RNA id: XM_039791791.1


Basic Information

Item Value
RNA id XM_039791791.1
length 2521
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC120553419
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19983479 ~ 20000522 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTCCGGGATCAGGGAGAAACGCTCAAGCGAGTCGAGAAGCAACAGCCAGAGCAGAGACTTGGACATTACATACCGCCTaacctactactactactactactactactacagcgGACCCGGCCGGACTCCATACACACTTTATCCCAGCAGCATAGAGGAGTGGAAAAGTTTGGAGAAATGCAGTCAGTGTACCAGCACCTGATCAGCCTGCTGTTTGTcttcagcagcctgcaggttatCCAGCTGACGGAGGGCTGCTCGTGCGCTCTGACGCACCCGCAAGACGCCTTCTGCAACTCCGACATAGTGATTCGGGCTAAAGTCGTGGGCAAGAAGCTCCTGAGAGATGGACCTTTCGGAACGATGCGCTACACAGTCAAGCAAATGAAGATGTACAAAGGATTCGACAAAGTCCAGCACGTGCAGCACATTTACACGGACGCTTCAGAGAGTTTGTGTGGTGTGAAGTTTGACATCAACAAGTACCAGTACCTGATCACAGGTCGAGTGTACGATGGCAAGGTCTACACGGGGCTGTGCAACTTCAACGAGCGGTGGGAGCGCCTCTCATTGGCCCAGAAGAAAGGCATCAACCATCGCTACCAGCTGGGCTGCAACTGCAGGATTAAGCCCTGCCACTACCTGCCATGCTTCGTGACCTCAAAGAACGAGTGCCTATGGACGGACATGCTGTCCCACTTCGGCTATCCCGGCTACCAGTCCCGGCACTACGCCTGCATCCAGCAGAAGGAGGGCTACTGCAGCTGGTACCGGGGCATGGCCGCACGCGACAAAACCACCATCAACGCCACCGACCCCTGAACCCCAAACGCACCCTGCCCCAAATCCACTGCCGCCTCCCTGACTGCGTCCTATCCCGATATCTTCTAGAGTATTACAGGACTCTTTAAGCTCACTGGCCAGGGTGTCAGCCTCTTTAAAAGGggcaaaaaaaggagaaaagaacAAATCCATTACAGTGCCTGTTTCGTAGCACTTCTGATTGAAaacaatacctttttttttgttgtgcagATCGCCCTGTTTAACTTTAATTTCCGCAAATCAAATTCCTTGCACCAAACCTTCTCTTCAGGGTCCAGTGGttaaaagacagatatttataAGGCCAATAAGAAGTGGAAGACCTTGATAAACCTCTATTGGATattcagatttctttttttaaccgaACTGACCTctaaacaattaaaagtatttaATTGGTGTTAATTAGTGACCTGCAGTTAGCCTACTGCTAACCTAGTATTATGGTCATTTTGTGCATTGAGGCAGTTTCTTCTGAAAAGCAAGGACTGAAGGTCAGATGAATTTCAATCAATGAAAAACGAACAGCCAATGATCTCTATGTACATTTAGATGTTAGATTGCTACACTTGCTAGCATTACAACATAACAAACTTCTGCAGTTCTACACATCAACAATACAGATGGAGTGCCAATGTGAGGTTTGACCTCGCATAAGTTAATATCCCTTATATTTTTTTGGAAAATGGTATTGTTTTACAGTGAAGTATACATAGATTATCTTCACAGTTTTTACTGTAACGTGTCTTTATGGATAGTAGTATCTCTGCTTACCTGAATGTTTGCAATGTAACTCATTTTGCAGTTATATCACAAACGACGTCCTTTCTGTTGAGCACTGTTGAATATCAGAGAAGAGCTAGAAATCTCTGTGTTACAGTGCTAACGCAGGGACGAGCTCACTTCTTGCAGAGAtggtgatattttattttttgctgtatATAACATAAGCTACAGAAATGAACTATCAACTCAGCTGAAACCTctgtaatacatttatttatgtttattggATGACACAGTAACTATGTGGTattatctgcaaaaaaaaagaagaacaaaatatataataacagtACATTGCGACAACCATCAAATCCTGTGCAACCTTCCAGAATGAAGGACCAGCATTTCCAGTGGTATGGTACTTGTGGTACTTCTGTTTGTTAGTTTGATCATAGTTCCCCTGACTGGTACTCTACATCAATCCAATGAAAGACAAGTATAAGCAGAGGTTTCAGACATTGAGATATTTTTTAAGTGTATATTCAATCTTTTTGTATTTAACTATTTCAAAtggacattatatatatatatatatatatatatatatatatatatatatatatgaaagtaACAATATTGTCACTAAATTCATTTTTCATCACCTGTTCCTATCTAGggttttttcttattttctttcccAGTGCCATACCTTCAGTCCATTCCATGAACAGACACAGATTTGTTTCAAAGGGAGTAACATCCCCTTCATCACTGACACTGAGAAAATATTAGATCGCTAATGCACTGTGGCTTTGACCAAGTTGGTTGTTTTCAAAagagtagtttgacattttgggaaatatgcttatttgctttcttgcttggAGCTAGATGAGCGTTTTTCctttacatggtacctgctcgactcaacTCGAGTCTACTctcctttttttggttttccatta

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005576 extracellular region cellular_component
GO:0008191 metalloendopeptidase inhibitor activity molecular_function

KEGG:

id description
K16866 TIMP3; metalloproteinase inhibitor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310618 lncRNA downstream 77536 19852964 ~ 19905943 (-) True G228946
TU310623 lncRNA downstream 101400 19877097 ~ 19882079 (-) True G228947
TU310627 lncRNA downstream 124616 19858103 ~ 19858863 (-) True G228949
XR_005638134.1 lncRNA downstream 265067 19717222 ~ 19718412 (-) True LOC120553214
TU310533 lncRNA downstream 414120 19550617 ~ 19569359 (-) True G228885
TU310720 lncRNA upstream 300580 20301102 ~ 20301438 (-) False cdk17
TU310764 lncRNA upstream 355114 20355636 ~ 20357563 (-) True G229062
TU310777 lncRNA upstream 381943 20382465 ~ 20391508 (-) True G229071
TU310783 lncRNA upstream 433633 20434155 ~ 20437536 (-) True G229076
TU310788 lncRNA upstream 441798 20442320 ~ 20450128 (-) False G229079
XM_039791379.1 mRNA downstream 144129 19806814 ~ 19839350 (-) True etv6
XM_039791380.1 mRNA downstream 144130 19808039 ~ 19839349 (-) False etv6
XM_039791378.1 mRNA downstream 144130 19808039 ~ 19839349 (-) False etv6
XM_039791390.1 mRNA downstream 176724 19733066 ~ 19806755 (-) False LOC120553212
XM_039791388.1 mRNA downstream 176724 19733066 ~ 19806755 (-) True LOC120553212
XM_039792445.1 mRNA upstream 66373 20066895 ~ 20122393 (-) True rerg
XM_039791786.1 mRNA upstream 259503 20260025 ~ 20272137 (-) True cep83
XM_039791783.1 mRNA upstream 259503 20260025 ~ 20272132 (-) False cep83
XM_039791784.1 mRNA upstream 259503 20260025 ~ 20270905 (-) False cep83
XM_039791787.1 mRNA upstream 260882 20261404 ~ 20272144 (-) False cep83
TU310602 other downstream 144177 19811245 ~ 19839302 (-) False etv6
TU310603 other downstream 144177 19811245 ~ 19839302 (-) False etv6
TU310604 other downstream 176381 19733102 ~ 19807098 (-) True G228934
unassigned_transcript_1502 other downstream 530451 19452946 ~ 19453028 (-) True trnal-cag_24
unassigned_transcript_1501 other downstream 530929 19452469 ~ 19452550 (-) True trnal-cag_23
TU310704 other upstream 66514 20067036 ~ 20122339 (-) False rerg
TU310933 other upstream 957135 20957657 ~ 20958220 (-) True G229199
XR_005638087.1 other upstream 1063169 21063691 ~ 21145533 (-) False ptprz1b
TU311312 other upstream 1770566 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 1770614 21771136 ~ 21811097 (-) False LOC120553090

Expression Profile