RNA id: XM_039791817.1


Basic Information

Item Value
RNA id XM_039791817.1
length 2409
RNA type mRNA
GC content 0.45
exon number 4
gene id lhfpl3
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9134594 ~ 9173220 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACCTCCCTTCACACAGAGCGGAGGATGATCCCCGGGGCCCCCAGCACGACCACCACCATGCTCCCCGCCGCCGAGGCTGCCAAAATTTACCAGACCAACTACGTGCGCAACTCCCGCGCCATCGGCACCCTATGGGCCATCTTCACCATCCTCTTCGCCATCGTCAACGTGGTGTGCTTCATCCAGCCGTACTGGATCGGAGACGGAATGGACACCCCGCAGGCGGGCTACTTTGGTCTGTTCCACTACTGCATCGGGAACGGGCTGTCCCGGGACTTGACCTGTCAGGGCAGCTTCACCGAGTTCAGCACCATCCCCTCCGGTGCGTTCAAGGCCGCGTCCTTCTTCATCGGCATGTCCATGGTGCTGGTCCTCACCTGCATCGGCTGCTtcgctctcttcttcttctgcagcACTGGCACCGTGTATAAGATCTGCGGCTGGATGCAGCTCGCTGCAGGTACATGTCTGATTCTAGGCTGCATGATCTACCCGGACGGCTGGGACAGCGACGAGGTGAAGCGCATGTGTGGCGAGCAGACGGACAAGTACACGCTGGGGGCCTGCTCGCTGCGCTGGGCCTACATCCTGGCCATCATGGGCATCTTGGATGCTCTCATTCTTTCCTTTCTGGCCTTCGTCCTGGGGAACCGTCAAGACAGTCTGATGTCTGAGGAGCTGCTGGGAGACAAGAGCGGCAATAATACCATATAATATCTGGTCTTGCTGCCTAGGCATGATGTTACTTCAGGATCCAGCTTCCCTCTCCTGGTCCAGCCTGTGGCTGAGATGCAGAGCTTATGTGTGGGGAAAGAACAGATCAAAGAAGAGGAAGTCTGGAAGAGGTCATACAACCTTGGTGGGAACCAGGATGCCACCTGTCCTCTCTGAAAGCTCCCCCCTGTAAAATAGCCTTCTCATTCAACTCAAACTGCTTAATCTCACAGGATAAATTCTCAAAAAGACTTTCTAAAAGTTTACCTGTGTTGGTATGTCACTGCATCATCTTTTCTAGAGCTGTTCAAACTGAAATTATTGTCTGTGTGGATATGAGGAAGGCTGCCGGTGAGCAAGTTAAGctgaattttatttatttaaagactCTTCATGCGGTAATATAGCTCCAGGACACACACCACTGAGTGAAGGCTGCTCAAATCGAATTAAATCAAAACAACTTTGCCAGACTTCGACTGACACAAATAAGACTTGAGGTCAAAGCTATCAGATCTAATTTCTTATCAAGTCAACAACAACTCTGCAACGGACAGTTTGACCTTTGATTTAAAGAAGAGCAAAGTGAGGACTGAAGAAAATGAGGCTGgacaaaagaagagaaagagcagtattgttttgttatatttacATGTTTGATGTTATAGAATCAAAGGTAGTAATTAGAGGTTTTGCTGGTGACaactttgcaaaaaaaaaaaaaaaaagctaaaaaggaGAAAACATCAATTGTATCAAGTACATAATCTGTGTATAGCTATATGTTTATTATGTCCCTGTATTTTGTCTTGACTTTGAAATGTACACTTTGAAATGTCAAGCTATTGGTCCATTATTAGTGTGTGCCATACAATATCTTGTAATCTGACAGTATTGTGGAGTACTTAAGGGAGTAAGAAAAGTTAAACTGAACATTAATTGAAGCTGGATAAGTTTGACTCTTTGTATCTTTTTGTTGCCTGTCATTCTTCAGTCTCCCCGCTAAAGGAGTTAGTGGAGTGTGTCTTACATTAAAACTGTTATTGTAACTATGATGGAACAAAAGAAACATGAAAGAAATATGCTCATTTGCTTTTTGGTGTAGAGTTAGCATTAGCTACCTGGGTAAGAATCAGAACTCAGAATCACAATCAGAGAAGGGTTAAGAGACAGTGGGGATTACAGGCCTTGTTAATGAGGCCGACAGCAGTCGGGAAGAAGCTATTTGTGTGGCGTGAAGTTTTGGTCCTGATGCGTGTTTCTAGAAGTTTTTGACCAGGGTGGTAGAGCTCGACGAACAGGCAGCCAATCACATTCTCAGCAGAGAAGAAGACCAATTCTCTCACCAACTCTCCGCTGGAAAGCTAAGTATAATTCCTAAAATGTTGAATTCCTTTAAcaccttttttaaacaaagtagGAGTGTCAGACAGcaacattatattttgtaagtGGCCCTTATTTGTTATTATTCCTTTTACTTCAGGTACCATGTCACACTAAAGGagtcatgtgtgtttgtgtcactcaTCAAGTCGCATCCTTGGGCCCAAAGGTGTAAGGTGGAGGCAGTATTTCTTTCTCCCAACTTATGTTGAGACTCACAAGAACCCTTTTCTGTATAAATCTGTCTAGATTATTCACTTCTAATATGGAATCAAAGTATGAGACATAATAAAAAATTACCAAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307553 lncRNA upstream 94768 9037773 ~ 9039826 (+) True G226755
TU307545 lncRNA upstream 118319 9016073 ~ 9016275 (+) True G226748
TU307544 lncRNA upstream 118693 9015615 ~ 9015901 (+) True G226747
TU307511 lncRNA upstream 120948 9012843 ~ 9013646 (+) True G226717
TU307510 lncRNA upstream 121932 9012142 ~ 9012662 (+) True G226716
TU307627 lncRNA downstream 8759 9179139 ~ 9204451 (+) True G226810
TU307747 lncRNA downstream 480867 9651247 ~ 9654254 (+) True G226885
TU307781 lncRNA downstream 581564 9751944 ~ 9754116 (+) True G226918
TU307786 lncRNA downstream 626093 9796473 ~ 9826525 (+) True G226921
TU307787 lncRNA downstream 635862 9806242 ~ 9806602 (+) True G226922
XM_039791818.1 mRNA upstream 14609 9116805 ~ 9119985 (+) True guca1a
XM_039791611.1 mRNA upstream 45046 9087173 ~ 9089548 (+) True llph
XM_039792055.1 mRNA upstream 114465 9017086 ~ 9020129 (+) True fgf23
XM_039792293.1 mRNA upstream 124407 9006558 ~ 9010187 (+) True LOC120553653
XM_039792424.1 mRNA upstream 201617 8927072 ~ 8932977 (+) True LOC120553730
XM_039792211.1 mRNA downstream 66846 9237226 ~ 9241346 (+) True ndufb2
XM_039791669.1 mRNA downstream 97818 9268198 ~ 9273908 (+) True LOC120553346
XM_039791670.1 mRNA downstream 97818 9268198 ~ 9273908 (+) False LOC120553346
XM_039791672.1 mRNA downstream 98689 9269069 ~ 9273908 (+) False LOC120553346
XM_039791883.1 mRNA downstream 503611 9673991 ~ 9679815 (+) True cd36
TU307294 other upstream 701897 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 1734195 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 1802335 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 1813545 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 1987254 7147269 ~ 7147340 (+) True trnaw-cca_35
TU307644 other downstream 66884 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 1021946 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 1024050 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1483 other downstream 1024740 10195120 ~ 10195206 (+) True trnay-gua_59
TU308063 other downstream 1526874 10697254 ~ 10699718 (+) True G227121

Expression Profile