RNA id: XM_039791798.1



Basic Information


Item Value
RNA id XM_039791798.1
length 3033
RNA type mRNA
GC content 0.46
exon number 4
gene id wnt7ba
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17188186 ~ 17196857 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ttcccccCATTCAGTCCTCTATCGGTCCAGGTGGCAGAGCGCACTTCGACCGTGGGATGCAGCCTCTCATCTCCAACACATGGACAGCGGAGCTTGGAGCTACCGCAGCGCGACACGGCTCCACTAGCTGAAGACACCACCTCTCAACGGCGGAAAGAAGAGACGACGCTCCCGCGTTTAACCCTTTGGACTTCAGATAAAAGGATATACGTCTTCCcacttgttgtttttcttatcTTTTCTAACCGCAGGAGAGCATAAACAGTTGTGTTCAATGCGCAACCATGCTCATCATCTCGTCCCGCAGCGCGCTGCTGTCCGTCTACTACCCACAGATCTTCCTCATCCTCACCAGCGGTAGCTACCTGGCGCTGTCCTCTGTGGTAGCTTTAGGCGCTAACATCATCTGCAACAAGATACCGGGACTGGCCCCCCGTCAGAGAGCCCTCTGTCAGAGTCGCCCTGACGCCATCATCATCATTGGCGAAGGCGCCCAGCTGGGCATCAATGAGTGTCAGTACCAGTTCCGCTACGGCCGGTGGAACTGCTCAGCCCTGGGAGAGAGGACCGTCTTTGGCCAAGAGCTGAGAGTAGGCAGCAAGGAGGCAGCATTCACTTATGCCATCACTGCAGCCGGAGTTGCCCACGCAGTGACCACAGCTTGTAGCCAAGGCAACCTCAGCCAGTGCGGCTGTGATCGTGAGAAGCAGGGCTACCACGACCAAGAGGAGGGCTGGAAGTGGGGAGGCTGCTCAGCTGATATTAAGTACGGTGTGGAGTTCTCGCGACGCTTTGTAGACGCCCGGGAGATCAAGAAAAACGCCCGCCGGCTGATGAACCTGCACAACAATGAGGCAGGGCGAAAGATCCTAGAGGAGAGGATGAAGCTGGAGTGTAAGTGTCACGGCGTGTCCGGTTCCTGCACCACTAAGACCTGCTGGATCACCCTGCCAAAGTTCAGAGAGATTGGTTATCTGCTGAAGGAACGCTACAGCGGAGCAGTTCAAGTAGAGCCGGTCCGGGCCTCGCGCCTCCGCCAACCCTCCTTCCTACGACTCAAAGAGGCTCGGGGCTACCAGAAGCCCACGGACACAGACCTGGTGTACCTGGAGCGTTCGCCCAACTATTGCGAGGAGGACACAGCCACAGGAAGCACAGGAACACGGGGAAGACTGTGCAACGGCacttcaacacacacaacagacagttGTAATTTGATGTGCTGCGGCCGGggttacaacacacaccactacacacGCATCTGGCAGTGCAACTGCAAGTTCCACTGGTGCTGTTTTGTCAAGTGCAACACGTGCAGTGAGAAATCAGAAGTTTTCACCTGCAAGTAGGGAATGAGGAAGCGGGACACTGTGGTTAAAGATCAAAAGGTTATGACAAAGTGGAATTTGAAGTGAAGGACTTGGAAGTATTTATTCAACAATTTGCACATTTTTACATCCTATTTTGGAAttctaaagaaagaaaaaaaaaaatattcggAAGACAACATCTTGCAACATCTGTAAGATGTAGCTTACAGATGTCACGCACGAGAAGGAAAAACAAGGACTATTGTTGGATCTTGAGAAGACTTTTGTAACACATTAACTGGAAATGCTACGACAGCAAGGCGCTTCAGACTGTCATGACAGAAGACGGGCTCCTGATGACGATTGAAAGATGGCAGTGGAATACTTTTAACTGTACGCTCACACTGTATTCTGTTTGaacactgaaaataaaaaaaaattatttatgttaagacattttttaaacCTAGTCTTATAGGACTGATAGCAAACTCAATTGCTCTTTAAgatttttcctctcttttatgATCTTCAATTGCTTCTGATACATTTCAAGCTGAAAATAACAGATTTTGAGTCACATGGCCATTATCAATCGTCAGTGGCTTATTTCTCTATGGAGGagttatttttcttttgcactcacggtcacatttttttctctttttcatggGACATCAGTAAGTTGTGTGGTTGAGTGCTGTGCTGACATCTCTCTCATGGACAAATTCCCCTCTGAAACCAGACCCTTTGTTAAGCCAAGAGGCAAAGAGGCAGAAAATACTCCCAAACTATTTTAAGCATCCAACTTGTCAGTTTGAACGGCACTTTCCATCCTGACCGtgttcattgttttgttttcggAGGGCTCCTGACTTCTGAGAAAAGCATGGAAGCCTCCATAGAGGTGCAATCAGGTTCAGATACATCCAACATTCCCATGAATGGCAGAGACGTGGAATTCCACATGATGGCCTCTGCTTACACAAGGCCTTCCAGCGCGGTTTAGGCCTGCCTGGGTGGATGGCATGTGCCCTAACAACACAGAGGGGGGTATGAGAGGATCAAAGGCCTCAAAGCTATTTTTGGAAAGCATCCTTAATGTATTCAGAAATGTTTATTTAGGCTTTATATAACTTACAAAACAATTTGAAGAGTATATTTTTATATGAGGAACGTGGCACTTTATGTCATTTATAGATGGAAAAGAAAGTCACTATTTACAAGTGTTTTCTAATGTCATTGTATTCAGATTTGAGAACTATAAATTATTTGGAATTTATGTTTTTGATCAAAGCCAAATTGTAAATACTCCACGTGTTTTATCAAAGTAGCCCAGATTGTTCATCTCATTCACAATTCAACGTAGCTCATAAAAGCAAGAATGATTCATCAAGTGTTGGAAAGTCcaggaaatgttgtgtaaactGCTGTTAAGTATTGGAGTAAATTCATGGAATTGCGAGTAGATAACACATTGAAAGCGTCAGCAACCAACGAGTTTTGCAGCTTTACATCAAAGAGATTTCTGTGTTCCCAGTTGTCTACATGGCTCTTTCAGTAACTAGGATCCTCATCACTCATTGATTCCTAAAAGCATAGTTGTACCTATAAATACCACAGAACTGCCACAGACCAAATACAATAATAAGGTCTGCATCACTTACAAACATGGACagttgtattttttcttttttttaccaataAAATTTGAGCATCCTTT

Function


GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU309867 lncRNA upstream 49835 17137271 ~ 17138351 (+) True G228384
XR_005638158.1 lncRNA upstream 67602 17119099 ~ 17120584 (+) True LOC120553376
TU309855 lncRNA upstream 72843 17113825 ~ 17115343 (+) True G228375
TU309853 lncRNA upstream 75763 17109768 ~ 17112423 (+) True G228374
TU309854 lncRNA upstream 76836 17109768 ~ 17111350 (+) False G228374
XR_005638182.1 lncRNA downstream 102866 17299723 ~ 17301020 (+) True LOC120553531
XR_005638205.1 lncRNA downstream 405335 17602192 ~ 17790439 (+) False LOC120553790
XR_005638203.1 lncRNA downstream 405336 17602193 ~ 17790439 (+) False LOC120553790
XR_005638204.1 lncRNA downstream 405337 17602194 ~ 17800247 (+) False LOC120553790
XR_005638202.1 lncRNA downstream 405337 17602194 ~ 17790439 (+) False LOC120553790
XM_039791558.1 mRNA upstream 155464 17021892 ~ 17032722 (+) True LOC120553296
XM_039791556.1 mRNA upstream 182872 17000945 ~ 17005314 (+) True cdkn1d
XM_039792432.1 mRNA upstream 207429 16980006 ~ 16980757 (+) True LOC120553739
XM_039791550.1 mRNA upstream 305666 16880276 ~ 16882520 (+) False morn2
XM_039791551.1 mRNA upstream 305666 16880511 ~ 16882520 (+) False morn2
XM_039791156.1 mRNA downstream 37155 17234012 ~ 17237437 (+) True LOC120553078
XM_039791148.1 mRNA downstream 41078 17237935 ~ 17260868 (+) True kdm5a
XM_039791149.1 mRNA downstream 41078 17237935 ~ 17260868 (+) False kdm5a
XM_039791150.1 mRNA downstream 41078 17237935 ~ 17260868 (+) False kdm5a
XM_039791155.1 mRNA downstream 65789 17262646 ~ 17275457 (+) True LOC120553077
TU309802 other upstream 265363 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 356943 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other upstream 356943 16771062 ~ 16831243 (+) False cald1a
XR_005638140.1 other upstream 1990356 15168604 ~ 15197830 (+) False LOC120553256
TU309001 other upstream 3183337 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1495 other downstream 393234 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 1333308 18530165 ~ 18531168 (+) False srr
TU310402 other downstream 2213633 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 2262226 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 2435090 19631947 ~ 19808412 (+) False LOC120553210

Expression Profile


XM_039791798.1 Expression in all Baseline Samples

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XM_039791798.1 Expression in each Bioproject

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XM_039791798.1 Expression in each Sample
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