RNA id: XM_039791788.1


Basic Information

Item Value
RNA id XM_039791788.1
length 2586
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC120553417
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19923771 ~ 20047996 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagagagggcttGGCTGGGAGGCTGAGGAGGACCGTGGACTTGAgcgcagaagaagaagaagcagaagcatcagaagaagaagaagaagaggaaggtcTCCATCATCCGACACTTGCTCATCACTGACCACCGCTCAGGATTTCAAGCATtcttccccctctcctcctgtGGCCTGACGGACCCACCAGCCCATCACCATGAACTACCTCCGCCGGCGCCTGTCAGACAGCAGCTTTGTGGCCAACCTCCCCAACGGCTACATGATGGATCTGCAGAGGCCGACCCCTCCAGGCTCATCCACTTCGTCCACTTCTTCCCCCGCCTCCCCGGCCACAGAGAGGCGGCAGCCCCCGAGCATCCCCACTCCGGCCTCCAACCCGGCCTCAGGCTCGGGGCCAGGCTCAGGCACGGGCACGGGCTCAGCTTTGGGCACAGGGAGCTTCCTCAGCTCCTTCTCCAGCGTGGTGAAGAGTGCTCAGATGGCCCAGAACGTCGCCGCCGCTGCACACGCCAAATCTGCAGCAACCGCAGCTGATGGAGCCTCAACAGGAAGCAGTCAGCCCCCTAAACCTGTCATACGCAAGCCCAAGATCCTGCTGGTCATCGATGATCAGCACACCGACTGGGCAAAGTATTTTCGAGGGAAGAAGCTGAACGGAGAGTATGAGATCCGGGTGGAGCAGGCGGAGTTCTCCGAGATCAACTTGGCCTCCTACGTCAACTCGGGATGTATGGTGGACATGCAGGTCAACAAAGGTGGCACCAGAGTGGTCAGGTCCTTCAAGCCAGACTTCGTCCTGATTCGCCAGCACGCCTACAGCATGATCCCCGGTGACGATTTCAGGAACCTTGTGATCGGCTTGCATTTCGGCGGCGTCCCGAGCAGCAACTCTCTCTTCTCCATCTACAACTTCTGCAGCAAACCTTGGGTGTTTTCTCAGATGATTAAGCTCTACCATTCCCTCGGCCCTGAGAAATTCCCCCTGAATGAACAAACCTTCTATCCCAACCACATGCAGATGGTAACAACCCCTTCCTACCCTGTGGTGGTCAAGATGGGTCATGCCTACGCTGGCATGGGAAAGATCAAAGTGGAAAACCAACAGGACTTCCAGGACATCACCAGCGTGGTGGCTCTGGCCCGGACCTACGCCACCACCGAGCCCTACGTCCAGTCCAAGTATGATATCCGCATCCAGAAGATCGGCAACAACTACAAGGCTTACATGAGAACGTCCATCTCTGGAAACTGGAAGGCTAACACGGGCTCTGCTATGTTGGAACAGATCGCAATGACTGACAGATATCGGCTGTGGGTGGACTCCTGCGCTGAGATGTTTGGTGGCCTAGACATCTGTGCAGTGAAGGCCGTCCATGGAAAAGACGGCAACGACTATATCATCGAGGTGATGGACAGCTCCATGCCTCTGATTGGTGAGCACGTGGAGGAAGATAGACAGCTGATCACAGAGCTGGTTATCAACAAGATGGCCCAGGTGCTGCTCGGAGTTTCCACACCTCAGACTTCCTCTGTCAAGACCACACAGCCCAGACGAGGGGGACACCGCTCTGCTTCCGCCTCTCCATCTCAGTCGGCCCAGGGTTCACCTCAGCGAGCCCGATCAGCCAGCACCTCACCCAGCCAGGCCTTCCAGCCCGGGCCCATCCCTGCCACCTCCGGGCCCGGAGCTCCGAAACAGTCCCCACAGCTGAACAAATCCCAGTCTCTGACCAACACCTTCACGGAGACGTTACGAGGAAGCCTGACCGACGATGAGGCCAAAGCTGAGACCATCCGCAGCCTCCGACAGTCCTTCGCCAGCCTCTTCTCCGACTAAAAGCCTCTCCAGAAGCTTCCTTGTTCTGTTAGTTGTCAggtttgaaaacaaaacaaaaaaaaaacaaccctgaCTGGTTCATCTGTTGTGGGAGTGTCCCTCCACCTCAGAGCCTCAGCTTCCTGTtccttctctttccttctcaCTGTTTGTGAAGTTTAACACACGGTGCAACCCGCTGTCCTCAGATCAATGATACATCTATCACTAGAAAGGCCAATAGATATTGGGGTTCTAACATAAAGGCCAGTGTGTTGACTGAAGATGTCAAACTTTAAAAGCTGACACATTTGCATTGGTCTTCCTTACAGGAGATGTTAAAGAGATGTAGGATGTCAGTTCAGTGCAGTCAGCTGATGGCCTTTCTAGTGGTAAGTAATAACAGTAAATAACTCGTAGCTCATAATGCTTGGTATATAGTCGTAATTCTGCATTCTGTTTGTCCAACCAGTGAAACTGTTCATTATTGGGTCGTGtcttatacatatatacacgtATACATTTAATTATAACATTGATCGCAGCTTCCAAACCGTTTGCAGATGTCTGCCGCAATATTCTTATCTGAAACTGTTCCGGTTAACTCATGAGAAATGTACTGAATCCTCACGGTTCACCAGCGATTTTAAGCATCTTGCCAGCAGCCACATTTCTCGTACATCCATGTGCTGTAGACACATATTGGCTTACGTAGTGACTCCTCTACTTAACATTACCAAAGTGCTTTTTAATAATATCATAAAAC

Function

GO: NA

KEGG:

id description
K19941 SYN; synapsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638180.1 lncRNA upstream 1917 19921100 ~ 19921854 (+) True LOC120553527
TU310591 lncRNA upstream 7454 19916115 ~ 19916317 (+) True G228922
TU310573 lncRNA upstream 17836 19852928 ~ 19905935 (+) False LOC120553104
TU310570 lncRNA upstream 41637 19854571 ~ 19882134 (+) False LOC120553104
TU310581 lncRNA upstream 52048 19869393 ~ 19871723 (+) True G228912
TU310649 lncRNA downstream 155345 20203341 ~ 20225185 (+) False LOC120553418
TU310674 lncRNA downstream 250738 20298734 ~ 20301441 (+) True G228989
TU310756 lncRNA downstream 391462 20439458 ~ 20448557 (+) True G229058
TU310762 lncRNA downstream 394671 20442667 ~ 20454788 (+) True G229060
TU310821 lncRNA downstream 515067 20563063 ~ 20565180 (+) True G229108
XM_039791188.1 mRNA upstream 17819 19882378 ~ 19905952 (+) False LOC120553104
XM_039791187.1 mRNA upstream 17819 19882382 ~ 19905952 (+) True LOC120553104
XM_039791381.1 mRNA upstream 254661 19631938 ~ 19669110 (+) False LOC120553210
XM_039791782.1 mRNA downstream 76645 20124641 ~ 20162039 (+) True LOC120553415
XM_039792446.1 mRNA downstream 120863 20168859 ~ 20173407 (+) True LOC120553749
XM_039792447.1 mRNA downstream 126455 20174451 ~ 20184363 (+) True LOC120553750
XM_039792448.1 mRNA downstream 137086 20185082 ~ 20190908 (+) True LOC120553751
XM_039791790.1 mRNA downstream 142932 20190928 ~ 20203930 (+) True LOC120553418
XR_005638131.1 other upstream 115359 19631947 ~ 19808412 (+) False LOC120553210
XR_005638132.1 other upstream 115359 19631947 ~ 19808412 (+) False LOC120553210
unassigned_transcript_1503 other upstream 464617 19459083 ~ 19459154 (+) True trnaq-uug_5
TU310402 other upstream 510067 19410490 ~ 19413704 (+) True G228784
TU310117 other upstream 1392603 18530165 ~ 18531168 (+) False srr
TU310663 other downstream 99082 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other downstream 122723 20170719 ~ 20173399 (+) False LOC120553749
TU310736 other downstream 334430 20382426 ~ 20391406 (+) False ucmaa
unassigned_transcript_1504 other downstream 1531317 21579313 ~ 21579423 (+) True trnal-caa_25
unassigned_transcript_1505 other downstream 1531908 21579904 ~ 21580014 (+) True trnal-caa_26

Expression Profile