RNA id: XM_039791795.1


Basic Information

Item Value
RNA id XM_039791795.1
length 6361
RNA type mRNA
GC content 0.48
exon number 28
gene id apaf1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10564430 ~ 10623168 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttgttgtgaatcAGGAAGCACTGTTCTTTCAAAATTGGGCGTGTTGTACAACGTTAACAGATAAATAAATTGCCCTCTTTTACTAATAAGCTTCTTTAAAACGTGACTTACAGCTATATACAGTTCAACAAATACCTTCCTCGGCAAAGGGCAAAGAAAAGAAGACCTTCTGTAGCAGGATCCTGCATGGTGGCCGTGTTGTGCAGAGATGGCGTTGGAGGAAGGGGCACGGAGCTGTCTGCTGCGCTTTCGCCACAGACTGGAGCAGGACATAAAGCCCTCCTACCTGATGGACCATATGATCAGTGATGGTGTGCTGAGTGTGAACGAGGAGGAGagaatcatgaaccagcccACCAGGAAGGATCAGGCTGTggccctgctggagctgctgcttaGGAAGGACAACCGTGGCTACATCTCCTTCTACAATGCCCTGATCAAGGAGGCATACAATGATTTGGCCAATCTGCTACATTATGACCTACCGCAGACGTTACCCGGTGCATATAAAAGCTCCTCTGATGGCTGCACATCTTATGTCCAGACAGTGCTCAGTGAAGGTGGCGTACCACAGAGGCCCGTGGTGTTTGTGAGCCGGCCAGAGTTTGTGAACCGCGTCAGGGAGAAACTCTACCGGCTGCAGAAAGAGCCTGGCTGGGTCACTGTCTTCGGCATGGCTGGCTCGGGCAAATCCGTCCTGGCGGCTGAGGCTGTCAGACACCATGGACTCATCGAAGAGTGCTTTCCCGGAGGGATCCATTGGCTGTCCATTGGCCAGCTGGACAAACCAGACTTAATGGTGAAGATCCAGTCATTGTGTTTCCGTCTTGAGCAGAGCCTGGATTCCCCCTCCCTCCACCGGCCCCCCAACTCTCTGGATGAGGCCAAGGAGCGCCTGCGCTACCTCACTCTGCGCAGATATCCAAGATCTCTGTTGATTCTAGATGATATCTGGGACAGCACAGTACTAAAGGCGTTTGATATCCACTGTCGGATACTTTTGACCACCAGAAATAGAAGCCTCGCTGACTCTGTTAGTGgtgCCAAATATGAGGTGGAAGTGGAGAGTGGTCTGGATGAAAAGAAGGGACTTGAGATTCTTGCTCTGTACACTAACACTAAACTCCACGGACTTCCTGAGGAAGCTCGCAGCATAGTCAAAGAATGCAAAGGTTCCCCTCTGGTGGTGTCCCTGATCGGGGCTCTTCTCAAAGAGAAACCCAATCGTTGGCGTTACTACCTCAACCAGCTGCAGCAGAAGCAGTTCAAGCGTATAAGGAAGTCATCGTCTTACGACTACGACGCCCTAGACCAAGCCATGGATGCGAGCATTGAAGTCCTACCTGACGAACATCGAGAGCTCTACAAGGACCTTAGCGTGTTAGAGAAGGACATCAAAGTCCCTGCAAAGGTGCTGTCTGTTCTGTGGGACCGGGAGACTGAGCAGGTGGAGGACATTCTCGAGGAGTTTGTCAACAAGTCTCTGCTTTTTGTGGACAGTAACAATAAACCCTACCTGTACTACCTCCATGACCTCCAGCTGGACTTCCTGGTGGAGCAGAATTGCACCCAGCTCGAGagCCTCCACAGTAAGGTGGTGCATCAGTACCAGCAGCACTACAGAGATGGTCCTCCCACCTCAGGAGATGAGGAATGTCTCTACTGGATCAGATTCCTGACCCACCACATGGCCAAAGCCAACCTCtcccagGAGCTCTACTCCCTCATGTTTTCTCTGGACTGGGTTAGCATCAAGGCCCAGATCATGGGCCCAGCTCACCTAATCAATGACTATGTGGAGTATGGACCCATTCTGGACAAAGAGAACAGTGAAGTGCGCAGTCAATTCCAGGAGTTTCTCTCTCTGAACGGCCACCAGTTGGAACAGCGTCCTTTCCCTGACGTGGTGCAGCTTGCTCTGTCTCAGCCACAAACCTCCGAGGTCTACAGACAGGCTCTGCTGCAAGCACAGGGCCGGGCCAGCACGGGGAAACTCTACTTTGACTGGCTGAATAAGAGCAGCGTAGAGAATCTGTCCCGTCTGGTGATCCACCCACACCAGGGCTCCATCTACTCCGCCTGCTTCTCCCACGATGGAGCCAAGATCGCCTCCAGTGGAGCCAGCAAGACACTAAAGGTGTTTAAAAGCACCTCAGGTGAGAAGCTCACAGAGATCCAGGCCCATGATGACGAGGTGCTCTGCTGTGCCTTCTCCCCTGACGACCGTCTACTAGCAACCTGCTCCAGTGACAGGAAAGTCAAGGTGTGGAACGTGGAGCGATCCATGCTGCTGAGGGTCTTTGAGGAGGAGCATGAAGAGCAGGTCAACCACTGTCAGTTTACCAACACGACACAACGCGTCCTGCTGGCCACCTGCTCCAACGACAAGTTCTTGAATGTCAAGCTGTGGAACCTCAACAAGCCATCCTCCCAGAACACCATGTTTGGCCACTTTGAGCCAGTCAACCACTGCTGTTTCTCTCCTGATGACACCTATTTGTCCACTTCCTCCAACGACGGTACCGTCAAGcTATTTCAGGTGTCGTCTGCCAATGAGTGGAAGACAATCAACGTGAGAAACATGTTTGCAGAGAGTGATGAAGAGGTCCTTGTCAAGTGCAGCACCTGGACTGCTGATGGCAAACACATCATATGTGCAGCCAGGAACGCTGCTCTGGTGTTTGATGTGGAGACATCGGACATGTTGTTGGAGATCAGAACGAATCGTCTGAGCACGGTGCAATACTGTCACGCCTGTTCTACCAGTAACCTGCTGGCGATCGCATTCTCAAACTACGCTGTGGAGCTGTGGGACTTGGAGGCCAATAAGAAGATGGCTGACTGCAGCGGGCACCTGAGCTGGGTCCAGCGTGTCCAGTTCTCTCCTGACGGCTCACAGCTGCTCTCCTGCTCTGACGACCAGACTGTCAGGTTATGGGAGACTAACAAGGTGCACACCTCCTCAGCTGTCTGCCTAAAAAGAGACTCAGACGTTCTCTTCTATGATGAAGAAATCATCGTGTCAGCTGCAGATAACTGCAACAGACTGCAGgtgcgTGATGGCAGGACAGGATCAGTGCTGTTCCAGTCGGAGGAGAAGTCGTCCAGGATCCGGTGTACGTGTATGTGCAGACAGCCCTCTGCTGTGGCCCTGGGCCAGGAAGATGGCACTGTACAGACAGCAGGGCTGACAGCTAGAAAGGTACTGAGGACACTTGGCTGCAGGATCCAGCGACTGTTGACCTCTTTCAGGGGTTTGATTCTGGCTGTAGGGCTATGCACAGGCAGCGTGCAGGTATTGGAGGTGCCCTCTGGGAAGATCCTAGCCACTCTGCTGGGACACACCAAGACGGTGCTGCACTGCCGGTTCAGCCACAATGGCCAAACACTGATCACATCCTCCGAGGACACCACCATAAGGGTGTGGAGGTGGCAGTCTGGGGAGTGTAAAGTACTTCAGGGTCACAAGGAACAGGTCCgatgcttctctctgctctACACCTTGCCCGTCGACACAAGATTGCTGTCCTGGTCCTTCGATGGCACTGTCaagATGTGGGACCTAGAAAGTGGAGAGAAGATGCAGGACATCCAGGCTCATCGGGGAGCCATCCTGTCCTGTCATGTATCGCCAGATGGATGCCTCTTCGCCACCACCTCTGCTGACAAGACTGCTAAGTTGTGGCAGTGTGAGTCCTGGCAGTTTGTCCACACCCTGAGCGGCCACCAAGACTGTGTCCGAAGCTGCCGATTCTCCTGGGACAGCCAATGCCTTGCAACAGGAGACGACAACGGAGAGATTCGGCTCTGGAGTGTCAAGGACGGCTCTTTGCTGAGGATTTGTTCCCGTGACGGGAAGGACGGCATGGATTCACTCCACGGAGGCTGGGTGACCGACCTGCACTTCTCCCCAGACAACTCTCTTCTGGTCTCGACTGGCGGTTACGTCAAGTGGTGGGATGTGGAGAAAGGCGAGGCCCTGCAGACCTTCTTTCCGACCGGAACAGCGTTGAAGAGGATCCACGTCTCAGCCGACTTCTCTACCTTTGTCACCATTGACAGTATCGGCATTCTCTACATCCTGGAGAGGGTAGTGTGAGAAGGTGCCAACTCTGCTCCAAAAGAccacaaaaaagaaaggaaCAAAACACCATAATGGAACCAAACACTAGGTGTGTCCCCGACTAAGAATTTACATAGTAGAATCAGATTTGTCAAGTCTTGCCTATCACCGACTGATAGTGGAATTAGGGGGCTGACTACAGTGATGAAATATTCAGTTGTGATAAGATGGTGTGTGTAAAGCTCCtttttgtatgaaaacatgcaacTGATTAGAACACAGACATAAAAAGAGTAGCTCCTTATTGTATAAGTGTTGCAGGGGTGTAGAAGATTAATTGAAAGAGGTTTGGAGCTTGGGCACTCGTGTGTCACCTTAGCAGTTAGCAGCTGGCCCCCTGTGATGAGAAGCGGAGCGCACGGAGCAAAAGTCTGCTGTCCTGCAGCGCACACTCTATACTTCTTTCACAATCCTCTTGTCATGAATTTTGTTCTGCCACAAACGCAAGCGTTGCCTCTTTTTGGATATTGGATATGTGGATTTGGTAATCATTGGGGTGGACGGATCATATTGAGAAGATGTATTAAAAGcttctttcttttcacatttttatttacagcatTATATGTTGATATTTATGTCATAATATGCTGTATATTAACTTATTGGGAGAAAACAGGTAGTtatatgggttagggttaggcataaCGCCTCTGCGAAGATTGGACTGTGAGATTGCCAGTCAAATCAGGCTCCTTTGATCGAAGCATCGATTATTCCACTATTCGGGGCCATCCCACCCCTACCTTACAGGCTGTACACAGACGTAGACATGTTTTGTTCCATTAAGGACACTTGCAGGAAGCTAAACTGAAAGCTGCGGCATCCCAGAACTAAACATTTCTCAGATACTACGTTTACATTTCCACTGCACTATTTCTTCAGCCTTACGATAGAGCATTACAGACATTCAGTTTCACTTCTGACTCGCTAACTTGACTCTACCGGTTTACACCAGCTTTAAATGAAAAACTGCTGATCAACTGTTGGGAGTGTAGATGCACCATGACTGCTCAAAGAGTCTTAAGATTCCTGCTCTAGTCCCTCTGTTTTACACATAAAGGAAGTAAATGCAAAGACATGGATTTTGTAGATAAAATAGAGCagaatctcttataaaaaaacaaggaaaggtgcattaaaaacacaacagccagCGTTTGTGACGATCAGGTCTTCTCGAGCAGatcttttaaataattaataccTAGTAAATAGGTTAATATCAACAGGTTACGGATATGTCATGCTTGCATCAAATGTGAATCATAAATGTTAATCTATATTGCATTAGGGCTAAACATAATTGAATGTGATCTGAGAGATTTTCCAGTCTGCTGTATGTGATCGATATACAGAAGCTATGGTGCATGTCATGGAATTGACTTGTTTATGCTGTGATGGTTTTGaactttaattctttttttatgtttgtgttttgaggGCAAATCTTCTGTGTCTGTTTATTGACACTGCAGCCTTAGTCTAAATGTGACTACTGTAGGTACTGGAGGGTAtgtatgttttgtgtatatGGATTCAATCCACCAGCGTAGATAACATTTTTGGTGCACTTTCATAAGCATTAAAAATTGATAGATAGATTAAGCTTTAATGATGAGGCATTTAAATTTGAATCTGAAATCTTTTGAAAGCCTGTGAGTCCATTTGTACACCTGAACAATTTGTACTTTGAACTTAGATCAAAGGTAAATGTTTTCTACAGGAAAATGGCAGACTGATGTATAATTTATAATCAAATGTCCACACGCTAATGTTAAAAGGCActttttttcacacatttttatctgcATGTTGTCAAACTACTGAGCCTTTTCCTGTTCTGAGCACTTTGAAGCAGGAGTTACAATCTTTCATACAGTCTTTGCTGATATAGCTTTGTTCAGACGCATTAAAATGGATCCTTGCTTTGATTTGACAATACAAATGAGTGCTTATTCTTAAATATGTGACCGAGAGATTACAGCTTGCCTATCAAACCTATTCATTGCAGTGATCCAGACTACAGGTCCATTAGGAgacaataaatgaataaatgtaaggatgcacattttttaacaatgcTGTTGCCTTTTTCATGTTGTGCTCTTCCTGGTTGGTGCTTTAACGTCTCTCTAACAAAATTCCTGAAATATTGATTTCTGCTCAGGATGGGTTGATAACAATGTGAGTGTAATTTATAAAAGATTAAACTACACACACTATGATCATAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0006952 defense response biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005524 ATP binding molecular_function
GO:0043531 ADP binding molecular_function

KEGG:

id description
K02084 APAF1; apoptotic protease-activating factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308027 lncRNA downstream 26014 10538204 ~ 10538416 (-) True G227089
XR_005638174.1 lncRNA downstream 26593 10509731 ~ 10537837 (-) True LOC120553506
TU307912 lncRNA downstream 280345 10220956 ~ 10284085 (-) False G227020
XR_005638112.1 lncRNA upstream 16579 10639747 ~ 10660499 (-) True LOC120553135
XR_005638210.1 lncRNA upstream 317210 10940378 ~ 10942825 (-) False LOC120553801
TU308148 lncRNA upstream 317221 10940389 ~ 10942789 (-) True LOC120553801
TU308149 lncRNA upstream 317221 10940389 ~ 10942789 (-) False LOC120553801
XR_005638209.1 lncRNA upstream 317424 10940592 ~ 10942825 (-) False LOC120553801
XM_039791995.1 mRNA downstream 299725 10263985 ~ 10264705 (-) True LOC120553502
XM_039792478.1 mRNA downstream 317165 10242672 ~ 10247265 (-) True ckap4
XM_039792083.1 mRNA downstream 377457 10183285 ~ 10186973 (-) True bik
XM_039791577.1 mRNA downstream 411276 10147639 ~ 10153154 (-) True si:ch73-352p4.8
XM_039792057.1 mRNA upstream 852 10624020 ~ 10632377 (-) True tcp11l2
XM_039792427.1 mRNA upstream 11580 10634748 ~ 10635920 (-) True LOC120553733
XM_039791224.1 mRNA upstream 37752 10660920 ~ 10665486 (-) False si:ch211-244b2.3
XM_039791223.1 mRNA upstream 37752 10660920 ~ 10665486 (-) True si:ch211-244b2.3
XM_039791226.1 mRNA upstream 43334 10666502 ~ 10671184 (-) False si:ch211-244b2.4
TU308019 other downstream 41468 10513494 ~ 10522962 (-) True G227082
unassigned_transcript_1485 other downstream 367997 10196347 ~ 10196433 (-) True trnay-gua_61
unassigned_transcript_1484 other downstream 368560 10195784 ~ 10195870 (-) True trnay-gua_60
XR_005638146.1 other downstream 1809598 8572959 ~ 8754832 (-) False ppfia2
XR_005638148.1 other downstream 1878493 8565242 ~ 8685937 (-) False ppfia2
TU308180 other upstream 357030 10980198 ~ 10981259 (-) True G227197
XR_005638189.1 other upstream 1000841 11624009 ~ 11676832 (-) False pcloa
XR_005638137.1 other upstream 1215776 11838944 ~ 11848941 (-) False cracr2ab
TU308500 other upstream 1661758 12284926 ~ 12288154 (-) True G227429
TU308872 other upstream 2897097 13520265 ~ 13529778 (-) False LOC120553470

Expression Profile