 13480903 ~ 13490419 (+) False napepld
XR_005638103.1 other upstream 424324 13005339 ~ 13020260 (+) False nrf1
TU308397 other upstream 1318039 12120872 ~ 12126545 (+) False st8sia1
TU308276 other upstream 1687267 11689169 ~ 11757317 (+) True G227278
TU308205 other upstream 2331679 11102836 ~ 11112905 (+) False G227216
TU308693 other downstream 887 13475145 ~ 13479027 (+) False yeats4
TU308903 other downstream 200566 13674824 ~ 13685881 (+) False LOC120553473
unassigned_transcript_1486 other downstream 294797 13769055 ~ 13769127 (+) True trnak-cuu_11
unassigned_transcript_1487 other downstream 295808 13770066 ~ 13770177 (+) True trnal-caa_20
unassigned_transcript_1488 other downstream 300729 13774987 ~ 13775059 (+) True trnak-cuu_12

Expression Profile