RNA id: XM_039791803.1


Basic Information

Item Value
RNA id XM_039791803.1
length 2502
RNA type mRNA
GC content 0.52
exon number 9
gene id chchd3a
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 12561350 ~ 12634881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCCAGCACGTCATGCTAAGGAAGTGTAGAGTTGCCGAAGCAGTGGCGTGTGGGCCCTTGCCAGCTATACCTGGCTTTAACGCTTGTAAACTGTAGGAAAACAAAAGTGCATCACAGTCTTCCATATATTCCATGTAGAAAACTGAAACTTTGACAACCTGCGGTCTGATAATGGGAGCGAACAGCAGTACCCGCCGCGTTTCATTTGAGTCAGATGAGAACGAGAATATAACAGTGGTGAAGGGCATACGGCTTTCTGAGAATGTCATCAACCGCATGAGGGAACCTGAAGCTCCTCACAAACCCCAACATGCACCCTCTCCACCCACTTCCATGGCGCCTACCCTCATACCTTCTCTCCTGCGGCCAGTGCCTCCCCTCTTTGACCCGATCACCTCCTtgccctctccccctcctcttgTAGAACCTGTTGCACCTCCAGCAGCATCATCTCCCACAGAGACTGTGGCTGCACCTCCACCAGTTCCTCCTCAACCTCCTAAAGAACAGGTAGCAGCACCCACTATAATTGACATGGTGCTCCCATCCTCATCCCccccagctgctgctaatgctgtcGCGGCTCCTGCTTTTGAACCTGTGGCGGTACCTCCTCCCcctgctcctgctgctgttGAGCCACTTATTTTGCCTCCATCTCTCCCCCCTGCTGCTCCCATTGCTCCCCTGATTCTTGCTCCCTGCCCTGCCTCAGCGGTGGTGGAAGCAGTCACTCCGCttgctcctcctccccttgcaaTTGAAACTTCTCCTCCTCCCATAAATCAATCCCTTGCTTTTTCTCCTCCAGCAATTGAACCCATTGCTCCTCCACATGTGATTGAACCCATTGCTCCTTCATCTGTAGCTGAACCCATACCACCTCCTCTTTCTGTTGAGATGGAACCCACCATTGCTCCCCCTATTACTGAATCCAAAcccctctctgctcctcctgtTTTCGAGCCTGTCATCATCCTGCCACCGCCCCTGCATCCTTCAGGGGACACTTTGTCCCCGCAGTCTGCCGAGCCAATTGCTGCACCATTTGCTGCACCTCCCCTGCCTGAGTATACTGCTCCTTGTGAACCAGTTGCACCTCCTTCTCAGCCCCCAGTGAAGCCAGAATCCCTTGCTCCTATCCCGGAGCCAGTAATAGTGCCTGAGTCGGTTTTGGTCCCACCACCACCTCCTGCTGCACCAGTCGTTGATGAAGAGGCCCTGAGGAGGAAGATCACTGATGAGCTGTATAAAGGCTTGGAGCAGGATAGGGCCAAGGCCGAGCAAGAGCTGCAAGCCTGGATTGAGGCGGAGAAGGCCCGGGCGGAAGCCCAGGCTCAGGATGATGCCCAGTCCAAGGTACAGGATGAAGTGTCCAGGATCCTGTCTGTGGAGCGGGCTATGGCCCAGGAGAGCATCCAGCAGGCTGTAATAAGAGAGAGGATCGCCACTGAGGATGAGAGACTCCGTGCTCAACTATATGCCAAGCAGCTGGGGGCCAGAGAAGCAGACCTAAACAAGCAGGATGCTTTCTACAGAGAGCAGGTGGCCCGGCTGGAGGAGAGGAGTGCTCAGTTCTACAAGGTCACAACAGAGAACTACCATAAAGCTGCAGACCAAGTGAATGCCAAGTTCAAGCGGTATGAGTCGTATCCTGTGTGTGCAGACCTACAAGGCCAGATCCTCGCATGCTACAGGGAGAACGTTGGAAAAACCCTTCACTGTTCCAACATAGCAGCCCTTTACCTCCAGTGTGTCAACAATGCCAAACAGAATGACAAGTATGTGCATGCGCCCTAATGGACAGACATAACAAGTTGAGAACCGGGGGttaaggaagagagagaaagagagagagagagagcaatgaAGAGTTCATTGTCTGGGATTACTGATTATCGACCGACTGACAAACTGACCAAACCAGAGTGGAGGAAGTGAGGAATGAGTCAGCACCAAGACACACACCCTCAGAACCTTGTGGCGAACCGGACCACACCAGAGGCACCGAACACAGCACCCTGATAGAGAAATAGACACCTTCCCCACCTGTCTTACCTTTCGTCTAGCTCTGTGTATGTAGAGAGGCAGCGACACTGTCTGCCATTTTGGAGAAACAGCAGACTGACAGGACCTAGCAGGACCTAGCAGGCCTGAGCTTGGCCCGCGGTAAGGACAGTAAAAATGAACCGGAACCACGACGAGAAAACAAGCCGCCTCTGTCACAAGCCACCTGGACCCATCCCCTCTCACTTCAACACtgttaggaaaataaaagtatatttttactAATTAAAGTCAGTCCTACGTTGTTCATTCATTGTTTTCCTTCTCCTAATGCACTATCCTGTACACAAATGCACATGTACGCAtctgttttttctttgcatttgtTCGTGTGAGTTTGTGTTATGTTAATAATGTAATCTGCGTGTTGAGTATTCATCCAGACCAACACTTGTGACAATGTCTGATCAGaggaaataaaacatgaaacgaTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308405 lncRNA upstream 317595 12243534 ~ 12243755 (+) True G227363
TU308377 lncRNA upstream 568398 11990100 ~ 11992952 (+) True G227338
TU308264 lncRNA upstream 933407 11624235 ~ 11627943 (+) True G227267
TU308248 lncRNA upstream 1100850 11460113 ~ 11460500 (+) True G227251
TU308216 lncRNA upstream 1373568 11186939 ~ 11187782 (+) True G227221
TU308581 lncRNA downstream 211933 12846814 ~ 12910140 (+) False plxna4
TU308594 lncRNA downstream 352832 12987713 ~ 13043018 (+) True G227499
TU308615 lncRNA downstream 436664 13071545 ~ 13075348 (+) True G227510
TU308813 lncRNA downstream 858520 13493401 ~ 13493861 (+) True G227639
TU308823 lncRNA downstream 881601 13516482 ~ 13531547 (+) True G227646
XM_039792486.1 mRNA upstream 245232 12308833 ~ 12316118 (+) True mest
XM_039792479.1 mRNA upstream 256975 12260069 ~ 12304375 (+) True atp2b1a
XM_039791208.1 mRNA downstream 24387 12659268 ~ 12910189 (+) False plxna4
XM_039791207.1 mRNA downstream 26476 12661357 ~ 12910189 (+) True plxna4
XM_039791206.1 mRNA downstream 26476 12661357 ~ 12910189 (+) False plxna4
XM_039791209.1 mRNA downstream 370458 13005339 ~ 13022947 (+) True nrf1
XM_039791211.1 mRNA downstream 370458 13005339 ~ 13022947 (+) False nrf1
TU308397 other upstream 434805 12120872 ~ 12126545 (+) False st8sia1
TU308276 other upstream 804033 11689169 ~ 11757317 (+) True G227278
TU308205 other upstream 1448445 11102836 ~ 11112905 (+) False G227216
TU308207 other upstream 1448445 11102836 ~ 11112905 (+) False G227216
XR_005638076.1 other upstream 1575149 10948285 ~ 10986201 (+) False impdh1b
XR_005638103.1 other downstream 370458 13005339 ~ 13020260 (+) False nrf1
TU308693 other downstream 840264 13475145 ~ 13479027 (+) False yeats4
TU308903 other downstream 1039943 13674824 ~ 13685881 (+) False LOC120553473
unassigned_transcript_1486 other downstream 1134174 13769055 ~ 13769127 (+) True trnak-cuu_11
unassigned_transcript_1487 other downstream 1135185 13770066 ~ 13770177 (+) True trnal-caa_20

Expression Profile